data_6S9D # _model_server_result.job_id sXHrLqTWaPhsiGZOJ2KvJg _model_server_result.datetime_utc '2025-02-05 10:42:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 6S9D # _exptl.entry_id 6S9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.457 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-oxa-14,21,23,28-tetraazapentacyclo[23.3.1.02,7.014,22.015,20]nonacosa-1(28),2(7),3,5,15,17,19,21,25(29),26-decaen-24-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S9D _cell.length_a 145.739 _cell.length_b 145.739 _cell.length_c 145.739 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H22 N4 O2' _chem_comp.formula_weight 398.457 _chem_comp.id L3Z _chem_comp.mon_nstd_flag . _chem_comp.name 8-oxa-14,21,23,28-tetraazapentacyclo[23.3.1.02,7.014,22.015,20]nonacosa-1(28),2(7),3,5,15,17,19,21,25(29),26-decaen-24-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 L3Z sing 182 n n C17 O18 L3Z sing 183 n n C16 C15 L3Z sing 184 n n C20 C21 L3Z doub 185 n y C20 C19 L3Z sing 186 n y C21 C22 L3Z sing 187 n y O18 C19 L3Z sing 188 n n C19 C24 L3Z doub 189 n y C22 C23 L3Z doub 190 n y C15 C14 L3Z sing 191 n n C14 C13 L3Z sing 192 n n C24 C23 L3Z sing 193 n y C24 C25 L3Z sing 194 n n C13 N12 L3Z sing 195 n n C25 C30 L3Z doub 196 n y C25 N26 L3Z sing 197 n y C30 C29 L3Z sing 198 n y N26 C27 L3Z doub 199 n y C10 C11 L3Z doub 200 n y C10 C9 L3Z sing 201 n y N12 C11 L3Z sing 202 n y N12 C4 L3Z sing 203 n y C11 C6 L3Z sing 204 n y C9 C8 L3Z doub 205 n y N3 C4 L3Z sing 206 n n N3 C2 L3Z sing 207 n n C27 C28 L3Z sing 208 n y C4 N5 L3Z doub 209 n y C29 C28 L3Z doub 210 n y C29 C2 L3Z sing 211 n n C6 N5 L3Z sing 212 n y C6 C7 L3Z doub 213 n y C8 C7 L3Z sing 214 n y C2 O1 L3Z doub 215 n n C7 H1 L3Z sing 216 n n C8 H2 L3Z sing 217 n n C15 H3 L3Z sing 218 n n C15 H4 L3Z sing 219 n n C16 H5 L3Z sing 220 n n C16 H6 L3Z sing 221 n n C17 H7 L3Z sing 222 n n C17 H8 L3Z sing 223 n n C21 H9 L3Z sing 224 n n C23 H10 L3Z sing 225 n n C27 H11 L3Z sing 226 n n C30 H12 L3Z sing 227 n n N3 H13 L3Z sing 228 n n C9 H14 L3Z sing 229 n n C10 H15 L3Z sing 230 n n C13 H16 L3Z sing 231 n n C13 H17 L3Z sing 232 n n C14 H18 L3Z sing 233 n n C14 H19 L3Z sing 234 n n C20 H20 L3Z sing 235 n n C22 H21 L3Z sing 236 n n C28 H22 L3Z sing 237 n n # _atom_sites.entry_id 6S9D _atom_sites.fract_transf_matrix[1][1] 0.006862 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006862 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L3Z A 1 1101 1 L3Z INX . C 3 DMS A 1 1102 1 DMS DMS . D 4 HOH A 1 1201 37 HOH HOH . D 4 HOH A 2 1202 4 HOH HOH . D 4 HOH A 3 1203 21 HOH HOH . D 4 HOH A 4 1204 101 HOH HOH . D 4 HOH A 5 1205 122 HOH HOH . D 4 HOH A 6 1206 110 HOH HOH . D 4 HOH A 7 1207 25 HOH HOH . D 4 HOH A 8 1208 5 HOH HOH . D 4 HOH A 9 1209 1 HOH HOH . D 4 HOH A 10 1210 121 HOH HOH . D 4 HOH A 11 1211 10 HOH HOH . D 4 HOH A 12 1212 102 HOH HOH . D 4 HOH A 13 1213 9 HOH HOH . D 4 HOH A 14 1214 40 HOH HOH . D 4 HOH A 15 1215 116 HOH HOH . D 4 HOH A 16 1216 23 HOH HOH . D 4 HOH A 17 1217 100 HOH HOH . D 4 HOH A 18 1218 7 HOH HOH . D 4 HOH A 19 1219 32 HOH HOH . D 4 HOH A 20 1220 11 HOH HOH . D 4 HOH A 21 1221 119 HOH HOH . D 4 HOH A 22 1222 120 HOH HOH . D 4 HOH A 23 1223 