data_6S9C
#
_model_server_result.job_id            71N3kjCBZDdce4vv0J8-2Q 
_model_server_result.datetime_utc      '2024-12-26 18:31:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6s9c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1101}' 
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_entry.id    6S9C 
#
_exptl.entry_id    6S9C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              386.446 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[1-(2-methyl-2-oxidanyl-propyl)benzimidazol-2-yl]-2-phenyl-pyridine-4-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6S9C 
_cell.length_a            145.447 
_cell.length_b            145.447 
_cell.length_c            145.447 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6S9C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 3' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
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_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H22 N4 O2' 
_chem_comp.formula_weight    386.446 
_chem_comp.id                L1K 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[1-(2-methyl-2-oxidanyl-propyl)benzimidazol-2-yl]-2-phenyl-pyridine-4-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C26 L1K doub 182 n y 
C27 C28 L1K sing 183 n y 
O4 C2 L1K sing 184 n n 
C26 C25 L1K sing 185 n y 
C3 C2 L1K sing 186 n n 
C28 C29 L1K doub 187 n y 
C25 C24 L1K doub 188 n y 
C2 C1 L1K sing 189 n n 
C2 C5 L1K sing 190 n n 
C29 C24 L1K sing 191 n y 
C24 C22 L1K sing 192 n n 
C5 N6 L1K sing 193 n n 
C22 C23 L1K doub 194 n y 
C22 N21 L1K sing 195 n y 
N6 C7 L1K sing 196 n y 
N6 C14 L1K sing 197 n y 
C23 C18 L1K sing 198 n y 
C8 C7 L1K doub 199 n y 
C8 C9 L1K sing 200 n y 
N21 C20 L1K doub 201 n y 
C7 C12 L1K sing 202 n y 
N15 C14 L1K sing 203 n n 
N15 C16 L1K sing 204 n n 
C14 N13 L1K doub 205 n y 
C9 C10 L1K doub 206 n y 
C18 C16 L1K sing 207 n n 
C18 C19 L1K doub 208 n y 
C20 C19 L1K sing 209 n y 
C16 O17 L1K doub 210 n n 
C12 N13 L1K sing 211 n y 
C12 C11 L1K doub 212 n y 
C10 C11 L1K sing 213 n y 
C1 H1 L1K sing 214 n n 
C1 H2 L1K sing 215 n n 
C1 H3 L1K sing 216 n n 
C3 H4 L1K sing 217 n n 
C3 H5 L1K sing 218 n n 
C3 H6 L1K sing 219 n n 
C5 H7 L1K sing 220 n n 
C5 H8 L1K sing 221 n n 
C8 H9 L1K sing 222 n n 
C11 H10 L1K sing 223 n n 
C19 H11 L1K sing 224 n n 
C23 H12 L1K sing 225 n n 
C27 H13 L1K sing 226 n n 
O4 H14 L1K sing 227 n n 
C9 H15 L1K sing 228 n n 
C10 H16 L1K sing 229 n n 
N15 H17 L1K sing 230 n n 
C20 H18 L1K sing 231 n n 
C25 H19 L1K sing 232 n n 
C26 H20 L1K sing 233 n n 
C28 H21 L1K sing 234 n n 
C29 H22 L1K sing 235 n n 
#
_atom_sites.entry_id                     6S9C 
_atom_sites.fract_transf_matrix[1][1]    0.006875 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006875 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006875 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 L1K A 1 1101 1 L1K INX . 
C 3 DMS A 1 1102 1 DMS DMS . 
D 4 HOH A 1 1201 1 HOH HOH . 
D 4 HOH A 2 1202 66 HOH HOH . 
D 4 HOH A 3 1203 11 HOH HOH . 
D 4 HOH A 4 1204 30 HOH HOH . 
D 4 HOH A 5 1205 9 HOH HOH . 
D 4 HOH A 6 1206 7 HOH HOH . 
D 4 HOH A 7 1207 3 HOH HOH . 
D 4 HOH A 8 1208 33 HOH HOH . 
D 4 HOH A 9 1209 23 HOH HOH . 
D 4 HOH A 10 1210 31 HOH HOH . 
D 4 HOH A 11 1211 65 HOH HOH . 
D 4 HOH A 12 1212 2 HOH HOH . 
D 4 HOH A 13 1213 14 HOH HOH . 
D 4 HOH A 14 1214 12 HOH HOH . 
D 4 HOH A 15 1215 13 HOH HOH . 
D 4 HOH A 16 1216 22 HOH HOH . 
D 4 HOH A 17 1217 5 HOH HOH . 
D 4 HOH A 18 1218 25 HOH HOH . 
D 4 HOH A 19 1219 64 HOH HOH . 
D 4 HOH A 20 1220 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 L1K . . . B 2 -18.616 -48.138 -1.563 1 91.06 ? C1 L1K 1101 A 1 
HETATM 2 C C2 L1K . . . B 2 -19.526 -49.258 -2.093 1 85.34 ? C2 L1K 1101 A 1 
HETATM 3 C C3 L1K . . . B 2 -20.822 -48.617 -2.637 1 82.33 ? C3 L1K 1101 A 1 
HETATM 4 C C5 L1K . . . B 2 -19.968 -50.33 -1.079 1 76.01 ? C5 L1K 1101 A 1 
HETATM 5 C C7 L1K . . . B 2 -17.801 -50.923 0.382 1 71.92 ? C7 L1K 1101 A 1 
HETATM 6 C C8 L1K . . . B 2 -16.644 -50.191 0.066 1 73.79 ? C8 L1K 1101 A 1 
HETATM 7 C C11 L1K . . . B 2 -16.477 -52.065 2.106 1 74.75 ? C11 L1K 1101 A 1 
HETATM 8 C C12 L1K . . . B 2 -17.689 -51.874 1.427 1 71.02 ? C12 L1K 1101 A 1 
HETATM 9 N N13 L1K . . . B 2 -18.887 -52.47 1.58 1 69.51 ? N13 L1K 1101 A 1 
HETATM 10 C C16 L1K . . . B 2 -21.752 -53.289 1.341 1 68.65 ? C16 L1K 1101 A 1 
HETATM 11 C C18 L1K . . . B 2 -23.185 -53.589 0.998 1 68.68 ? C18 L1K 1101 A 1 
HETATM 12 C C19 L1K . . . B 2 -23.828 -54.709 1.555 1 64.01 ? C19 L1K 1101 A 1 
HETATM 13 C C23 L1K . . . B 2 -23.922 -52.864 0.032 1 70.81 ? C23 L1K 1101 A 1 
HETATM 14 C C24 L1K . . . B 2 -26.037 -52.439 -1.326 1 76.61 ? C24 L1K 1101 A 1 
HETATM 15 C C27 L1K . . . B 2 -27.555 -51.033 -3.242 1 76.09 ? C27 L1K 1101 A 1 
HETATM 16 O O4 L1K . . . B 2 -18.884 -49.928 -3.18 1 88.49 ? O4 L1K 1101 A 1 
HETATM 17 N N6 L1K . . . B 2 -19.136 -51.012 -0.053 1 73.84 ? N6 L1K 1101 A 1 
HETATM 18 C C9 L1K . . . B 2 -15.45 -50.391 0.739 1 73.99 ? C9 L1K 1101 A 1 
HETATM 19 C C10 L1K . . . B 2 -15.365 -51.327 1.761 1 76.15 ? C10 L1K 1101 A 1 
HETATM 20 C C14 L1K . . . B 2 -19.738 -51.981 0.728 1 69.1 ? C14 L1K 1101 A 1 
HETATM 21 N N15 L1K . . . B 2 -21.076 -52.367 0.602 1 66.95 ? N15 L1K 1101 A 1 
HETATM 22 O O17 L1K . . . B 2 -21.181 -53.935 2.207 1 65.17 ? O17 L1K 1101 A 1 
HETATM 23 C C20 L1K . . . B 2 -25.133 -55.012 1.19 1 67.28 ? C20 L1K 1101 A 1 
HETATM 24 N N21 L1K . . . B 2 -25.782 -54.287 0.292 1 68.2 ? N21 L1K 1101 A 1 
HETATM 25 C C22 L1K . . . B 2 -25.243 -53.218 -0.305 1 72.98 ? C22 L1K 1101 A 1 
HETATM 26 C C25 L1K . . . B 2 -25.438 -51.495 -2.197 1 76.5 ? C25 L1K 1101 A 1 
HETATM 27 C C26 L1K . . . B 2 -26.193 -50.803 -3.132 1 78.58 ? C26 L1K 1101 A 1 
HETATM 28 C C28 L1K . . . B 2 -28.163 -51.959 -2.409 1 74.7 ? C28 L1K 1101 A 1 
HETATM 29 C C29 L1K . . . B 2 -27.423 -52.658 -1.469 1 74.26 ? C29 L1K 1101 A 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           254 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           29 
#