data_6S98 # _model_server_result.job_id whXk-Ioq1YaWs2fjDcI2qQ _model_server_result.datetime_utc '2025-01-30 08:42:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6S98 # _exptl.entry_id 6S98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.031 _cell.angle_gamma 90 _cell.entry_id 6S98 _cell.length_a 44.812 _cell.length_b 49.05 _cell.length_c 71.926 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 118 A CYS 118 1_555 B SG CYS 118 B CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? covale ? covale1 A C ILE 94 A ILE 94 1_555 A N OCS 95 A OCS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C OCS 95 A OCS 95 1_555 A N VAL 96 A VAL 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C ILE 94 B ILE 94 1_555 B N OCS 95 B OCS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? covale ? covale4 B C OCS 95 B OCS 95 1_555 B N VAL 96 B VAL 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O VAL 98 A VAL 98 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? metalc ? metalc2 A O ILE 121 A ILE 121 1_555 E NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 A O PRO 123 A PRO 123 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc4 A OD1 ASN 124 A ASN 124 1_555 C NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc5 C NA NA . A NA 201 1_555 B O PRO 123 B PRO 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 C NA NA . A NA 201 1_555 B OD1 ASN 124 B ASN 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc7 C NA NA . A NA 201 1_555 K O HOH . B HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc8 D NA NA . A NA 202 1_555 J O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc9 D NA NA . A NA 202 1_555 K O HOH . B HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc10 E NA NA . A NA 203 1_555 J O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc11 E NA NA . A NA 203 1_555 J O HOH . A HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc12 E NA NA . A NA 203 1_555 K O HOH . B HOH 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc13 E NA NA . A NA 203 1_555 K O HOH . B HOH 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6S98 _atom_sites.fract_transf_matrix[1][1] 0.022315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 201 1 NA NA . D 2 NA A 1 202 2 NA NA . E 2 NA A 1 203 3 NA NA . F 3 EDO A 1 204 3 EDO EDO . G 4 ACT A 1 205 2 ACT ACT . H 3 EDO B 1 201 1 EDO EDO . I 4 ACT B 1 202 1 ACT ACT . J 5 HOH A 1 301 229 HOH HOH . J 5 HOH A 2 302 167 HOH HOH . J 5 HOH A 3 303 143 HOH HOH . J 5 HOH A 4 304 228 HOH HOH . J 5 HOH A 5 305 132 HOH HOH . J 5 HOH A 6 306 100 HOH HOH . J 5 HOH A 7 307 13 HOH HOH . J 5 HOH A 8 308 74 HOH HOH . J 5 HOH A 9 309 15 HOH HOH . J 5 HOH A 10 310 173 HOH HOH . J 5 HOH A 11 311 103 HOH HOH . J 5 HOH A 12 312 124 HOH HOH . J 5 HOH A 13 313 213 HOH HOH . J 5 HOH A 14 314 84 HOH HOH . J 5 HOH A 15 315 16 HOH HOH . J 5 HOH A 16 316 91 HOH HOH . J 5 HOH A 17 317 41 HOH HOH . J 5 HOH A 18 318 150 HOH HOH . J 5 HOH A 19 319 12 HOH HOH . J 5 HOH A 20 320 58 HOH HOH . J 5 HOH A 21 321 56 HOH HOH . J 5 HOH A 22 322 66 HOH HOH . J 5 HOH A 23 323 69 HOH HOH . J 5 HOH A 24 324 45 HOH HOH . J 5 HOH A 25 325 135 HOH HOH . J 5 HOH A 26 326 28 HOH HOH . J 5 HOH A 27 327 82 HOH HOH . J 5 HOH A 28 328 119 HOH HOH . J 5 HOH A 29 329 35 HOH HOH . J 5 HOH A 30 330 175 HOH HOH . J 5 HOH A 31 331 131 HOH HOH . J 5 HOH A 32 332 18 HOH HOH . J 5 HOH A 33 333 178 HOH HOH . J 5 HOH A 34 334 152 HOH HOH . J 5 HOH A 35 335 21 HOH HOH . J 5 HOH A 36 336 10 HOH HOH . J 5 HOH A 37 337 30 HOH HOH . J 5 HOH A 38 338 123 HOH HOH . J 5 HOH A 39 339 102 HOH HOH . J 5 HOH A 40 340 29 HOH HOH . J 5 HOH A 41 341 144 HOH HOH . J 5 HOH A 42 342 52 HOH HOH . J 5 HOH A 43 343 50 HOH HOH . J 5 HOH A 44 344 22 HOH HOH . J 5 HOH A 45 345 78 HOH HOH . J 5 HOH A 46 346 172 HOH HOH . J 5 HOH A 47 347 71 HOH HOH . J 5 HOH A 48 348 17 HOH HOH . J 5 HOH A 49 349 6 HOH HOH . J 5 HOH A 50 350 147 HOH HOH . J 5 HOH A 51 351 55 HOH HOH . J 5 HOH A 52 352 63 HOH HOH . J 5 HOH A 53 353 38 HOH HOH . J 5 HOH A 54 354 76 HOH HOH . J 5 HOH A 55 355 4 HOH HOH . J 5 HOH A 56 356 88 HOH HOH . J 5 HOH A 57 357 34 HOH HOH . J 5 HOH A 58 358 188 HOH HOH . J 5 HOH A 59 359 19 HOH HOH . J 5 HOH A 60 360 181 HOH HOH . J 5 HOH A 61 361 73 HOH HOH . J 5 HOH A 62 362 89 HOH HOH . J 5 HOH A 63 363 93 HOH HOH . J 5 HOH A 64 364 14 HOH HOH . J 5 HOH A 65 365 222 HOH HOH . J 5 HOH A 66 366 164 HOH HOH . J 5 HOH A 67 367 117 HOH HOH . J 5 HOH A 68 368 226 HOH HOH . J 5 HOH A 69 369 70 HOH HOH . J 5 HOH A 70 370 225 HOH HOH . J 5 HOH A 71 371 139 HOH HOH . J 5 HOH A 72 372 43 HOH HOH . J 5 HOH A 73 373 217 HOH HOH . J 5 HOH A 74 374 145 HOH HOH . J 5 HOH A 75 375 159 HOH HOH . J 5 HOH A 76 376 221 HOH HOH . J 5 HOH A 77 377 187 HOH HOH . K 5 HOH B 1 301 64 HOH HOH . K 5 HOH B 2 302 122 HOH HOH . K 5 HOH B 3 303 113 HOH HOH . K 5 HOH B 4 304 133 HOH HOH . K 5 HOH B 5 305 216 HOH HOH . K 5 HOH B 6 306 190 HOH HOH . K 5 HOH B 7 307 220 HOH HOH . K 5 HOH B 8 308 114 HOH HOH . K 5 HOH B 9 309 199 HOH HOH . K 5 HOH B 10 310 39 HOH HOH . K 5 HOH B 11 311 174 HOH HOH . K 5 HOH B 12 312 194 HOH HOH . K 5 HOH B 13 313 128 HOH HOH . K 5 HOH B 14 314 20 HOH HOH . K 5 HOH B 15 315 95 HOH HOH . K 5 HOH B 16 316 53 HOH HOH . K 5 HOH B 17 317 32 HOH HOH . K 5 HOH B 18 318 83 HOH HOH . K 5 HOH B 19 319 87 HOH HOH . K 5 HOH B 20 320 161 HOH HOH . K 5 HOH B 21 321 36 HOH HOH . K 5 HOH B 22 322 136 HOH HOH . K 5 HOH B 23 323 126 HOH HOH . K 5 HOH B 24 324 67 HOH HOH . K 5 HOH B 25 325 163 HOH HOH . K 5 HOH B 26 326 40 HOH HOH . K 5 HOH B 27 327 60 HOH HOH . K 5 HOH B 28 328 5 HOH HOH . K 5 HOH B 29 329 127 HOH HOH . K 5 HOH B 30 330 72 HOH HOH . K 5 HOH B 31 331 197 HOH HOH . K 5 HOH B 32 332 80 HOH HOH . K 5 HOH B 33 333 108 HOH HOH . K 5 HOH B 34 334 2 HOH HOH . K 5 HOH B 35 335 46 HOH HOH . K 5 HOH B 36 336 115 HOH HOH . K 5 HOH B 37 337 8 HOH HOH . K 5 HOH B 38 338 44 HOH HOH . K 5 HOH B 39 339 65 HOH HOH . K 5 HOH B 40 340 160 HOH HOH . K 5 HOH B 41 341 158 HOH HOH . K 5 HOH B 42 342 24 HOH HOH . K 5 HOH B 43 343 192 HOH HOH . K 5 HOH B 44 344 75 HOH HOH . K 5 HOH B 45 345 54 HOH HOH . K 5 HOH B 46 346 198 HOH HOH . K 5 HOH B 47 347 51 HOH HOH . K 5 HOH B 48 348 26 HOH HOH . K 5 HOH B 49 349 31 HOH HOH . K 5 HOH B 50 350 47 HOH HOH . K 5 HOH B 51 351 210 HOH HOH . K 5 HOH B 52 352 97 HOH HOH . K 5 HOH B 53 353 105 HOH HOH . K 5 HOH B 54 354 1 HOH HOH . K 5 HOH B 55 355 180 HOH HOH . K 5 HOH B 56 356 25 HOH HOH . K 5 HOH B 57 357 81 HOH HOH . K 5 HOH B 58 358 140 HOH HOH . K 5 HOH B 59 359 112 HOH HOH . K 5 HOH B 60 360 111 HOH HOH . K 5 HOH B 61 361 33 HOH HOH . K 5 HOH B 62 362 37 HOH HOH . K 5 HOH B 63 363 94 HOH HOH . K 5 HOH B 64 364 92 HOH HOH . K 5 HOH B 65 365 3 HOH HOH . K 5 HOH B 66 366 7 HOH HOH . K 5 HOH B 67 367 171 HOH HOH . K 5 HOH B 68 368 155 HOH HOH . K 5 HOH B 69 369 9 HOH HOH . K 5 HOH B 70 370 101 HOH HOH . K 5 HOH B 71 371 130 HOH HOH . K 5 HOH B 72 372 48 HOH HOH . K 5 HOH B 73 373 141 HOH HOH . K 5 HOH B 74 374 23 HOH HOH . K 5 HOH B 75 375 61 HOH HOH . K 5 HOH B 76 376 11 HOH HOH . K 5 HOH B 77 377 204 HOH HOH . K 5 HOH B 78 378 68 HOH HOH . K 5 HOH B 79 379 157 HOH HOH . K 5 HOH B 80 380 27 HOH HOH . K 5 HOH B 81 381 146 HOH HOH . K 5 HOH B 82 382 99 HOH HOH . K 5 HOH B 83 383 148 HOH HOH . K 5 HOH B 84 384 214 HOH HOH . K 5 HOH B 85 385 203 HOH HOH . K 5 HOH B 86 386 196 HOH HOH . K 5 HOH B 87 387 165 HOH HOH . K 5 HOH B 88 388 110 HOH HOH . K 5 HOH B 89 389 85 HOH HOH . K 5 HOH B 90 390 202 HOH HOH . K 5 HOH B 91 391 86 HOH HOH . K 5 HOH B 92 392 154 HOH HOH . K 5 HOH B 93 393 62 HOH HOH . K 5 HOH B 94 394 162 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.644 _atom_site.Cartn_y 18.919 _atom_site.Cartn_z -20.99 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.74 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #