data_6S8W
#
_model_server_result.job_id            M1LuzR0CCRbFMapd21Wxyw 
_model_server_result.datetime_utc      '2024-11-28 12:54:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6s8w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
#
_entry.id    6S8W 
#
_exptl.entry_id    6S8W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         84.77 
_cell.angle_beta          87.51 
_cell.angle_gamma         65.37 
_cell.entry_id            6S8W 
_cell.length_a            64.209 
_cell.length_b            75.26 
_cell.length_c            121.631 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6S8W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,K,L 1 1 
C,D,H,I,J,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 348 A LYS 348 1_555 E C4A PLP . A PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.275 ? 
covale ? covale2 B NZ LYS 348 B LYS 348 1_555 G C4A PLP . B PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.272 ? 
covale ? covale3 C NZ LYS 348 C LYS 348 1_555 H C4A PLP . C PLP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.27 ? 
covale ? covale4 D NZ LYS 348 D LYS 348 1_555 J C4A PLP . D PLP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.277 ? 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 264 n y 
N1 C6 PLP sing 265 n y 
C2 C2A PLP sing 266 n n 
C2 C3 PLP sing 267 n y 
C2A H2A1 PLP sing 268 n n 
C2A H2A2 PLP sing 269 n n 
C2A H2A3 PLP sing 270 n n 
C3 O3 PLP sing 271 n n 
C3 C4 PLP doub 272 n y 
O3 HO3 PLP sing 273 n n 
C4 C4A PLP sing 274 n n 
C4 C5 PLP sing 275 n y 
C4A O4A PLP doub 276 n n 
C4A H4A PLP sing 277 n n 
C5 C6 PLP doub 278 n y 
C5 C5A PLP sing 279 n n 
C6 H6 PLP sing 280 n n 
C5A O4P PLP sing 281 n n 
C5A H5A1 PLP sing 282 n n 
C5A H5A2 PLP sing 283 n n 
O4P P PLP sing 284 n n 
P O1P PLP doub 285 n n 
P O2P PLP sing 286 n n 
P O3P PLP sing 287 n n 
O2P HOP2 PLP sing 288 n n 
O3P HOP3 PLP sing 289 n n 
#
_atom_sites.entry_id                     6S8W 
_atom_sites.fract_transf_matrix[1][1]    0.015574 
_atom_sites.fract_transf_matrix[1][2]    -0.007141 
_atom_sites.fract_transf_matrix[1][3]    -0.000104 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014617 
_atom_sites.fract_transf_matrix[2][3]    -0.001179 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008256 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PLP A 1 601 348 PLP LLP . 
F 3 FMT A 1 602 601 FMT FMT . 
G 2 PLP B 1 601 348 PLP LLP . 
H 2 PLP C 1 601 348 PLP LLP . 
I 3 FMT D 1 601 601 FMT FMT . 
J 2 PLP D 1 602 348 PLP LLP . 
K 4 HOH A 1 701 7 HOH HOH . 
K 4 HOH A 2 702 112 HOH HOH . 
K 4 HOH A 3 703 160 HOH HOH . 
K 4 HOH A 4 704 118 HOH HOH . 
K 4 HOH A 5 705 179 HOH HOH . 
K 4 HOH A 6 706 12 HOH HOH . 
K 4 HOH A 7 707 88 HOH HOH . 
K 4 HOH A 8 708 90 HOH HOH . 
K 4 HOH A 9 709 91 HOH HOH . 
K 4 HOH A 10 710 147 HOH HOH . 
K 4 HOH A 11 711 134 HOH HOH . 
K 4 HOH A 12 712 140 HOH HOH . 
K 4 HOH A 13 713 139 HOH HOH . 
K 4 HOH A 14 714 148 HOH HOH . 
K 4 HOH A 15 715 168 HOH HOH . 
K 4 HOH A 16 716 143 HOH HOH . 
K 4 HOH A 17 717 26 HOH HOH . 
K 4 HOH A 18 718 75 HOH HOH . 
K 4 HOH A 19 719 178 HOH HOH . 
K 4 HOH A 20 720 169 HOH HOH . 
K 4 HOH A 21 721 32 HOH HOH . 
K 4 HOH A 22 722 56 HOH HOH . 
K 4 HOH A 23 723 52 HOH HOH . 
K 4 HOH A 24 724 33 HOH HOH . 
K 4 HOH A 25 725 4 HOH HOH . 
K 4 HOH A 26 726 62 HOH HOH . 
K 4 HOH A 27 727 13 HOH HOH . 
K 4 HOH A 28 728 99 HOH HOH . 
K 4 HOH A 29 729 157 HOH HOH . 
K 4 HOH A 30 730 31 HOH HOH . 
K 4 HOH A 31 731 124 HOH HOH . 
K 4 HOH A 32 732 8 HOH HOH . 
K 4 HOH A 33 733 180 HOH HOH . 
K 4 HOH A 34 734 135 HOH HOH . 
K 4 HOH A 35 735 9 HOH HOH . 
K 4 HOH A 36 736 51 HOH HOH . 
K 4 HOH A 37 737 115 HOH HOH . 
K 4 HOH A 38 738 44 HOH HOH . 
K 4 HOH A 39 739 58 HOH HOH . 
K 4 HOH A 40 740 177 HOH HOH . 
K 4 HOH A 41 741 76 HOH HOH . 
K 4 HOH A 42 742 38 HOH HOH . 
K 4 HOH A 43 743 117 HOH HOH . 
K 4 HOH A 44 744 86 HOH HOH . 
K 4 HOH A 45 745 127 HOH HOH . 
K 4 HOH A 46 746 63 HOH HOH . 
K 4 HOH A 47 747 10 HOH HOH . 
K 4 HOH A 48 748 37 HOH HOH . 
K 4 HOH A 49 749 163 HOH HOH . 
K 4 HOH A 50 750 98 HOH HOH . 
K 4 HOH A 51 751 60 HOH HOH . 
K 4 HOH A 52 752 170 HOH HOH . 
K 4 HOH A 53 753 73 HOH HOH . 
K 4 HOH A 54 754 59 HOH HOH . 
K 4 HOH A 55 755 24 HOH HOH . 
L 4 HOH B 1 701 171 HOH HOH . 
L 4 HOH B 2 702 181 HOH HOH . 
L 4 HOH B 3 703 103 HOH HOH . 
L 4 HOH B 4 704 6 HOH HOH . 
L 4 HOH B 5 705 82 HOH HOH . 
L 4 HOH B 6 706 64 HOH HOH . 
L 4 HOH B 7 707 87 HOH HOH . 
L 4 HOH B 8 708 19 HOH HOH . 
L 4 HOH B 9 709 28 HOH HOH . 
L 4 HOH B 10 710 130 HOH HOH . 
L 4 HOH B 11 711 68 HOH HOH . 
L 4 HOH B 12 712 40 HOH HOH . 
L 4 HOH B 13 713 69 HOH HOH . 
L 4 HOH B 14 714 150 HOH HOH . 
L 4 HOH B 15 715 55 HOH HOH . 
L 4 HOH B 16 716 166 HOH HOH . 
L 4 HOH B 17 717 42 HOH HOH . 
L 4 HOH B 18 718 72 HOH HOH . 
L 4 HOH B 19 719 48 HOH HOH . 
L 4 HOH B 20 720 159 HOH HOH . 
L 4 HOH B 21 721 66 HOH HOH . 
L 4 HOH B 22 722 5 HOH HOH . 
L 4 HOH B 23 723 164 HOH HOH . 
L 4 HOH B 24 724 46 HOH HOH . 
L 4 HOH B 25 725 41 HOH HOH . 
L 4 HOH B 26 726 74 HOH HOH . 
L 4 HOH B 27 727 93 HOH HOH . 
L 4 HOH B 28 728 153 HOH HOH . 
L 4 HOH B 29 729 2 HOH HOH . 
L 4 HOH B 30 730 141 HOH HOH . 
L 4 HOH B 31 731 77 HOH HOH . 
L 4 HOH B 32 732 121 HOH HOH . 
L 4 HOH B 33 733 27 HOH HOH . 
L 4 HOH B 34 734 67 HOH HOH . 
L 4 HOH B 35 735 70 HOH HOH . 
L 4 HOH B 36 736 123 HOH HOH . 
L 4 HOH B 37 737 92 HOH HOH . 
L 4 HOH B 38 738 81 HOH HOH . 
L 4 HOH B 39 739 36 HOH HOH . 
L 4 HOH B 40 740 165 HOH HOH . 
L 4 HOH B 41 741 3 HOH HOH . 
L 4 HOH B 42 742 50 HOH HOH . 
L 4 HOH B 43 743 136 HOH HOH . 
L 4 HOH B 44 744 132 HOH HOH . 
L 4 HOH B 45 745 25 HOH HOH . 
L 4 HOH B 46 746 109 HOH HOH . 
L 4 HOH B 47 747 71 HOH HOH . 
L 4 HOH B 48 748 129 HOH HOH . 
L 4 HOH B 49 749 65 HOH HOH . 
L 4 HOH B 50 750 15 HOH HOH . 
L 4 HOH B 51 751 156 HOH HOH . 
L 4 HOH B 52 752 11 HOH HOH . 
L 4 HOH B 53 753 126 HOH HOH . 
L 4 HOH B 54 754 133 HOH HOH . 
L 4 HOH B 55 755 35 HOH HOH . 
L 4 HOH B 56 756 20 HOH HOH . 
L 4 HOH B 57 757 110 HOH HOH . 
L 4 HOH B 58 758 61 HOH HOH . 
M 4 HOH C 1 701 105 HOH HOH . 
M 4 HOH C 2 702 84 HOH HOH . 
M 4 HOH C 3 703 137 HOH HOH . 
M 4 HOH C 4 704 97 HOH HOH . 
