data_6S9Q # _model_server_result.job_id 9R68TNgmiRpUm5_aMOYQNg _model_server_result.datetime_utc '2025-07-05 13:22:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6S9Q # _exptl.entry_id 6S9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 216.302 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-methyl-5-phenyl-thiophene-2-carboximidamide _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6S9Q _cell.length_a 82.105 _cell.length_b 111.85 _cell.length_c 62.703 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LYS 5 P LYS 386 1_555 B N TPO 6 P TPO 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 B C TPO 6 P TPO 387 1_555 B N GLU 7 P GLU 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 F CA CA . A CA 304 1_555 G O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc2 F CA CA . A CA 304 1_555 G O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? # _chem_comp.formula 'C12 H12 N2 S' _chem_comp.formula_weight 216.302 _chem_comp.id L1T _chem_comp.mon_nstd_flag . _chem_comp.name 4-methyl-5-phenyl-thiophene-2-carboximidamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C10 L1T doub 173 n y C9 C8 L1T sing 174 n y C10 C11 L1T sing 175 n y C8 C7 L1T doub 176 n y C11 C12 L1T doub 177 n y C7 C12 L1T sing 178 n y C7 C6 L1T sing 179 n n S1 C6 L1T sing 180 n y S1 C4 L1T sing 181 n y N2 C5 L1T doub 182 n n C6 C2 L1T doub 183 n y C5 C4 L1T sing 184 n n C5 N1 L1T sing 185 n n C4 C3 L1T doub 186 n y C2 C3 L1T sing 187 n y C2 C1 L1T sing 188 n n N1 H15 L1T sing 189 n n C8 H81 L1T sing 190 n n C10 H101 L1T sing 191 n n C1 H12 L1T sing 192 n n C1 H13 L1T sing 193 n n C1 H11 L1T sing 194 n n C11 H111 L1T sing 195 n n C12 H121 L1T sing 196 n n C3 H31 L1T sing 197 n n C9 H91 L1T sing 198 n n N2 H1 L1T sing 199 n n N1 H14 L1T sing 200 n n # _atom_sites.entry_id 6S9Q _atom_sites.fract_transf_matrix[1][1] 0.01218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008941 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 L1T A 1 301 1 L1T LIG . D 3 L1T A 1 302 2 L1T LIG . E 3 L1T A 1 303 3 L1T LIG . F 4 CA A 1 304 1 CA CA . G 5 HOH A 1 401 100 HOH HOH . G 5 HOH A 2 402 90 HOH HOH . G 5 HOH A 3 403 13 HOH HOH . G 5 HOH A 4 404 145 HOH HOH . G 5 HOH A 5 405 154 HOH HOH . G 5 HOH A 6 406 104 HOH HOH . G 5 HOH A 7 407 15 HOH HOH . G 5 HOH A 8 408 139 HOH HOH . G 5 HOH A 9 409 157 HOH HOH . G 5 HOH A 10 410 116 HOH HOH . G 5 HOH A 11 411 147 HOH HOH . G 5 HOH A 12 412 7 HOH HOH . G 5 HOH A 13 413 62 HOH HOH . G 5 HOH A 14 414 81 HOH HOH . G 5 HOH A 15 415 180 HOH HOH . G 5 HOH A 16 416 54 HOH HOH . G 5 HOH A 17 417 143 HOH HOH . G 5 HOH A 18 418 168 HOH HOH . G 5 HOH A 19 419 128 HOH HOH . G 5 HOH A 20 420 108 HOH HOH . G 5 HOH A 21 421 26 HOH HOH . G 5 HOH A 22 422 65 HOH HOH . G 5 HOH A 23 423 167 HOH HOH . G 5 HOH A 24 424 32 HOH HOH . G 5 HOH A 25 425 1 HOH HOH . G 5 HOH A 26 426 112 HOH HOH . G 5 HOH A 27 427 148 HOH HOH . G 5 HOH A 28 428 36 HOH HOH . G 5 HOH A 29 429 58 HOH HOH . G 5 HOH A 30 430 6 HOH HOH . G 5 HOH A 31 431 78 HOH HOH . G 5 HOH A 32 432 132 HOH HOH . G 5 HOH A 33 433 51 HOH HOH . G 5 HOH A 34 434 66 HOH HOH . G 5 HOH A 35 435 56 HOH HOH . G 5 HOH A 36 436 42 HOH HOH . G 5 HOH A 37 437 8 HOH HOH . G 5 HOH A 38 438 86 HOH HOH . G 5 HOH A 39 439 5 HOH HOH . G 5 HOH A 40 440 72 HOH HOH . G 5 HOH A 41 441 4 HOH HOH . G 5 HOH A 42 442 43 HOH HOH . G 5 HOH A 43 443 59 HOH HOH . G 5 HOH A 44 444 16 HOH HOH . G 5 HOH A 45 445 9 HOH HOH . G 5 HOH A 46 446 91 HOH HOH . G 5 HOH A 47 447 88 HOH HOH . G 5 HOH A 48 448 45 HOH HOH . G 5 HOH A 49 449 2 HOH HOH . G 5 HOH A 50 450 35 HOH HOH . G 5 HOH A 51 451 135 HOH HOH . G 5 HOH A 52 452 14 HOH HOH . G 5 HOH A 53 453 69 HOH HOH . G 5 HOH A 54 454 50 HOH HOH . G 5 HOH A 55 455 33 HOH HOH . G 5 HOH A 56 456 31 HOH HOH . G 5 HOH A 57 457 29 HOH HOH . G 5 HOH A 58 458 103 HOH HOH . G 5 HOH A 59 459 11 HOH HOH . G 5 HOH A 60 460 77 HOH HOH . G 5 HOH A 61 461 137 HOH HOH . G 5 HOH A 62 462 53 HOH HOH . G 5 HOH A 63 463 48 HOH HOH . G 5 HOH A 64 464 67 HOH HOH . G 5 HOH A 65 465 38 HOH HOH . G 5 HOH A 66 466 17 HOH HOH . G 5 HOH A 67 467 39 HOH HOH . G 5 HOH A 68 468 82 HOH HOH . G 5 HOH A 69 469 25 HOH HOH . G 5 HOH A 70 470 95 HOH HOH . G 5 HOH A 71 471 22 HOH HOH . G 5 HOH A 72 472 41 HOH HOH . G 5 HOH A 73 473 181 HOH HOH . G 5 HOH A 74 474 172 HOH HOH . G 5 HOH A 75 475 12 HOH HOH . G 5 HOH A 76 476 37 HOH HOH . G 5 HOH A 77 477 138 HOH HOH . G 5 HOH A 78 478 159 HOH HOH . G 5 HOH A 79 479 64 HOH HOH . G 5 HOH A 80 480 71 HOH HOH . G 5 HOH A 81 481 44 HOH HOH . G 5 HOH A 82 482 79 HOH HOH . G 5 HOH A 83 483 28 HOH HOH . G 5 HOH A 84 484 23 HOH HOH . G 5 HOH A 85 485 10 HOH HOH . G 5 HOH A 86 486 173 HOH HOH . G 5 HOH A 87 487 131 HOH HOH . G 5 HOH A 88 488 57 HOH HOH . G 5 HOH A 89 489 70 HOH HOH . G 5 HOH A 90 490 96 HOH HOH . G 5 HOH A 91 491 73 HOH HOH . G 5 HOH A 92 492 146 HOH HOH . G 5 HOH A 93 493 98 HOH HOH . G 5 HOH A 94 494 83 HOH HOH . G 5 HOH A 95 495 152 HOH HOH . G 5 HOH A 96 496 20 HOH HOH . G 5 HOH A 97 497 40 HOH HOH . G 5 HOH A 98 498 155 HOH HOH . G 5 HOH A 99 499 24 HOH HOH . G 5 HOH A 100 500 133 HOH HOH . G 5 HOH A 101 501 52 HOH HOH . G 5 HOH A 102 502 175 HOH HOH . G 5 HOH A 103 503 55 HOH HOH . G 5 HOH A 104 504 115 HOH HOH . G 5 HOH A 105 505 121 HOH HOH . G 5 HOH A 106 506 125 HOH HOH . G 5 HOH A 107 507 92 HOH HOH . G 5 HOH A 108 508 122 HOH HOH . G 5 HOH A 109 509 111 HOH HOH . G 5 HOH A 110 510 151 HOH HOH . G 5 HOH A 111 511 3 HOH HOH . G 5 HOH A 112 512 75 HOH HOH . G 5 HOH A 113 513 27 HOH HOH . G 5 HOH A 114 514 60 HOH HOH . G 5 HOH A 115 515 46 HOH HOH . G 5 HOH A 116 516 177 HOH HOH . G 5 HOH A 117 517 61 HOH HOH . G 5 HOH A 118 518 74 HOH HOH . G 5 HOH A 119 519 106 HOH HOH . G 5 HOH A 120 520 21 HOH HOH . G 5 HOH A 121 521 107 HOH HOH . G 5 HOH A 122 522 34 HOH HOH . G 5 HOH A 123 523 76 HOH HOH . G 5 HOH A 124 524 149 HOH HOH . G 5 HOH A 125 525 94 HOH HOH . G 5 HOH A 126 526 113 HOH HOH . G 5 HOH A 127 527 160 HOH HOH . G 5 HOH A 128 528 119 HOH HOH . G 5 HOH A 129 529 110 HOH HOH . G 5 HOH A 130 530 85 HOH HOH . G 5 HOH A 131 531 163 HOH HOH . G 5 HOH A 132 532 158 HOH HOH . G 5 HOH A 133 533 144 HOH HOH . G 5 HOH A 134 534 49 HOH HOH . G 5 HOH A 135 535 156 HOH HOH . G 5 HOH A 136 536 153 HOH HOH . G 5 HOH A 137 537 120 HOH HOH . G 5 HOH A 138 538 179 HOH HOH . G 5 HOH A 139 539 123 HOH HOH . G 5 HOH A 140 540 84 HOH HOH . G 5 HOH A 141 541 136 HOH HOH . G 5 HOH A 142 542 109 HOH HOH . G 5 HOH A 143 543 68 HOH HOH . G 5 HOH A 144 544 142 HOH HOH . G 5 HOH A 145 545 101 HOH HOH . G 5 HOH A 146 546 176 HOH HOH . G 5 HOH A 147 547 30 HOH HOH . G 5 HOH A 148 548 178 HOH HOH . G 5 HOH A 149 549 80 HOH HOH . G 5 HOH A 150 550 129 HOH HOH . G 5 HOH A 151 551 182 HOH HOH . G 5 HOH A 152 552 150 HOH HOH . G 5 HOH A 153 553 130 HOH HOH . G 5 HOH A 154 554 97 HOH HOH . G 5 HOH A 155 555 89 HOH HOH . G 5 HOH A 156 556 87 HOH HOH . G 5 HOH A 157 557 162 HOH HOH . G 5 HOH A 158 558 99 HOH HOH . G 5 HOH A 159 559 134 HOH HOH . G 5 HOH A 160 560 102 HOH HOH . G 5 HOH A 161 561 47 HOH HOH . G 5 HOH A 162 562 93 HOH HOH . G 5 HOH A 163 563 126 HOH HOH . G 5 HOH A 164 564 18 HOH HOH . G 5 HOH A 165 565 105 HOH HOH . G 5 HOH A 166 566 161 HOH HOH . G 5 HOH A 167 567 184 HOH HOH . G 5 HOH A 168 568 127 HOH HOH . G 5 HOH A 169 569 118 HOH HOH . G 5 HOH A 170 570 141 HOH HOH . G 5 HOH A 171 571 183 HOH HOH . G 5 HOH A 172 572 171 HOH HOH . H 5 HOH P 1 401 19 HOH HOH . H 5 HOH P 2 402 185 HOH HOH . H 5 HOH P 3 403 114 HOH HOH . H 5 HOH P 4 404 169 HOH HOH . H 5 HOH P 5 405 63 HOH HOH . H 5 HOH P 6 406 140 HOH HOH . H 5 HOH P 7 407 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 L1T . . . C 3 -21.297 -16.046 -7.943 1 17.05 ? N1 L1T 301 A 1 HETATM 2 C C4 L1T . . . C 3 -20.267 -17.81 -6.818 1 17.35 ? C4 L1T 301 A 1 HETATM 3 C C5 L1T . . . C 3 -20.655 -16.341 -6.919 1 17.13 ? C5 L1T 301 A 1 HETATM 4 C C6 L1T . . . C 3 -19.982 -20.261 -7.404 1 24.75 ? C6 L1T 301 A 1 HETATM 5 C C7 L1T . . . C 3 -20.04 -21.597 -8.093 1 21.98 ? C7 L1T 301 A 1 HETATM 6 C C8 L1T . . . C 3 -19.984 -21.609 -9.632 1 20.27 ? C8 L1T 301 A 1 HETATM 7 C C10 L1T . . . C 3 -20.161 -24.056 -9.552 1 16.78 ? C10 L1T 301 A 1 HETATM 8 C C1 L1T . . . C 3 -18.646 -21.003 -5.237 1 30.38 ? C1 L1T 301 A 1 HETATM 9 C C11 L1T . . . C 3 -20.229 -24.054 -8.222 1 22.59 ? C11 L1T 301 A 1 HETATM 10 C C12 L1T . . . C 3 -20.155 -22.716 -7.44 1 23.32 ? C12 L1T 301 A 1 HETATM 11 C C2 L1T . . . C 3 -19.361 -19.969 -6.11 1 24.83 ? C2 L1T 301 A 1 HETATM 12 C C3 L1T . . . C 3 -19.521 -18.49 -5.763 1 21.31 ? C3 L1T 301 A 1 HETATM 13 C C9 L1T . . . C 3 -20.042 -22.751 -10.307 1 20.06 ? C9 L1T 301 A 1 HETATM 14 N N2 L1T . . . C 3 -20.301 -15.513 -6.045 1 19.59 ? N2 L1T 301 A 1 HETATM 15 S S1 L1T . . . C 3 -20.686 -18.866 -8.069 1 22.86 ? S1 L1T 301 A 1 HETATM 16 H H15 L1T . . . C 3 -20.53 -14.684 -6.132 1 23.51 ? H15 L1T 301 A 1 HETATM 17 H H81 L1T . . . C 3 -19.908 -20.805 -10.095 1 24.33 ? H81 L1T 301 A 1 HETATM 18 H H101 L1T . . . C 3 -20.187 -24.861 -10.017 1 20.14 ? H101 L1T 301 A 1 HETATM 19 H H12 L1T . . . C 3 -18.086 -21.566 -5.794 1 36.46 ? H12 L1T 301 A 1 HETATM 20 H H13 L1T . . . C 3 -19.303 -21.552 -4.781 1 36.46 ? H13 L1T 301 A 1 HETATM 21 H H11 L1T . . . C 3 -18.095 -20.548 -4.581 1 36.46 ? H11 L1T 301 A 1 HETATM 22 H H111 L1T . . . C 3 -20.32 -24.856 -7.762 1 27.12 ? H111 L1T 301 A 1 HETATM 23 H H121 L1T . . . C 3 -20.193 -22.714 -6.51 1 28 ? H121 L1T 301 A 1 HETATM 24 H H31 L1T . . . C 3 -19.191 -18.084 -4.994 1 25.58 ? H31 L1T 301 A 1 HETATM 25 H H91 L1T . . . C 3 -20.011 -22.749 -11.236 1 24.09 ? H91 L1T 301 A 1 HETATM 26 H H1 L1T . . . C 3 -19.847 -15.77 -5.36 1 23.51 ? H1 L1T 301 A 1 HETATM 27 H H14 L1T . . . C 3 -21.563 -15.218 -8.092 1 20.47 ? H14 L1T 301 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 27 #