data_6S9B # _model_server_result.job_id 5l9GeB9CmMsCOKdcoUB_WQ _model_server_result.datetime_utc '2025-02-05 09:58:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6S9B # _exptl.entry_id 6S9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 404.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-fluoranyl-~{N}-[1-(2-methyl-2-oxidanyl-propyl)benzimidazol-2-yl]-5-pyridin-3-yl-benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S9B _cell.length_a 144.597 _cell.length_b 144.597 _cell.length_c 144.597 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H21 F N4 O2' _chem_comp.formula_weight 404.437 _chem_comp.id L1H _chem_comp.mon_nstd_flag . _chem_comp.name 3-fluoranyl-~{N}-[1-(2-methyl-2-oxidanyl-propyl)benzimidazol-2-yl]-5-pyridin-3-yl-benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C27 C28 L1H doub 171 n y C27 C26 L1H sing 172 n y C28 N29 L1H sing 173 n y C22 C21 L1H sing 174 n n C23 C21 L1H sing 175 n n O24 C21 L1H sing 176 n n C26 C25 L1H doub 177 n y C21 C20 L1H sing 178 n n N29 C30 L1H doub 179 n y C25 C30 L1H sing 180 n y C25 C4 L1H sing 181 n n C20 N19 L1H sing 182 n n C4 C5 L1H doub 183 n y C4 C3 L1H sing 184 n y C5 C6 L1H sing 185 n y N19 C18 L1H sing 186 n y N19 C11 L1H sing 187 n y C3 C2 L1H doub 188 n y C17 C18 L1H doub 189 n y C17 C16 L1H sing 190 n y C18 C13 L1H sing 191 n y N10 C11 L1H sing 192 n n N10 C8 L1H sing 193 n n C16 C15 L1H doub 194 n y C11 N12 L1H doub 195 n y C6 C8 L1H sing 196 n n C6 C7 L1H doub 197 n y C2 C7 L1H sing 198 n y C2 F1 L1H sing 199 n n C13 N12 L1H sing 200 n y C13 C14 L1H doub 201 n y C8 O9 L1H doub 202 n n C15 C14 L1H sing 203 n y C3 H1 L1H sing 204 n n C5 H2 L1H sing 205 n n C7 H3 L1H sing 206 n n N10 H4 L1H sing 207 n n C15 H5 L1H sing 208 n n C16 H6 L1H sing 209 n n C17 H7 L1H sing 210 n n C23 H8 L1H sing 211 n n C23 H9 L1H sing 212 n n C23 H10 L1H sing 213 n n C27 H11 L1H sing 214 n n C30 H12 L1H sing 215 n n C14 H13 L1H sing 216 n n C20 H14 L1H sing 217 n n C20 H15 L1H sing 218 n n C22 H16 L1H sing 219 n n C22 H17 L1H sing 220 n n C22 H18 L1H sing 221 n n O24 H19 L1H sing 222 n n C26 H20 L1H sing 223 n n C28 H21 L1H sing 224 n n # _atom_sites.entry_id 6S9B _atom_sites.fract_transf_matrix[1][1] 0.006916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006916 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id L1H _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id L1H _pdbx_nonpoly_scheme.auth_mon_id INX _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 L1H . . . B 2 -54.545 25.096 1.098 1 81.35 ? C2 L1H 1101 A 1 HETATM 2 C C3 L1H . . . B 2 -53.755 25.807 0.192 1 85.68 ? C3 L1H 1101 A 1 HETATM 3 C C4 L1H . . . B 2 -52.575 25.244 -0.315 1 88.72 ? C4 L1H 1101 A 1 HETATM 4 C C5 L1H . . . B 2 -52.212 23.958 0.101 1 84.85 ? C5 L1H 1101 A 1 HETATM 5 C C6 L1H . . . B 2 -52.992 23.232 1.027 1 71.17 ? C6 L1H 1101 A 1 HETATM 6 C C7 L1H . . . B 2 -54.177 23.819 1.504 1 67.58 ? C7 L1H 1101 A 1 HETATM 7 C C8 L1H . . . B 2 -52.641 21.84 1.44 1 76.47 ? C8 L1H 1101 A 1 HETATM 8 O O9 L1H . . . B 2 -53.112 21.368 2.46 1 69.93 ? O9 L1H 1101 A 1 HETATM 9 N N10 L1H . . . B 2 -51.846 21.101 0.613 1 75.92 ? N10 L1H 1101 A 1 HETATM 10 C C11 L1H . . . B 2 -51.459 19.779 0.762 1 67.84 ? C11 L1H 1101 A 1 HETATM 11 C C15 L1H . . . B 2 -50.951 15.329 1.521 1 70.35 ? C15 L1H 1101 A 1 HETATM 12 C C16 L1H . . . B 2 -49.821 15.528 0.727 1 72.6 ? C16 L1H 1101 A 1 HETATM 13 C C17 L1H . . . B 2 -49.525 16.789 0.223 1 69.56 ? C17 L1H 1101 A 1 HETATM 14 C C18 L1H . . . B 2 -50.364 17.87 0.499 1 70.16 ? C18 L1H 1101 A 1 HETATM 15 C C21 L1H . . . B 2 -49.573 19.823 -2.196 1 82.33 ? C21 L1H 1101 A 1 HETATM 16 C C23 L1H . . . B 2 -50.556 20.895 -2.67 1 92.96 ? C23 L1H 1101 A 1 HETATM 17 C C27 L1H . . . B 2 -50.38 25.982 -3.32 1 116.21 ? C27 L1H 1101 A 1 HETATM 18 C C30 L1H . . . B 2 -51.472 27.35 -1.203 1 114.37 ? C30 L1H 1101 A 1 HETATM 19 F F1 L1H . . . B 2 -55.682 25.645 1.588 1 93.4 ? F1 L1H 1101 A 1 HETATM 20 N N12 L1H . . . B 2 -52.133 18.863 1.409 1 62.28 ? N12 L1H 1101 A 1 HETATM 21 C C13 L1H . . . B 2 -51.506 17.669 1.302 1 70.56 ? C13 L1H 1101 A 1 HETATM 22 C C14 L1H . . . B 2 -51.789 16.392 1.81 1 69.91 ? C14 L1H 1101 A 1 HETATM 23 N N19 L1H . . . B 2 -50.365 19.217 0.15 1 70.58 ? N19 L1H 1101 A 1 HETATM 24 C C20 L1H . . . B 2 -49.348 19.906 -0.674 1 70.51 ? C20 L1H 1101 A 1 HETATM 25 C C22 L1H . . . B 2 -48.246 20.085 -2.914 1 86.77 ? C22 L1H 1101 A 1 HETATM 26 O O24 L1H . . . B 2 -50.055 18.531 -2.589 1 92.29 ? O24 L1H 1101 A 1 HETATM 27 C C25 L1H . . . B 2 -51.721 25.974 -1.304 1 99.94 ? C25 L1H 1101 A 1 HETATM 28 C C26 L1H . . . B 2 -51.162 25.284 -2.407 1 98.6 ? C26 L1H 1101 A 1 HETATM 29 C C28 L1H . . . B 2 -50.178 27.343 -3.136 1 126.33 ? C28 L1H 1101 A 1 HETATM 30 N N29 L1H . . . B 2 -50.721 27.974 -2.102 1 126.6 ? N29 L1H 1101 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #