data_6SAF # _model_server_result.job_id I6l26fiiv2xy_UxLhFIyYQ _model_server_result.datetime_utc '2024-12-05 20:10:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6saf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6SAF # _exptl.entry_id 6SAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 690.865 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1~{R})-3-(3,4-dimethoxyphenyl)-1-[3-(2-morpholin-4-ylethoxy)phenyl]propyl] (2~{S})-1-[[(1~{R},4~{a}~{R},8~{a}~{R})-4-oxidanylidene-2,3,4~{a},5,6,7,8,8~{a}-octahydro-1~{H}-naphthalen-1-yl]carbonyl]piperidine-2-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SAF _cell.length_a 42.555 _cell.length_b 50.334 _cell.length_c 62.776 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H54 N2 O8' _chem_comp.formula_weight 690.865 _chem_comp.id L2Q _chem_comp.mon_nstd_flag . _chem_comp.name '[(1~{R})-3-(3,4-dimethoxyphenyl)-1-[3-(2-morpholin-4-ylethoxy)phenyl]propyl] (2~{S})-1-[[(1~{R},4~{a}~{R},8~{a}~{R})-4-oxidanylidene-2,3,4~{a},5,6,7,8,8~{a}-octahydro-1~{H}-naphthalen-1-yl]carbonyl]piperidine-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAQ CAR L2Q sing 173 n n CAQ CAP L2Q sing 174 n n CB CAC L2Q sing 175 n n CB CA L2Q sing 176 n n CAR CAN L2Q sing 177 n n CAP CAO L2Q sing 178 n n CAC CAD L2Q sing 179 n n CAD CAE L2Q sing 180 n n CA N L2Q sing 181 n n CA C L2Q sing 182 n n OAH CAG L2Q doub 183 n n N CAG L2Q sing 184 n n N CAE L2Q sing 185 n n CAG CAI L2Q sing 186 n n CAN CAI L2Q sing 187 n n CAN CAM L2Q sing 188 n n O C L2Q doub 189 n n CAO CAM L2Q sing 190 n n C OAV L2Q sing 191 n n CAI CAJ L2Q sing 192 n n CAM CAL L2Q sing 193 n n CBJ OBI L2Q sing 194 n n CBH OBG L2Q sing 195 n n OBG CBD L2Q sing 196 n n OAV CAW L2Q sing 197 n n CAJ CAK L2Q sing 198 n n CAL CAK L2Q sing 199 n n CAL OAS L2Q doub 200 n n CBD CBE L2Q doub 201 n y CBD CBC L2Q sing 202 n y OBI CBE L2Q sing 203 n n CBE CBF L2Q sing 204 n y CBC CBB L2Q doub 205 n y CAW CAY L2Q sing 206 n n CAW CAX L2Q sing 207 n n CBF CBA L2Q doub 208 n y CBB CBA L2Q sing 209 n y CAY CAZ L2Q sing 210 n n CBA CAZ L2Q sing 211 n n CAX CBK L2Q doub 212 n y CAX CBO L2Q sing 213 n y CBK CBL L2Q sing 214 n y CBO CBN L2Q doub 215 n y CBQ OBP L2Q sing 216 n n CBQ CBR L2Q sing 217 n n CBL OBP L2Q sing 218 n n CBL CBM L2Q doub 219 n y CBN CBM L2Q sing 220 n y CBX NBS L2Q sing 221 n n CBX CBW L2Q sing 222 n n NBS CBR L2Q sing 223 n n NBS CBT L2Q sing 224 n n CBW OBV L2Q sing 225 n n CBT CBU L2Q sing 226 n n OBV CBU L2Q sing 227 n n CAN H1 L2Q sing 228 n n CAR H2 L2Q sing 229 n n CAR H3 L2Q sing 230 n n CAQ H4 L2Q sing 231 n n CAQ H5 L2Q sing 232 n n CAP H6 L2Q sing 233 n n CAP H7 L2Q sing 234 n n CAO H8 L2Q sing 235 n n CAO H9 L2Q sing 236 n n CAM H10 L2Q sing 237 n n CAK H11 L2Q sing 238 n n CAK H12 L2Q sing 239 n n CAJ H13 L2Q sing 240 n n CAJ H14 L2Q sing 241 n n CAI H15 L2Q sing 242 n n CAE H16 L2Q sing 243 n n CAE H17 L2Q sing 244 n n CAD H18 L2Q sing 245 n n CAD H19 L2Q sing 246 n n CAC H20 L2Q sing 247 n n CAC H21 L2Q sing 248 n n CB H22 L2Q sing 249 n n CB H23 L2Q sing 250 n n CA H24 L2Q sing 251 n n CAW H25 L2Q sing 252 n n CAY H26 L2Q sing 253 n n CAY H27 L2Q sing 254 n n CAZ H28 L2Q sing 255 n n CAZ H29 L2Q sing 256 n n CBF H30 L2Q sing 257 n n CBB H31 L2Q sing 258 n n CBC H32 L2Q sing 259 n n CBH H33 L2Q sing 260 n n CBH H34 L2Q sing 261 n n CBH H35 L2Q sing 262 n n CBJ H36 L2Q sing 263 n n CBJ H37 L2Q sing 264 n n CBJ H38 L2Q sing 265 n n CBK H39 L2Q sing 266 n n CBO H40 L2Q sing 267 n n CBN H41 L2Q sing 268 n n CBM H42 L2Q sing 269 n n CBQ H43 L2Q sing 270 n n CBQ H44 L2Q sing 271 n n CBR H45 L2Q sing 272 n n CBR H46 L2Q sing 273 n n CBX H48 L2Q sing 274 n n CBX H49 L2Q sing 275 n n CBW H50 L2Q sing 276 n n CBW H51 L2Q sing 277 n n CBU H52 L2Q sing 278 n n CBU H53 L2Q sing 279 n n CBT H54 L2Q sing 280 n n CBT H55 L2Q sing 281 n n # _atom_sites.entry_id 6SAF _atom_sites.fract_transf_matrix[1][1] 0.023499 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019867 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01593 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 L2Q A 1 201 1 L2Q DRG . C 3 HOH A 1 301 24 HOH HOH . C 3 HOH A 2 302 60 HOH HOH . C 3 HOH A 3 303 45 HOH HOH . C 3 HOH A 4 304 15 HOH HOH . C 3 HOH A 5 305 7 HOH HOH . C 3 HOH A 6 306 13 HOH HOH . C 3 HOH A 7 307 1 HOH HOH . C 3 HOH A 8 308 5 HOH HOH . C 3 HOH A 9 309 29 HOH HOH . C 3 HOH A 10 310 33 HOH HOH . C 3 HOH A 11 311 19 HOH HOH . C 3 HOH A 12 312 66 HOH HOH . C 3 HOH A 13 313 10 HOH HOH . C 3 HOH A 14 314 78 HOH HOH . C 3 HOH A 15 315 73 HOH HOH . C 3 HOH A 16 316 61 HOH HOH . C 3 HOH A 17 317 9 HOH HOH . C 3 HOH A 18 318 17 HOH HOH . C 3 HOH A 19 319 50 HOH HOH . C 3 HOH A 20 320 12 HOH HOH . C 3 HOH A 21 321 8 HOH HOH . C 3 HOH A 22 322 30 HOH HOH . C 3 HOH A 23 323 76 HOH HOH . C 3 HOH A 24 324 21 HOH HOH . C 3 HOH A 25 325 69 HOH HOH . C 3 HOH A 26 326 54 HOH HOH . C 3 HOH A 27 327 23 HOH HOH . C 3 HOH A 28 328 2 HOH HOH . C 3 HOH A 29 329 72 HOH HOH . C 3 HOH A 30 330 41 HOH HOH . C 3 HOH A 31 331 6 HOH HOH . C 3 HOH A 32 332 37 HOH HOH . C 3 HOH A 33 333 18 HOH HOH . C 3 HOH A 34 334 4 HOH HOH . C 3 HOH A 35 335 27 HOH HOH . C 3 HOH A 36 336 14 HOH HOH . C 3 HOH A 37 337 34 HOH HOH . C 3 HOH A 38 338 39 HOH HOH . C 3 HOH A 39 339 42 HOH HOH . C 3 HOH A 40 340 53 HOH HOH . C 3 HOH A 41 341 11 HOH HOH . C 3 HOH A 42 342 25 HOH HOH . C 3 HOH A 43 343 67 HOH HOH . C 3 HOH A 44 344 62 HOH HOH . C 3 HOH A 45 345 55 HOH HOH . C 3 HOH A 46 346 59 HOH HOH . C 3 HOH A 47 347 44 HOH HOH . C 3 HOH A 48 348 3 HOH HOH . C 3 HOH A 49 349 36 HOH HOH . C 3 HOH A 50 350 31 HOH HOH . C 3 HOH A 51 351 48 HOH HOH . C 3 HOH A 52 352 35 HOH HOH . C 3 HOH A 53 353 46 HOH HOH . C 3 HOH A 54 354 71 HOH HOH . C 3 HOH A 55 355 58 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 52 HOH HOH . C 3 HOH A 58 358 51 HOH HOH . C 3 HOH A 59 359 75 HOH HOH . C 3 HOH A 60 360 43 HOH HOH . C 3 HOH A 61 361 47 HOH HOH . C 3 HOH A 62 362 49 HOH HOH . C 3 HOH A 63 363 40 HOH HOH . C 3 HOH A 64 364 20 HOH HOH . C 3 HOH A 65 365 70 HOH HOH . C 3 HOH A 66 366 16 HOH HOH . C 3 HOH A 67 367 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAN L2Q . . . B 2 9.877 -2.915 26.009 1 43.18 ? CAN L2Q 201 A 1 HETATM 2 C CAR L2Q . . . B 2 9.951 -3.09 24.492 1 40.69 ? CAR L2Q 201 A 1 HETATM 3 C CAQ L2Q . . . B 2 11.214 -3.831 24.05 1 42.18 ? CAQ L2Q 201 A 1 HETATM 4 C CAP L2Q . . . B 2 11.136 -5.241 24.583 1 43.69 ? CAP L2Q 201 A 1 HETATM 5 C CAO L2Q . . . B 2 11.104 -5.144 26.181 1 46.37 ? CAO L2Q 201 A 1 HETATM 6 C CAM L2Q . . . B 2 9.837 -4.311 26.654 1 45.51 ? CAM L2Q 201 A 1 HETATM 7 C CAL L2Q . . . B 2 9.687 -4.202 28.06 1 48.2 ? CAL L2Q 201 A 1 HETATM 8 O OAS L2Q . . . B 2 10.531 -4.689 28.804 1 54 ? OAS L2Q 201 A 1 HETATM 9 C CAK L2Q . . . B 2 8.582 -3.562 28.619 1 47.07 ? CAK L2Q 201 A 1 HETATM 10 C CAJ L2Q . . . B 2 8.545 -2.108 28.041 1 44.56 ? CAJ L2Q 201 A 1 HETATM 11 C CAI L2Q . . . B 2 8.626 -2.112 26.485 1 42.1 ? CAI L2Q 201 A 1 HETATM 12 C CAG L2Q . . . B 2 8.614 -0.621 25.964 1 40.81 ? CAG L2Q 201 A 1 HETATM 13 O OAH L2Q . . . B 2 9.697 -0.074 25.685 1 41.29 ? OAH L2Q 201 A 1 HETATM 14 N N L2Q . . . B 2 7.402 0.015 25.795 1 37.32 ? N L2Q 201 A 1 HETATM 15 C CAE L2Q . . . B 2 6.084 -0.542 26.167 1 37.06 ? CAE L2Q 201 A 1 HETATM 16 C CAD L2Q . . . B 2 5.099 -0.308 25.182 1 35.1 ? CAD L2Q 201 A 1 HETATM 17 C CAC L2Q . . . B 2 4.925 1.144 25.04 1 35.26 ? CAC L2Q 201 A 1 HETATM 18 C CB L2Q . . . B 2 6.17 1.706 24.428 1 35.52 ? CB L2Q 201 A 1 HETATM 19 C CA L2Q . . . B 2 7.394 1.425 25.326 1 38.44 ? CA L2Q 201 A 1 HETATM 20 C C L2Q . . . B 2 7.48 2.395 26.412 1 42.79 ? C L2Q 201 A 1 HETATM 21 O O L2Q . . . B 2 7.784 3.555 26.135 1 42.53 ? O L2Q 201 A 1 HETATM 22 O OAV L2Q . . . B 2 7.243 1.945 27.717 1 45.66 ? OAV L2Q 201 A 1 HETATM 23 C CAW L2Q . . . B 2 6.996 2.94 28.802 1 47.04 ? CAW L2Q 201 A 1 HETATM 24 C CAY L2Q . . . B 2 8.356 3.118 29.449 1 47.82 ? CAY L2Q 201 A 1 HETATM 25 C CAZ L2Q . . . B 2 8.317 4.385 30.28 1 49.74 ? CAZ L2Q 201 A 1 HETATM 26 C CBA L2Q . . . B 2 8.862 5.53 29.579 1 47.77 ? CBA L2Q 201 A 1 HETATM 27 C CBF L2Q . . . B 2 10.219 5.603 29.251 1 47.67 ? CBF L2Q 201 A 1 HETATM 28 C CBB L2Q . . . B 2 8.043 6.614 29.255 1 45.71 ? CBB L2Q 201 A 1 HETATM 29 C CBC L2Q . . . B 2 8.543 7.733 28.597 1 45.28 ? CBC L2Q 201 A 1 HETATM 30 C CBD L2Q . . . B 2 9.905 7.8 28.257 1 46.94 ? CBD L2Q 201 A 1 HETATM 31 O OBG L2Q . . . B 2 10.456 8.876 27.613 1 47.87 ? OBG L2Q 201 A 1 HETATM 32 C CBH L2Q . . . B 2 9.673 10.098 27.546 1 47.66 ? CBH L2Q 201 A 1 HETATM 33 C CBE L2Q . . . B 2 10.748 6.705 28.589 1 48.01 ? CBE L2Q 201 A 1 HETATM 34 O OBI L2Q . . . B 2 12.106 6.66 28.321 1 49.89 ? OBI L2Q 201 A 1 HETATM 35 C CBJ L2Q . . . B 2 12.827 7.597 27.504 1 51.1 ? CBJ L2Q 201 A 1 HETATM 36 C CAX L2Q . . . B 2 5.922 2.454 29.61 1 48.38 ? CAX L2Q 201 A 1 HETATM 37 C CBK L2Q . . . B 2 4.717 3.159 29.714 1 49.73 ? CBK L2Q 201 A 1 HETATM 38 C CBO L2Q . . . B 2 6.015 1.209 30.233 1 50.16 ? CBO L2Q 201 A 1 HETATM 39 C CBN L2Q . . . B 2 4.971 0.671 30.974 1 52.34 ? CBN L2Q 201 A 1 HETATM 40 C CBM L2Q . . . B 2 3.788 1.384 31.086 1 54.25 ? CBM L2Q 201 A 1 HETATM 41 C CBL L2Q . . . B 2 3.654 2.636 30.455 1 53.57 ? CBL L2Q 201 A 1 HETATM 42 O OBP L2Q . . . B 2 2.441 3.248 30.627 1 58.79 ? OBP L2Q 201 A 1 HETATM 43 C CBQ L2Q . . . B 2 2.028 4.586 30.265 1 63.03 ? CBQ L2Q 201 A 1 HETATM 44 C CBR L2Q . . . B 2 1.406 5.088 31.565 1 69.2 ? CBR L2Q 201 A 1 HETATM 45 N NBS L2Q . . . B 2 0.443 6.177 31.313 1 71.81 ? NBS L2Q 201 A 1 HETATM 46 C CBX L2Q . . . B 2 -1.016 5.959 31.226 1 72.83 ? CBX L2Q 201 A 1 HETATM 47 C CBW L2Q . . . B 2 -1.732 5.406 32.453 1 79.01 ? CBW L2Q 201 A 1 HETATM 48 O OBV L2Q . . . B 2 -1.332 6.147 33.677 1 81.35 ? OBV L2Q 201 A 1 HETATM 49 C CBU L2Q . . . B 2 0.054 6.433 33.875 1 80.19 ? CBU L2Q 201 A 1 HETATM 50 C CBT L2Q . . . B 2 0.549 7.071 32.526 1 75.46 ? CBT L2Q 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 50 #