data_6SA4 # _model_server_result.job_id IsYnoDqQJVvadSOMF86ong _model_server_result.datetime_utc '2025-08-31 03:12:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sa4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6SA4 # _exptl.entry_id 6SA4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SA4 _cell.length_a 36.77 _cell.length_b 45.19 _cell.length_c 69.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 35 A CYS 111 1_555 A SG CYS 69 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 51 A CYS 127 1_555 A SG CYS 115 A CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 64 A CYS 140 1_555 A SG CYS 125 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 A SG CYS 95 A CYS 171 1_555 A SG CYS 105 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc1 A OD2 ASP 52 A ASP 128 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc2 A O SER 54 A SER 130 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc3 A OD2 ASP 59 A ASP 135 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 A O VAL 93 A VAL 169 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc5 B MG MG . A MG 301 1_555 H O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc6 B MG MG . A MG 301 1_555 H O HOH . A HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6SA4 _atom_sites.fract_transf_matrix[1][1] 0.027196 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 394 MG MG . C 3 CL A 1 302 395 CL CL . D 4 GOL A 1 303 1 GOL GOL . E 4 GOL A 1 304 4 GOL GOL . F 4 GOL A 1 305 5 GOL GOL . G 4 GOL A 1 306 6 GOL GOL . H 5 HOH A 1 401 65 HOH HOH . H 5 HOH A 2 402 43 HOH HOH . H 5 HOH A 3 403 64 HOH HOH . H 5 HOH A 4 404 60 HOH HOH . H 5 HOH A 5 405 80 HOH HOH . H 5 HOH A 6 406 100 HOH HOH . H 5 HOH A 7 407 70 HOH HOH . H 5 HOH A 8 408 78 HOH HOH . H 5 HOH A 9 409 68 HOH HOH . H 5 HOH A 10 410 36 HOH HOH . H 5 HOH A 11 411 50 HOH HOH . H 5 HOH A 12 412 63 HOH HOH . H 5 HOH A 13 413 55 HOH HOH . H 5 HOH A 14 414 8 HOH HOH . H 5 HOH A 15 415 27 HOH HOH . H 5 HOH A 16 416 90 HOH HOH . H 5 HOH A 17 417 17 HOH HOH . H 5 HOH A 18 418 25 HOH HOH . H 5 HOH A 19 419 71 HOH HOH . H 5 HOH A 20 420 79 HOH HOH . H 5 HOH A 21 421 11 HOH HOH . H 5 HOH A 22 422 22 HOH HOH . H 5 HOH A 23 423 2 HOH HOH . H 5 HOH A 24 424 98 HOH HOH . H 5 HOH A 25 425 31 HOH HOH . H 5 HOH A 26 426 20 HOH HOH . H 5 HOH A 27 427 44 HOH HOH . H 5 HOH A 28 428 32 HOH HOH . H 5 HOH A 29 429 77 HOH HOH . H 5 HOH A 30 430 3 HOH HOH . H 5 HOH A 31 431 67 HOH HOH . H 5 HOH A 32 432 34 HOH HOH . H 5 HOH A 33 433 1 HOH HOH . H 5 HOH A 34 434 81 HOH HOH . H 5 HOH A 35 435 29 HOH HOH . H 5 HOH A 36 436 4 HOH HOH . H 5 HOH A 37 437 5 HOH HOH . H 5 HOH A 38 438 62 HOH HOH . H 5 HOH A 39 439 10 HOH HOH . H 5 HOH A 40 440 58 HOH HOH . H 5 HOH A 41 441 30 HOH HOH . H 5 HOH A 42 442 9 HOH HOH . H 5 HOH A 43 443 26 HOH HOH . H 5 HOH A 44 444 97 HOH HOH . H 5 HOH A 45 445 84 HOH HOH . H 5 HOH A 46 446 33 HOH HOH . H 5 HOH A 47 447 61 HOH HOH . H 5 HOH A 48 448 37 HOH HOH . H 5 HOH A 49 449 40 HOH HOH . H 5 HOH A 50 450 7 HOH HOH . H 5 HOH A 51 451 101 HOH HOH . H 5 HOH A 52 452 49 HOH HOH . H 5 HOH A 53 453 21 HOH HOH . H 5 HOH A 54 454 13 HOH HOH . H 5 HOH A 55 455 47 HOH HOH . H 5 HOH A 56 456 82 HOH HOH . H 5 HOH A 57 457 87 HOH HOH . H 5 HOH A 58 458 69 HOH HOH . H 5 HOH A 59 459 6 HOH HOH . H 5 HOH A 60 460 19 HOH HOH . H 5 HOH A 61 461 46 HOH HOH . H 5 HOH A 62 462 23 HOH HOH . H 5 HOH A 63 463 14 HOH HOH . H 5 HOH A 64 464 92 HOH HOH . H 5 HOH A 65 465 12 HOH HOH . H 5 HOH A 66 466 76 HOH HOH . H 5 HOH A 67 467 28 HOH HOH . H 5 HOH A 68 468 83 HOH HOH . H 5 HOH A 69 469 88 HOH HOH . H 5 HOH A 70 470 24 HOH HOH . H 5 HOH A 71 471 57 HOH HOH . H 5 HOH A 72 472 48 HOH HOH . H 5 HOH A 73 473 89 HOH HOH . H 5 HOH A 74 474 66 HOH HOH . H 5 HOH A 75 475 35 HOH HOH . H 5 HOH A 76 476 53 HOH HOH . H 5 HOH A 77 477 42 HOH HOH . H 5 HOH A 78 478 93 HOH HOH . H 5 HOH A 79 479 39 HOH HOH . H 5 HOH A 80 480 45 HOH HOH . H 5 HOH A 81 481 75 HOH HOH . H 5 HOH A 82 482 91 HOH HOH . H 5 HOH A 83 483 103 HOH HOH . H 5 HOH A 84 484 96 HOH HOH . H 5 HOH A 85 485 102 HOH HOH . H 5 HOH A 86 486 18 HOH HOH . H 5 HOH A 87 487 15 HOH HOH . H 5 HOH A 88 488 38 HOH HOH . H 5 HOH A 89 489 73 HOH HOH . H 5 HOH A 90 490 52 HOH HOH . H 5 HOH A 91 491 86 HOH HOH . H 5 HOH A 92 492 72 HOH HOH . H 5 HOH A 93 493 85 HOH HOH . H 5 HOH A 94 494 95 HOH HOH . H 5 HOH A 95 495 99 HOH HOH . H 5 HOH A 96 496 74 HOH HOH . H 5 HOH A 97 497 94 HOH HOH . H 5 HOH A 98 498 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 16.52 -8.493 -26.981 1 57.86 ? C1 GOL 304 A 1 HETATM 2 O O1 GOL . . . E 4 15.24 -8.855 -26.542 1 51 ? O1 GOL 304 A 1 HETATM 3 C C2 GOL . . . E 4 16.594 -6.947 -26.887 1 61.92 ? C2 GOL 304 A 1 HETATM 4 O O2 GOL . . . E 4 15.866 -6.32 -27.901 1 67.41 ? O2 GOL 304 A 1 HETATM 5 C C3 GOL . . . E 4 18.107 -6.614 -26.941 1 62.07 ? C3 GOL 304 A 1 HETATM 6 O O3 GOL . . . E 4 18.572 -6.652 -25.623 1 55.14 ? O3 GOL 304 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 670 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #