data_6SAC # _model_server_result.job_id X8mszLecsfiklDUsIw8w7g _model_server_result.datetime_utc '2024-10-20 07:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sac # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 6SAC # _exptl.entry_id 6SAC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 125.172 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1,3-dimethyl-1H-pyrazol-5-yl)methanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.823 _cell.angle_gamma 90 _cell.entry_id 6SAC _cell.length_a 42.374 _cell.length_b 41.286 _cell.length_c 72.281 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CA GLY 1 A GLY -4 1_555 J N 47J . A 47J 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? metalc ? metalc1 A OE1 GLN 58 A GLN 53 1_555 C NA NA . A NA 302 2_455 ? ? ? ? B ? ? ? ? ? ? ? 2.225 ? metalc ? metalc2 A O PRO 88 A PRO 83 1_555 B NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A NE2 HIS 99 A HIS 94 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc4 A NE2 HIS 101 A HIS 96 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc5 A ND1 HIS 124 A HIS 119 1_555 D ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc6 A O VAL 139 A VAL 135 1_555 E HG HG . A HG 304 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.242 ? metalc ? metalc7 A O GLN 141 A GLN 137 1_555 G HG BE7 . A BE7 306 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.879 ? metalc ? metalc8 A O ASP 166 A ASP 162 1_555 C NA NA . A NA 302 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.372 ? metalc ? metalc9 A OD1 ASP 169 A ASP 165 1_555 C NA NA . A NA 302 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.397 ? metalc ? metalc10 A SG CYS 210 A CYS 206 1_555 E HG HG . A HG 304 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.573 ? metalc ? metalc11 A SG CYS 210 A CYS 206 1_555 G HG BE7 . A BE7 306 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.394 ? metalc ? metalc12 B NA NA . A NA 301 1_555 H O2 PG4 . A PG4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc13 B NA NA . A NA 301 1_555 H O1 PG4 . A PG4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc14 B NA NA . A NA 301 1_555 H O3 PG4 . A PG4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc15 B NA NA . A NA 301 1_555 H O4 PG4 . A PG4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc16 B NA NA . A NA 301 1_555 H O5 PG4 . A PG4 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc17 B NA NA . A NA 301 1_555 K O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc18 C NA NA . A NA 302 1_555 K O HOH . A HOH 424 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.474 ? metalc ? metalc19 C NA NA . A NA 302 1_555 K O HOH . A HOH 501 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.272 ? metalc ? metalc20 C NA NA . A NA 302 1_555 K O HOH . A HOH 556 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.633 ? metalc ? metalc21 D ZN ZN . A ZN 303 1_555 K O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.9 ? # _chem_comp.formula 'C6 H11 N3' _chem_comp.formula_weight 125.172 _chem_comp.id 47J _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1,3-dimethyl-1H-pyrazol-5-yl)methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C4 47J sing 1 n n C C1 47J sing 2 n n C2 C1 47J sing 3 n y C2 C3 47J doub 4 n y C1 N2 47J doub 5 n y C3 C4 47J sing 6 n n C3 N1 47J sing 7 n y N2 N1 47J sing 8 n y N1 C5 47J sing 9 n n C4 H1 47J sing 10 n n C4 H2 47J sing 11 n n C5 H3 47J sing 12 n n C5 H4 47J sing 13 n n C5 H5 47J sing 14 n n C H6 47J sing 15 n n C H7 47J sing 16 n n C H8 47J sing 17 n n C2 H9 47J sing 18 n n N H10 47J sing 19 n n N H11 47J sing 20 n n # _atom_sites.entry_id 6SAC _atom_sites.fract_transf_matrix[1][1] 0.023599 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006245 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014311 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 301 1 NA NA . C 2 NA A 1 302 2 NA NA . D 3 ZN A 1 303 1 ZN ZN . E 4 HG A 1 304 1 HG HG . F 5 DMS A 1 305 1 DMS DMS . G 6 BE7 A 1 306 1 BE7 BE7 . H 7 PG4 A 1 307 1 PG4 PG4 . I 7 PG4 A 1 308 2 PG4 PG4 . J 8 47J A 1 309 1 47J 47J . K 9 HOH A 1 401 190 HOH HOH . K 9 HOH A 2 402 12 HOH HOH . K 9 HOH A 3 403 50 HOH HOH . K 9 HOH A 4 404 11 HOH HOH . K 9 HOH A 5 405 56 HOH HOH . K 9 HOH A 6 406 16 HOH HOH . K 9 HOH A 7 407 167 HOH HOH . K 9 HOH A 8 408 62 HOH HOH . K 9 HOH A 9 409 63 HOH HOH . K 9 HOH A 10 410 206 HOH HOH . K 9 HOH A 11 411 183 HOH HOH . K 9 HOH A 12 412 92 HOH HOH . K 9 HOH A 13 413 60 HOH HOH . K 9 HOH A 14 414 65 HOH HOH . K 9 HOH A 15 415 201 HOH HOH . K 9 HOH A 16 416 55 HOH HOH . K 9 HOH A 17 417 18 HOH HOH . K 9 HOH A 18 418 118 HOH HOH . K 9 HOH A 19 419 51 HOH HOH . K 9 HOH A 20 420 194 HOH HOH . K 9 HOH A 21 421 174 HOH HOH . K 9 HOH A 22 422 42 HOH HOH . K 9 HOH A 23 423 5 HOH HOH . K 9 HOH A 24 424 179 HOH HOH . K 9 HOH A 25 425 106 HOH HOH . K 9 HOH A 26 426 88 HOH HOH . K 9 HOH A 27 427 40 HOH HOH . K 9 HOH A 28 428 196 HOH HOH . K 9 HOH A 29 429 68 HOH HOH . K 9 HOH A 30 430 185 HOH HOH . K 9 HOH A 31 431 34 HOH HOH . K 9 HOH A 32 432 164 HOH HOH . K 9 HOH A 33 433 199 HOH HOH . K 9 HOH A 34 434 43 HOH HOH . K 9 HOH A 35 435 90 HOH HOH . K 9 HOH A 36 436 4 HOH HOH . K 9 HOH A 37 437 33 HOH HOH . K 9 HOH A 38 438 177 HOH HOH . K 9 HOH A 39 439 139 HOH HOH . K 9 HOH A 40 440 132 HOH HOH . K 9 HOH A 41 441 24 HOH HOH . K 9 HOH A 42 442 117 HOH HOH . K 9 HOH A 43 443 30 HOH HOH . K 9 HOH A 44 444 32 HOH HOH . K 9 HOH A 45 445 64 HOH HOH . K 9 HOH A 46 446 163 HOH HOH . K 9 HOH A 47 447 78 HOH HOH . K 9 HOH A 48 448 20 HOH HOH . K 9 HOH A 49 449 98 HOH HOH . K 9 HOH A 50 450 96 HOH HOH . K 9 HOH A 51 451 112 HOH HOH . K 9 HOH A 52 452 128 HOH HOH . K 9 HOH A 53 453 108 HOH HOH . K 9 HOH A 54 454 210 HOH HOH . K 9 HOH A 55 455 74 HOH HOH . K 9 HOH A 56 456 27 HOH HOH . K 9 HOH A 57 457 58 HOH HOH . K 9 HOH A 58 458 37 HOH HOH . K 9 HOH A 59 459 22 HOH HOH . K 9 HOH A 60 460 89 HOH HOH . K 9 HOH A 61 461 10 HOH HOH . K 9 HOH A 62 462 53 HOH HOH . K 9 HOH A 63 463 29 HOH HOH . K 9 HOH A 64 464 17 HOH HOH . K 9 HOH A 65 465 52 HOH HOH . K 9 HOH A 66 466 208 HOH HOH . K 9 HOH A 67 467 135 HOH HOH . K 9 HOH A 68 468 142 HOH HOH . K 9 HOH A 69 469 172 HOH HOH . K 9 HOH A 70 470 159 HOH HOH . K 9 HOH A 71 471 59 HOH HOH . K 9 HOH A 72 472 87 HOH HOH . K 9 HOH A 73 473 186 HOH HOH . K 9 HOH A 74 474 8 HOH HOH . K 9 HOH A 75 475 205 HOH HOH . K 9 HOH A 76 476 72 HOH HOH . K 9 HOH A 77 477 91 HOH HOH . K 9 HOH A 78 478 15 HOH HOH . K 9 HOH A 79 479 101 HOH HOH . K 9 HOH A 80 480 75 HOH HOH . K 9 HOH A 81 481 14 HOH HOH . K 9 HOH A 82 482 105 HOH HOH . K 9 HOH A 83 483 25 HOH HOH . K 9 HOH A 84 484 31 HOH HOH . K 9 HOH A 85 485 109 HOH HOH . K 9 HOH A 86 486 120 HOH HOH . K 9 HOH A 87 487 21 HOH HOH . K 9 HOH A 88 488 1 HOH HOH . K 9 HOH A 89 489 129 HOH HOH . K 9 HOH A 90 490 189 HOH HOH . K 9 HOH A 91 491 83 HOH HOH . K 9 HOH A 92 492 207 HOH HOH . K 9 HOH A 93 493 23 HOH HOH . K 9 HOH A 94 494 85 HOH HOH . K 9 HOH A 95 495 122 HOH HOH . K 9 HOH A 96 496 36 HOH HOH . K 9 HOH A 97 497 73 HOH HOH . K 9 HOH A 98 498 110 HOH HOH . K 9 HOH A 99 499 171 HOH HOH . K 9 HOH A 100 500 146 HOH HOH . K 9 HOH A 101 501 180 HOH HOH . K 9 HOH A 102 502 2 HOH HOH . K 9 HOH A 103 503 191 HOH HOH . K 9 HOH A 104 504 115 HOH HOH . K 9 HOH A 105 505 147 HOH HOH . K 9 HOH A 106 506 84 HOH HOH . K 9 HOH A 107 507 54 HOH HOH . K 9 HOH A 108 508 6 HOH HOH . K 9 HOH A 109 509 150 HOH HOH . K 9 HOH A 110 510 49 HOH HOH . K 9 HOH A 111 511 138 HOH HOH . K 9 HOH A 112 512 35 HOH HOH . K 9 HOH A 113 513 93 HOH HOH . K 9 HOH A 114 514 152 HOH HOH . K 9 HOH A 115 515 41 HOH HOH . K 9 HOH A 116 516 26 HOH HOH . K 9 HOH A 117 517 184 HOH HOH . K 9 HOH A 118 518 111 HOH HOH . K 9 HOH A 119 519 104 HOH HOH . K 9 HOH A 120 520 94 HOH HOH . K 9 HOH A 121 521 71 HOH HOH . K 9 HOH A 122 522 161 HOH HOH . K 9 HOH A 123 523 67 HOH HOH . K 9 HOH A 124 524 136 HOH HOH . K 9 HOH A 125 525 137 HOH HOH . K 9 HOH A 126 526 116 HOH HOH . K 9 HOH A 127 527 79 HOH HOH . K 9 HOH A 128 528 46 HOH HOH . K 9 HOH A 129 529 140 HOH HOH . K 9 HOH A 130 530 38 HOH HOH . K 9 HOH A 131 531 102 HOH HOH . K 9 HOH A 132 532 133 HOH HOH . K 9 HOH A 133 533 119 HOH HOH . K 9 HOH A 134 534 126 HOH HOH . K 9 HOH A 135 535 61 HOH HOH . K 9 HOH A 136 536 57 HOH HOH . K 9 HOH A 137 537 168 HOH HOH . K 9 HOH A 138 538 145 HOH HOH . K 9 HOH A 139 539 121 HOH HOH . K 9 HOH A 140 540 66 HOH HOH . K 9 HOH A 141 541 39 HOH HOH . K 9 HOH A 142 542 76 HOH HOH . K 9 HOH A 143 543 28 HOH HOH . K 9 HOH A 144 544 134 HOH HOH . K 9 HOH A 145 545 200 HOH HOH . K 9 HOH A 146 546 69 HOH HOH . K 9 HOH A 147 547 13 HOH HOH . K 9 HOH A 148 548 19 HOH HOH . K 9 HOH A 149 549 123 HOH HOH . K 9 HOH A 150 550 211 HOH HOH . K 9 HOH A 151 551 7 HOH HOH . K 9 HOH A 152 552 48 HOH HOH . K 9 HOH A 153 553 158 HOH HOH . K 9 HOH A 154 554 82 HOH HOH . K 9 HOH A 155 555 160 HOH HOH . K 9 HOH A 156 556 181 HOH HOH . K 9 HOH A 157 557 113 HOH HOH . K 9 HOH A 158 558 149 HOH HOH . K 9 HOH A 159 559 125 HOH HOH . K 9 HOH A 160 560 45 HOH HOH . K 9 HOH A 161 561 3 HOH HOH . K 9 HOH A 162 562 9 HOH HOH . K 9 HOH A 163 563 148 HOH HOH . K 9 HOH A 164 564 182 HOH HOH . K 9 HOH A 165 565 195 HOH HOH . K 9 HOH A 166 566 212 HOH HOH . K 9 HOH A 167 567 103 HOH HOH . K 9 HOH A 168 568 188 HOH HOH . K 9 HOH A 169 569 162 HOH HOH . K 9 HOH A 170 570 44 HOH HOH . K 9 HOH A 171 571 203 HOH HOH . K 9 HOH A 172 572 130 HOH HOH . K 9 HOH A 173 573 209 HOH HOH . K 9 HOH A 174 574 95 HOH HOH . K 9 HOH A 175 575 77 HOH HOH . K 9 HOH A 176 576 86 HOH HOH . K 9 HOH A 177 577 124 HOH HOH . K 9 HOH A 178 578 204 HOH HOH . K 9 HOH A 179 579 198 HOH HOH . K 9 HOH A 180 580 175 HOH HOH . K 9 HOH A 181 581 178 HOH HOH . K 9 HOH A 182 582 169 HOH HOH . K 9 HOH A 183 583 143 HOH HOH . K 9 HOH A 184 584 81 HOH HOH . K 9 HOH A 185 585 154 HOH HOH . K 9 HOH A 186 586 187 HOH HOH . K 9 HOH A 187 587 80 HOH HOH . K 9 HOH A 188 588 141 HOH HOH . K 9 HOH A 189 589 99 HOH HOH . K 9 HOH A 190 590 107 HOH HOH . K 9 HOH A 191 591 151 HOH HOH . K 9 HOH A 192 592 127 HOH HOH . K 9 HOH A 193 593 192 HOH HOH . K 9 HOH A 194 594 144 HOH HOH . K 9 HOH A 195 595 176 HOH HOH . K 9 HOH A 196 596 100 HOH HOH . K 9 HOH A 197 597 153 HOH HOH . K 9 HOH A 198 598 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 47J . . . J 8 15.215 -5.079 -3.203 0.81 29.42 ? C4 47J 309 A 1 HETATM 2 C C5 47J . . . J 8 17.775 -3.441 -3.868 0.81 29.57 ? C5 47J 309 A 1 HETATM 3 N N1 47J . . . J 8 17.698 -4.666 -3.079 0.81 29.09 ? N1 47J 309 A 1 HETATM 4 N N2 47J . . . J 8 18.841 -5.188 -2.545 0.81 28.76 ? N2 47J 309 A 1 HETATM 5 C C1 47J . . . J 8 18.444 -6.27 -1.89 0.81 28.47 ? C1 47J 309 A 1 HETATM 6 C C 47J . . . J 8 19.434 -7.104 -1.138 0.81 28.33 ? C 47J 309 A 1 HETATM 7 C C3 47J . . . J 8 16.611 -5.405 -2.769 0.81 28.93 ? C3 47J 309 A 1 HETATM 8 C C2 47J . . . J 8 17.057 -6.448 -2.004 0.81 28.45 ? C2 47J 309 A 1 HETATM 9 N N 47J . . . J 8 14.264 -6.057 -2.654 0.81 29.69 ? N 47J 309 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 9 #