M 4 HOH C 5 705 172 HOH HOH . 
M 4 HOH C 6 706 125 HOH HOH . 
M 4 HOH C 7 707 145 HOH HOH . 
M 4 HOH C 8 708 22 HOH HOH . 
M 4 HOH C 9 709 21 HOH HOH . 
M 4 HOH C 10 710 45 HOH HOH . 
M 4 HOH C 11 711 138 HOH HOH . 
M 4 HOH C 12 712 107 HOH HOH . 
M 4 HOH C 13 713 146 HOH HOH . 
M 4 HOH C 14 714 131 HOH HOH . 
M 4 HOH C 15 715 176 HOH HOH . 
M 4 HOH C 16 716 1 HOH HOH . 
M 4 HOH C 17 717 30 HOH HOH . 
M 4 HOH C 18 718 152 HOH HOH . 
M 4 HOH C 19 719 39 HOH HOH . 
M 4 HOH C 20 720 161 HOH HOH . 
M 4 HOH C 21 721 122 HOH HOH . 
M 4 HOH C 22 722 43 HOH HOH . 
M 4 HOH C 23 723 29 HOH HOH . 
M 4 HOH C 24 724 119 HOH HOH . 
M 4 HOH C 25 725 23 HOH HOH . 
M 4 HOH C 26 726 154 HOH HOH . 
M 4 HOH C 27 727 149 HOH HOH . 
M 4 HOH C 28 728 173 HOH HOH . 
N 4 HOH D 1 701 151 HOH HOH . 
N 4 HOH D 2 702 174 HOH HOH . 
N 4 HOH D 3 703 80 HOH HOH . 
N 4 HOH D 4 704 142 HOH HOH . 
N 4 HOH D 5 705 14 HOH HOH . 
N 4 HOH D 6 706 54 HOH HOH . 
N 4 HOH D 7 707 16 HOH HOH . 
N 4 HOH D 8 708 144 HOH HOH . 
N 4 HOH D 9 709 57 HOH HOH . 
N 4 HOH D 10 710 17 HOH HOH . 
N 4 HOH D 11 711 18 HOH HOH . 
N 4 HOH D 12 712 182 HOH HOH . 
N 4 HOH D 13 713 175 HOH HOH . 
N 4 HOH D 14 714 49 HOH HOH . 
N 4 HOH D 15 715 78 HOH HOH . 
N 4 HOH D 16 716 53 HOH HOH . 
N 4 HOH D 17 717 116 HOH HOH . 
N 4 HOH D 18 718 89 HOH HOH . 
N 4 HOH D 19 719 34 HOH HOH . 
N 4 HOH D 20 720 155 HOH HOH . 
N 4 HOH D 21 721 104 HOH HOH . 
N 4 HOH D 22 722 113 HOH HOH . 
N 4 HOH D 23 723 162 HOH HOH . 
N 4 HOH D 24 724 106 HOH HOH . 
N 4 HOH D 25 725 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . J 2 -36.472 1.819 65.626 1 60.75 ? N1 PLP 602 D 1 
HETATM 2 C C2 PLP . . . J 2 -36.385 2.302 66.86 1 60.81 ? C2 PLP 602 D 1 
HETATM 3 C C2A PLP . . . J 2 -36.442 3.781 67.056 1 60.93 ? C2A PLP 602 D 1 
HETATM 4 C C3 PLP . . . J 2 -36.243 1.443 67.955 1 60.63 ? C3 PLP 602 D 1 
HETATM 5 O O3 PLP . . . J 2 -36.158 1.983 69.188 1 60.45 ? O3 PLP 602 D 1 
HETATM 6 C C4 PLP . . . J 2 -36.198 0.059 67.75 1 60.62 ? C4 PLP 602 D 1 
HETATM 7 C C4A PLP . . . J 2 -36.065 -0.849 68.888 1 61.05 ? C4A PLP 602 D 1 
HETATM 8 C C5 PLP . . . J 2 -36.294 -0.423 66.435 1 60.25 ? C5 PLP 602 D 1 
HETATM 9 C C6 PLP . . . J 2 -36.425 0.487 65.425 1 60.6 ? C6 PLP 602 D 1 
HETATM 10 C C5A PLP . . . J 2 -36.247 -1.889 66.118 1 59.66 ? C5A PLP 602 D 1 
HETATM 11 O O4P PLP . . . J 2 -36.928 -2.181 64.861 1 58.58 ? O4P PLP 602 D 1 
HETATM 12 P P PLP . . . J 2 -37.197 -3.697 64.457 1 57.7 ? P PLP 602 D 1 
HETATM 13 O O1P PLP . . . J 2 -36.193 -4.047 63.402 1 57.95 ? O1P PLP 602 D 1 
HETATM 14 O O2P PLP . . . J 2 -36.99 -4.479 65.709 1 57.54 ? O2P PLP 602 D 1 
HETATM 15 O O3P PLP . . . J 2 -38.606 -3.746 63.96 1 58 ? O3P PLP 602 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           15 
#