108 HOH HOH . D 4 HOH A 24 1224 33 HOH HOH . D 4 HOH A 25 1225 99 HOH HOH . D 4 HOH A 26 1226 41 HOH HOH . D 4 HOH A 27 1227 78 HOH HOH . D 4 HOH A 28 1228 18 HOH HOH . D 4 HOH A 29 1229 17 HOH HOH . D 4 HOH A 30 1230 12 HOH HOH . D 4 HOH A 31 1231 15 HOH HOH . D 4 HOH A 32 1232 42 HOH HOH . D 4 HOH A 33 1233 38 HOH HOH . D 4 HOH A 34 1234 36 HOH HOH . D 4 HOH A 35 1235 31 HOH HOH . D 4 HOH A 36 1236 34 HOH HOH . D 4 HOH A 37 1237 24 HOH HOH . D 4 HOH A 38 1238 8 HOH HOH . D 4 HOH A 39 1239 27 HOH HOH . D 4 HOH A 40 1240 29 HOH HOH . D 4 HOH A 41 1241 109 HOH HOH . D 4 HOH A 42 1242 114 HOH HOH . D 4 HOH A 43 1243 103 HOH HOH . D 4 HOH A 44 1244 97 HOH HOH . D 4 HOH A 45 1245 45 HOH HOH . D 4 HOH A 46 1246 117 HOH HOH . D 4 HOH A 47 1247 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 L3Z . . . B 2 -22.135 -53.561 1.3 1 50.48 ? C2 L3Z 1101 A 1 HETATM 2 C C4 L3Z . . . B 2 -20.167 -52.155 0.84 1 49.33 ? C4 L3Z 1101 A 1 HETATM 3 C C6 L3Z . . . B 2 -18.04 -52.256 1.224 1 54.94 ? C6 L3Z 1101 A 1 HETATM 4 C C7 L3Z . . . B 2 -16.751 -52.553 1.666 1 60.59 ? C7 L3Z 1101 A 1 HETATM 5 C C8 L3Z . . . B 2 -15.684 -51.769 1.269 1 58.01 ? C8 L3Z 1101 A 1 HETATM 6 C C11 L3Z . . . B 2 -18.249 -51.154 0.379 1 56.58 ? C11 L3Z 1101 A 1 HETATM 7 C C15 L3Z . . . B 2 -22.18 -49.967 -2.321 1 62.94 ? C15 L3Z 1101 A 1 HETATM 8 C C16 L3Z . . . B 2 -22.71 -50.257 -3.734 1 62.86 ? C16 L3Z 1101 A 1 HETATM 9 C C17 L3Z . . . B 2 -23.325 -51.648 -3.881 1 67.48 ? C17 L3Z 1101 A 1 HETATM 10 C C19 L3Z . . . B 2 -25.5 -51.944 -2.662 1 66.88 ? C19 L3Z 1101 A 1 HETATM 11 C C21 L3Z . . . B 2 -27.626 -51.133 -3.485 1 70.77 ? C21 L3Z 1101 A 1 HETATM 12 C C23 L3Z . . . B 2 -27.579 -52.567 -1.564 1 65.61 ? C23 L3Z 1101 A 1 HETATM 13 C C24 L3Z . . . B 2 -26.176 -52.639 -1.623 1 66.04 ? C24 L3Z 1101 A 1 HETATM 14 C C27 L3Z . . . B 2 -25.458 -55.348 0.77 1 51.54 ? C27 L3Z 1101 A 1 HETATM 15 C C30 L3Z . . . B 2 -24.204 -53.122 -0.129 1 63.16 ? C30 L3Z 1101 A 1 HETATM 16 O O1 L3Z . . . B 2 -21.556 -54.294 2.079 1 54.74 ? O1 L3Z 1101 A 1 HETATM 17 N N3 L3Z . . . B 2 -21.49 -52.509 0.728 1 54.77 ? N3 L3Z 1101 A 1 HETATM 18 N N5 L3Z . . . B 2 -19.234 -52.838 1.435 1 51.28 ? N5 L3Z 1101 A 1 HETATM 19 C C9 L3Z . . . B 2 -15.888 -50.679 0.432 1 59.52 ? C9 L3Z 1101 A 1 HETATM 20 C C10 L3Z . . . B 2 -17.165 -50.367 -0.007 1 59.76 ? C10 L3Z 1101 A 1 HETATM 21 N N12 L3Z . . . B 2 -19.603 -51.132 0.119 1 52.23 ? N12 L3Z 1101 A 1 HETATM 22 C C13 L3Z . . . B 2 -20.293 -50.137 -0.712 1 53.76 ? C13 L3Z 1101 A 1 HETATM 23 C C14 L3Z . . . B 2 -20.867 -50.707 -2.021 1 60.29 ? C14 L3Z 1101 A 1 HETATM 24 O O18 L3Z . . . B 2 -24.132 -52 -2.741 1 65.93 ? O18 L3Z 1101 A 1 HETATM 25 C C20 L3Z . . . B 2 -26.249 -51.183 -3.577 1 68.5 ? C20 L3Z 1101 A 1 HETATM 26 C C22 L3Z . . . B 2 -28.283 -51.819 -2.484 1 68.16 ? C22 L3Z 1101 A 1 HETATM 27 C C25 L3Z . . . B 2 -25.474 -53.478 -0.599 1 67.74 ? C25 L3Z 1101 A 1 HETATM 28 N N26 L3Z . . . B 2 -26.056 -54.589 -0.127 1 53.88 ? N26 L3Z 1101 A 1 HETATM 29 C C28 L3Z . . . B 2 -24.197 -55.043 1.271 1 48.41 ? C28 L3Z 1101 A 1 HETATM 30 C C29 L3Z . . . B 2 -23.535 -53.877 0.861 1 53.49 ? C29 L3Z 1101 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #