data_6S9T # _model_server_result.job_id hU_2hxh4Y3Oxgh1qniINKw _model_server_result.datetime_utc '2025-01-05 18:48:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6s9t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 6S9T # _exptl.entry_id 6S9T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6S9T _cell.length_a 70.217 _cell.length_b 70.217 _cell.length_c 122.257 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S9T _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 50 A ALA 66 1_555 A N MSE 51 A MSE 67 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.336 ? covale ? covale2 A C ALA 50 A ALA 66 1_555 A N MSE 51 A MSE 67 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.339 ? covale ? covale3 A C MSE 51 A MSE 67 1_555 A N LEU 52 A LEU 68 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C MSE 51 A MSE 67 1_555 A N LEU 52 A LEU 68 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 A C THR 111 A THR 127 1_555 A N MSE 112 A MSE 128 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 112 A MSE 128 1_555 A N VAL 113 A VAL 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 A C PRO 119 A PRO 135 1_555 A N MSE 120 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale8 A C MSE 120 A MSE 136 1_555 A N PHE 121 A PHE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale9 A C PHE 134 A PHE 150 1_555 A N MSE 135 A MSE 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale10 A C MSE 135 A MSE 151 1_555 A N PHE 136 A PHE 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale11 A C ASP 138 A ASP 154 1_555 A N MSE 139 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale12 A C MSE 139 A MSE 155 1_555 A N MSE 140 A MSE 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale13 A C MSE 140 A MSE 156 1_555 A N ARG 141 A ARG 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale14 A C ALA 162 A ALA 178 1_555 A N MSE 163 A MSE 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale15 A C MSE 163 A MSE 179 1_555 A N HIS 164 A HIS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale16 A C GLN 169 A GLN 185 1_555 A N MSE 170 A MSE 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale17 A C MSE 170 A MSE 186 1_555 A N LEU 171 A LEU 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 256 n n O1 HO1 PG4 sing 257 n n C1 C2 PG4 sing 258 n n C1 H11 PG4 sing 259 n n C1 H12 PG4 sing 260 n n C2 O2 PG4 sing 261 n n C2 H21 PG4 sing 262 n n C2 H22 PG4 sing 263 n n O2 C3 PG4 sing 264 n n C3 C4 PG4 sing 265 n n C3 H31 PG4 sing 266 n n C3 H32 PG4 sing 267 n n C4 O3 PG4 sing 268 n n C4 H41 PG4 sing 269 n n C4 H42 PG4 sing 270 n n O3 C5 PG4 sing 271 n n C5 C6 PG4 sing 272 n n C5 H51 PG4 sing 273 n n C5 H52 PG4 sing 274 n n C6 O4 PG4 sing 275 n n C6 H61 PG4 sing 276 n n C6 H62 PG4 sing 277 n n O4 C7 PG4 sing 278 n n C7 C8 PG4 sing 279 n n C7 H71 PG4 sing 280 n n C7 H72 PG4 sing 281 n n C8 O5 PG4 sing 282 n n C8 H81 PG4 sing 283 n n C8 H82 PG4 sing 284 n n O5 HO5 PG4 sing 285 n n # _atom_sites.entry_id 6S9T _atom_sites.fract_transf_matrix[1][1] 0.014242 _atom_sites.fract_transf_matrix[1][2] 0.008222 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PG4 A 1 301 1 PG4 PG4 . D 3 PG4 A 1 302 2 PG4 PG4 . E 4 HOH A 1 401 15 HOH HOH . E 4 HOH A 2 402 20 HOH HOH . E 4 HOH A 3 403 16 HOH HOH . E 4 HOH A 4 404 17 HOH HOH . E 4 HOH A 5 405 6 HOH HOH . E 4 HOH A 6 406 2 HOH HOH . E 4 HOH A 7 407 10 HOH HOH . E 4 HOH A 8 408 9 HOH HOH . E 4 HOH A 9 409 3 HOH HOH . E 4 HOH A 10 410 27 HOH HOH . E 4 HOH A 11 411 23 HOH HOH . E 4 HOH A 12 412 8 HOH HOH . E 4 HOH A 13 413 19 HOH HOH . E 4 HOH A 14 414 1 HOH HOH . E 4 HOH A 15 415 26 HOH HOH . F 4 HOH D 1 401 14 HOH HOH . F 4 HOH D 2 402 25 HOH HOH . F 4 HOH D 3 403 5 HOH HOH . F 4 HOH D 4 404 28 HOH HOH . F 4 HOH D 5 405 12 HOH HOH . F 4 HOH D 6 406 4 HOH HOH . F 4 HOH D 7 407 21 HOH HOH . F 4 HOH D 8 408 18 HOH HOH . F 4 HOH D 9 409 13 HOH HOH . F 4 HOH D 10 410 7 HOH HOH . F 4 HOH D 11 411 11 HOH HOH . F 4 HOH D 12 412 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . D 3 26.254 33.594 18.711 1 54.64 ? O1 PG4 302 A 1 HETATM 2 C C1 PG4 . . . D 3 27.25 33.847 19.697 1 72.87 ? C1 PG4 302 A 1 HETATM 3 C C2 PG4 . . . D 3 26.836 34.85 20.737 1 76.21 ? C2 PG4 302 A 1 HETATM 4 O O2 PG4 . . . D 3 27.873 35.01 21.704 1 82.99 ? O2 PG4 302 A 1 HETATM 5 C C3 PG4 . . . D 3 28.054 36.353 22.144 1 87.05 ? C3 PG4 302 A 1 HETATM 6 C C4 PG4 . . . D 3 29.45 36.534 22.635 1 91.84 ? C4 PG4 302 A 1 HETATM 7 O O3 PG4 . . . D 3 30.365 36.057 21.652 1 99.17 ? O3 PG4 302 A 1 HETATM 8 C C5 PG4 . . . D 3 31.722 36.13 22.08 1 102.75 ? C5 PG4 302 A 1 HETATM 9 C C6 PG4 . . . D 3 32.644 35.692 20.973 1 102.56 ? C6 PG4 302 A 1 HETATM 10 O O4 PG4 . . . D 3 32.875 34.287 21.033 1 99.3 ? O4 PG4 302 A 1 HETATM 11 C C7 PG4 . . . D 3 33.654 33.878 22.155 1 102.73 ? C7 PG4 302 A 1 HETATM 12 C C8 PG4 . . . D 3 34.347 32.581 21.853 1 101.96 ? C8 PG4 302 A 1 HETATM 13 O O5 PG4 . . . D 3 33.897 31.52 22.676 1 96.38 ? O5 PG4 302 A 1 # _model_server_stats.io_time_ms 36 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 415 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #