data_6S9E # _model_server_result.job_id cF6KDMFt213EavscMMO60Q _model_server_result.datetime_utc '2025-01-07 08:49:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s9e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":501}' # _entry.id 6S9E # _exptl.entry_id 6S9E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S9E _cell.length_a 104.999 _cell.length_b 157.357 _cell.length_c 180.261 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S9E _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 N N N ? 10 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc8 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc9 G O2B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 H MG MG . A MG 502 1_555 DA O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc11 H MG MG . A MG 502 1_555 DA O HOH . A HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc12 H MG MG . A MG 502 1_555 DA O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc13 H MG MG . A MG 502 1_555 DA O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc14 I CA CA . A CA 503 1_555 DA O HOH . A HOH 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc15 B OE1 GLN 11 B GLN 11 1_555 O MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc16 B OE1 GLU 111 B GLU 113 1_555 P CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc17 B OE2 GLU 111 B GLU 113 1_555 P CA CA . B CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc18 N O1A GDP . B GDP 501 1_555 O MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc19 O MG MG . B MG 502 1_555 T F2 AF3 . B AF3 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.748 ? metalc ? metalc20 O MG MG . B MG 502 1_555 EA O HOH . B HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc21 O MG MG . B MG 502 1_555 EA O HOH . B HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc22 O MG MG . B MG 502 1_555 FA O HOH . C HOH 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc23 P CA CA . B CA 503 1_555 EA O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc24 P CA CA . B CA 503 1_555 FA O HOH . C HOH 605 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc25 P CA CA . B CA 503 1_555 FA O HOH . C HOH 685 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc26 C OD1 ASP 39 C ASP 39 1_555 X CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc27 C OD2 ASP 39 C ASP 39 1_555 X CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc28 C O THR 41 C THR 41 1_555 X CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc29 C OG1 THR 41 C THR 41 1_555 X CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc30 C O GLY 44 C GLY 44 1_555 X CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc31 C OE1 GLU 55 C GLU 55 1_555 X CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc32 C OE2 GLU 55 C GLU 55 1_555 X CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc33 V O3G GTP . C GTP 501 1_555 W MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc34 V O2B GTP . C GTP 501 1_555 W MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc35 W MG MG . C MG 502 1_555 FA O HOH . C HOH 614 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc36 W MG MG . C MG 502 1_555 FA O HOH . C HOH 637 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc37 W MG MG . C MG 502 1_555 FA O HOH . C HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc38 W MG MG . C MG 502 1_555 FA O HOH . C HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc39 X CA CA . C CA 503 1_555 FA O HOH . C HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc40 D OE1 GLN 11 D GLN 11 1_555 AA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc41 D OD1 ASP 177 D ASP 179 1_555 AA MG MG . D MG 502 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc42 Z O1A GDP . D GDP 501 1_555 AA MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc43 AA MG MG . D MG 502 1_555 GA O HOH . D HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc44 AA MG MG . D MG 502 1_555 GA O HOH . D HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc45 F OE1 GLU 331 F GLU 331 1_555 CA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc46 F OE2 GLU 331 F GLU 331 1_555 CA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc47 BA O2G ACP . F ACP 501 1_555 CA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? metalc ? metalc48 BA O1B ACP . F ACP 501 1_555 CA MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 137 n n PB O2B GDP sing 138 n n PB O3B GDP sing 139 n n PB O3A GDP sing 140 n n O2B HOB2 GDP sing 141 n n O3B HOB3 GDP sing 142 n n O3A PA GDP sing 143 n n PA O1A GDP doub 144 n n PA O2A GDP sing 145 n n PA O5' GDP sing 146 n n O2A HOA2 GDP sing 147 n n O5' C5' GDP sing 148 n n C5' C4' GDP sing 149 n n C5' H5' GDP sing 150 n n C5' "H5''" GDP sing 151 n n C4' O4' GDP sing 152 n n C4' C3' GDP sing 153 n n C4' H4' GDP sing 154 n n O4' C1' GDP sing 155 n n C3' O3' GDP sing 156 n n C3' C2' GDP sing 157 n n C3' H3' GDP sing 158 n n O3' HO3' GDP sing 159 n n C2' O2' GDP sing 160 n n C2' C1' GDP sing 161 n n C2' H2' GDP sing 162 n n O2' HO2' GDP sing 163 n n C1' N9 GDP sing 164 n n C1' H1' GDP sing 165 n n N9 C8 GDP sing 166 n y N9 C4 GDP sing 167 n y C8 N7 GDP doub 168 n y C8 H8 GDP sing 169 n n N7 C5 GDP sing 170 n y C5 C6 GDP sing 171 n n C5 C4 GDP doub 172 n y C6 O6 GDP doub 173 n n C6 N1 GDP sing 174 n n N1 C2 GDP sing 175 n n N1 HN1 GDP sing 176 n n C2 N2 GDP sing 177 n n C2 N3 GDP doub 178 n n N2 HN21 GDP sing 179 n n N2 HN22 GDP sing 180 n n N3 C4 GDP sing 181 n n # _atom_sites.entry_id 6S9E _atom_sites.fract_transf_matrix[1][1] 0.009524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005548 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 CL A 1 504 504 CL CL . K 9 GOL A 1 505 505 GOL GOL . L 9 GOL A 1 506 506 GOL GOL . M 9 GOL A 1 507 507 GOL GOL . N 10 GDP B 1 501 501 GDP GDP . O 6 MG B 1 502 502 MG MG . P 7 CA B 1 503 503 CA CA . Q 11 MES B 1 504 504 MES MES . R 11 MES B 1 505 505 MES MES . S 9 GOL B 1 506 506 GOL GOL . T 12 AF3 B 1 507 507 AF3 AF3 . U 9 GOL B 1 508 508 GOL GOL . V 5 GTP C 1 501 501 GTP GTP . W 6 MG C 1 502 502 MG MG . X 7 CA C 1 503 503 CA CA . Y 13 IMD C 1 504 504 IMD IMD . Z 10 GDP D 1 501 501 GDP GDP . AA 6 MG D 1 502 502 MG MG . BA 14 ACP F 1 501 501 ACP ACP . CA 6 MG F 1 502 502 MG MG . DA 15 HOH A 1 601 23 HOH HOH . DA 15 HOH A 2 602 77 HOH HOH . DA 15 HOH A 3 603 35 HOH HOH . DA 15 HOH A 4 604 170 HOH HOH . DA 15 HOH A 5 605 46 HOH HOH . DA 15 HOH A 6 606 24 HOH HOH . DA 15 HOH A 7 607 48 HOH HOH . DA 15 HOH A 8 608 137 HOH HOH . DA 15 HOH A 9 609 11 HOH HOH . DA 15 HOH A 10 610 3 HOH HOH . DA 15 HOH A 11 611 66 HOH HOH . DA 15 HOH A 12 612 37 HOH HOH . DA 15 HOH A 13 613 75 HOH HOH . DA 15 HOH A 14 614 181 HOH HOH . DA 15 HOH A 15 615 130 HOH HOH . DA 15 HOH A 16 616 64 HOH HOH . DA 15 HOH A 17 617 1 HOH HOH . DA 15 HOH A 18 618 65 HOH HOH . DA 15 HOH A 19 619 43 HOH HOH . DA 15 HOH A 20 620 36 HOH HOH . DA 15 HOH A 21 621 140 HOH HOH . DA 15 HOH A 22 622 115 HOH HOH . DA 15 HOH A 23 623 60 HOH HOH . DA 15 HOH A 24 624 186 HOH HOH . DA 15 HOH A 25 625 185 HOH HOH . DA 15 HOH A 26 626 47 HOH HOH . DA 15 HOH A 27 627 78 HOH HOH . DA 15 HOH A 28 628 2 HOH HOH . DA 15 HOH A 29 629 155 HOH HOH . DA 15 HOH A 30 630 165 HOH HOH . DA 15 HOH A 31 631 182 HOH HOH . DA 15 HOH A 32 632 113 HOH HOH . DA 15 HOH A 33 633 199 HOH HOH . DA 15 HOH A 34 634 104 HOH HOH . DA 15 HOH A 35 635 100 HOH HOH . DA 15 HOH A 36 636 142 HOH HOH . DA 15 HOH A 37 637 83 HOH HOH . DA 15 HOH A 38 638 120 HOH HOH . DA 15 HOH A 39 639 187 HOH HOH . EA 15 HOH B 1 601 92 HOH HOH . EA 15 HOH B 2 602 10 HOH HOH . EA 15 HOH B 3 603 15 HOH HOH . EA 15 HOH B 4 604 143 HOH HOH . EA 15 HOH B 5 605 189 HOH HOH . EA 15 HOH B 6 606 91 HOH HOH . EA 15 HOH B 7 607 39 HOH HOH . EA 15 HOH B 8 608 179 HOH HOH . EA 15 HOH B 9 609 169 HOH HOH . EA 15 HOH B 10 610 22 HOH HOH . EA 15 HOH B 11 611 166 HOH HOH . EA 15 HOH B 12 612 196 HOH HOH . EA 15 HOH B 13 613 197 HOH HOH . EA 15 HOH B 14 614 87 HOH HOH . EA 15 HOH B 15 615 125 HOH HOH . EA 15 HOH B 16 616 188 HOH HOH . EA 15 HOH B 17 617 128 HOH HOH . EA 15 HOH B 18 618 118 HOH HOH . EA 15 HOH B 19 619 20 HOH HOH . EA 15 HOH B 20 620 138 HOH HOH . EA 15 HOH B 21 621 90 HOH HOH . EA 15 HOH B 22 622 28 HOH HOH . EA 15 HOH B 23 623 45 HOH HOH . EA 15 HOH B 24 624 76 HOH HOH . EA 15 HOH B 25 625 42 HOH HOH . EA 15 HOH B 26 626 178 HOH HOH . EA 15 HOH B 27 627 135 HOH HOH . EA 15 HOH B 28 628 49 HOH HOH . EA 15 HOH B 29 629 33 HOH HOH . EA 15 HOH B 30 630 123 HOH HOH . EA 15 HOH B 31 631 153 HOH HOH . EA 15 HOH B 32 632 84 HOH HOH . EA 15 HOH B 33 633 163 HOH HOH . EA 15 HOH B 34 634 150 HOH HOH . EA 15 HOH B 35 635 126 HOH HOH . EA 15 HOH B 36 636 154 HOH HOH . EA 15 HOH B 37 637 190 HOH HOH . EA 15 HOH B 38 638 162 HOH HOH . EA 15 HOH B 39 639 133 HOH HOH . EA 15 HOH B 40 640 109 HOH HOH . FA 15 HOH C 1 601 105 HOH HOH . FA 15 HOH C 2 602 101 HOH HOH . FA 15 HOH C 3 603 12 HOH HOH . FA 15 HOH C 4 604 55 HOH HOH . FA 15 HOH C 5 605 9 HOH HOH . FA 15 HOH C 6 606 18 HOH HOH . FA 15 HOH C 7 607 29 HOH HOH . FA 15 HOH C 8 608 72 HOH HOH . FA 15 HOH C 9 609 119 HOH HOH . FA 15 HOH C 10 610 71 HOH HOH . FA 15 HOH C 11 611 73 HOH HOH . FA 15 HOH C 12 612 21 HOH HOH . FA 15 HOH C 13 613 51 HOH HOH . FA 15 HOH C 14 614 5 HOH HOH . FA 15 HOH C 15 615 97 HOH HOH . FA 15 HOH C 16 616 59 HOH HOH . FA 15 HOH C 17 617 70 HOH HOH . FA 15 HOH C 18 618 19 HOH HOH . FA 15 HOH C 19 619 98 HOH HOH . FA 15 HOH C 20 620 26 HOH HOH . FA 15 HOH C 21 621 44 HOH HOH . FA 15 HOH C 22 622 54 HOH HOH . FA 15 HOH C 23 623 86 HOH HOH . FA 15 HOH C 24 624 106 HOH HOH . FA 15 HOH C 25 625 180 HOH HOH . FA 15 HOH C 26 626 167 HOH HOH . FA 15 HOH C 27 627 94 HOH HOH . FA 15 HOH C 28 628 27 HOH HOH . FA 15 HOH C 29 629 67 HOH HOH . FA 15 HOH C 30 630 53 HOH HOH . FA 15 HOH C 31 631 176 HOH HOH . FA 15 HOH C 32 632 16 HOH HOH . FA 15 HOH C 33 633 41 HOH HOH . FA 15 HOH C 34 634 30 HOH HOH . FA 15 HOH C 35 635 74 HOH HOH . FA 15 HOH C 36 636 32 HOH HOH . FA 15 HOH C 37 637 4 HOH HOH . FA 15 HOH C 38 638 173 HOH HOH . FA 15 HOH C 39 639 147 HOH HOH . FA 15 HOH C 40 640 145 HOH HOH . FA 15 HOH C 41 641 158 HOH HOH . FA 15 HOH C 42 642 68 HOH HOH . FA 15 HOH C 43 643 151 HOH HOH . FA 15 HOH C 44 644 132 HOH HOH . FA 15 HOH C 45 645 171 HOH HOH . FA 15 HOH C 46 646 57 HOH HOH . FA 15 HOH C 47 647 79 HOH HOH . FA 15 HOH C 48 648 85 HOH HOH . FA 15 HOH C 49 649 69 HOH HOH . FA 15 HOH C 50 650 127 HOH HOH . FA 15 HOH C 51 651 177 HOH HOH . FA 15 HOH C 52 652 89 HOH HOH . FA 15 HOH C 53 653 160 HOH HOH . FA 15 HOH C 54 654 7 HOH HOH . FA 15 HOH C 55 655 108 HOH HOH . FA 15 HOH C 56 656 107 HOH HOH . FA 15 HOH C 57 657 38 HOH HOH . FA 15 HOH C 58 658 34 HOH HOH . FA 15 HOH C 59 659 129 HOH HOH . FA 15 HOH C 60 660 96 HOH HOH . FA 15 HOH C 61 661 121 HOH HOH . FA 15 HOH C 62 662 61 HOH HOH . FA 15 HOH C 63 663 6 HOH HOH . FA 15 HOH C 64 664 117 HOH HOH . FA 15 HOH C 65 665 52 HOH HOH . FA 15 HOH C 66 666 139 HOH HOH . FA 15 HOH C 67 667 62 HOH HOH . FA 15 HOH C 68 668 195 HOH HOH . FA 15 HOH C 69 669 17 HOH HOH . FA 15 HOH C 70 670 116 HOH HOH . FA 15 HOH C 71 671 148 HOH HOH . FA 15 HOH C 72 672 63 HOH HOH . FA 15 HOH C 73 673 141 HOH HOH . FA 15 HOH C 74 674 88 HOH HOH . FA 15 HOH C 75 675 184 HOH HOH . FA 15 HOH C 76 676 131 HOH HOH . FA 15 HOH C 77 677 159 HOH HOH . FA 15 HOH C 78 678 14 HOH HOH . FA 15 HOH C 79 679 183 HOH HOH . FA 15 HOH C 80 680 99 HOH HOH . FA 15 HOH C 81 681 111 HOH HOH . FA 15 HOH C 82 682 80 HOH HOH . FA 15 HOH C 83 683 149 HOH HOH . FA 15 HOH C 84 684 93 HOH HOH . FA 15 HOH C 85 685 191 HOH HOH . FA 15 HOH C 86 686 40 HOH HOH . FA 15 HOH C 87 687 112 HOH HOH . FA 15 HOH C 88 688 95 HOH HOH . FA 15 HOH C 89 689 124 HOH HOH . FA 15 HOH C 90 690 192 HOH HOH . FA 15 HOH C 91 691 110 HOH HOH . FA 15 HOH C 92 692 164 HOH HOH . FA 15 HOH C 93 693 146 HOH HOH . FA 15 HOH C 94 694 58 HOH HOH . FA 15 HOH C 95 695 168 HOH HOH . FA 15 HOH C 96 696 161 HOH HOH . FA 15 HOH C 97 697 193 HOH HOH . FA 15 HOH C 98 698 175 HOH HOH . FA 15 HOH C 99 699 152 HOH HOH . GA 15 HOH D 1 601 8 HOH HOH . GA 15 HOH D 2 602 13 HOH HOH . GA 15 HOH D 3 603 81 HOH HOH . GA 15 HOH D 4 604 157 HOH HOH . GA 15 HOH D 5 605 56 HOH HOH . GA 15 HOH D 6 606 50 HOH HOH . GA 15 HOH D 7 607 136 HOH HOH . GA 15 HOH D 8 608 103 HOH HOH . GA 15 HOH D 9 609 102 HOH HOH . GA 15 HOH D 10 610 31 HOH HOH . GA 15 HOH D 11 611 174 HOH HOH . GA 15 HOH D 12 612 25 HOH HOH . GA 15 HOH D 13 613 198 HOH HOH . GA 15 HOH D 14 614 144 HOH HOH . HA 15 HOH E 1 201 194 HOH HOH . HA 15 HOH E 2 202 122 HOH HOH . HA 15 HOH E 3 203 156 HOH HOH . HA 15 HOH E 4 204 172 HOH HOH . IA 15 HOH F 1 601 82 HOH HOH . IA 15 HOH F 2 602 114 HOH HOH . IA 15 HOH F 3 603 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . N 10 18.96 49.187 16.075 1 42.15 ? PB GDP 501 B 1 HETATM 2 O O1B GDP . . . N 10 18.626 50.201 15.012 1 28.33 ? O1B GDP 501 B 1 HETATM 3 O O2B GDP . . . N 10 20.091 48.306 15.605 1 37.05 ? O2B GDP 501 B 1 HETATM 4 O O3B GDP . . . N 10 19.385 49.885 17.346 1 32.04 ? O3B GDP 501 B 1 HETATM 5 O O3A GDP . . . N 10 17.687 48.244 16.331 1 34.85 ? O3A GDP 501 B 1 HETATM 6 P PA GDP . . . N 10 16.349 48.741 17.074 1 35.33 ? PA GDP 501 B 1 HETATM 7 O O1A GDP . . . N 10 15.181 48.689 16.116 1 32.74 ? O1A GDP 501 B 1 HETATM 8 O O2A GDP . . . N 10 16.51 50.123 17.667 1 34.94 ? O2A GDP 501 B 1 HETATM 9 O O5' GDP . . . N 10 16.217 47.645 18.238 1 34.58 ? O5' GDP 501 B 1 HETATM 10 C C5' GDP . . . N 10 15.102 46.759 18.326 1 34.63 ? C5' GDP 501 B 1 HETATM 11 C C4' GDP . . . N 10 14.607 46.8 19.761 1 37.92 ? C4' GDP 501 B 1 HETATM 12 O O4' GDP . . . N 10 14.206 48.142 20.022 1 37.27 ? O4' GDP 501 B 1 HETATM 13 C C3' GDP . . . N 10 13.385 45.932 19.989 1 36.3 ? C3' GDP 501 B 1 HETATM 14 O O3' GDP . . . N 10 13.353 45.476 21.346 1 38.74 ? O3' GDP 501 B 1 HETATM 15 C C2' GDP . . . N 10 12.223 46.859 19.724 1 45.68 ? C2' GDP 501 B 1 HETATM 16 O O2' GDP . . . N 10 11.076 46.497 20.493 1 45.99 ? O2' GDP 501 B 1 HETATM 17 C C1' GDP . . . N 10 12.783 48.209 20.131 1 31.95 ? C1' GDP 501 B 1 HETATM 18 N N9 GDP . . . N 10 12.308 49.3 19.26 1 40.68 ? N9 GDP 501 B 1 HETATM 19 C C8 GDP . . . N 10 12.561 49.476 17.95 1 44.84 ? C8 GDP 501 B 1 HETATM 20 N N7 GDP . . . N 10 11.97 50.614 17.498 1 39.64 ? N7 GDP 501 B 1 HETATM 21 C C5 GDP . . . N 10 11.342 51.174 18.544 1 43.51 ? C5 GDP 501 B 1 HETATM 22 C C6 GDP . . . N 10 10.526 52.379 18.788 1 45.04 ? C6 GDP 501 B 1 HETATM 23 O O6 GDP . . . N 10 10.259 53.194 17.882 1 44.05 ? O6 GDP 501 B 1 HETATM 24 N N1 GDP . . . N 10 10.071 52.58 20.02 1 42.49 ? N1 GDP 501 B 1 HETATM 25 C C2 GDP . . . N 10 10.311 51.751 21.049 1 42.12 ? C2 GDP 501 B 1 HETATM 26 N N2 GDP . . . N 10 9.801 52.05 22.263 1 44.77 ? N2 GDP 501 B 1 HETATM 27 N N3 GDP . . . N 10 11.048 50.627 20.908 1 36.53 ? N3 GDP 501 B 1 HETATM 28 C C4 GDP . . . N 10 11.572 50.308 19.703 1 37.42 ? C4 GDP 501 B 1 HETATM 29 H H4' GDP . . . N 10 15.413 46.494 20.442 1 46.17 ? H4' GDP 501 B 1 HETATM 30 H H3' GDP . . . N 10 13.374 45.094 19.279 1 44.24 ? H3' GDP 501 B 1 HETATM 31 H H2' GDP . . . N 10 11.991 46.863 18.65 1 55.48 ? H2' GDP 501 B 1 HETATM 32 H HO2' GDP . . . N 10 10.789 45.608 20.245 1 55.85 ? HO2' GDP 501 B 1 HETATM 33 H H1' GDP . . . N 10 12.497 48.411 21.173 1 39.01 ? H1' GDP 501 B 1 HETATM 34 H H8 GDP . . . N 10 13.147 48.801 17.338 1 54.48 ? H8 GDP 501 B 1 HETATM 35 H HN1 GDP . . . N 10 9.493 53.427 20.197 1 51.65 ? HN1 GDP 501 B 1 HETATM 36 H HN21 GDP . . . N 10 9.246 52.886 22.386 1 54.4 ? HN21 GDP 501 B 1 HETATM 37 H HN22 GDP . . . N 10 9.973 51.439 23.048 1 54.4 ? HN22 GDP 501 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 37 #