data_6SAK # _model_server_result.job_id 4ASG80TM8te02r9-JqVO1Q _model_server_result.datetime_utc '2024-11-04 22:11:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":404}' # _entry.id 6SAK # _exptl.entry_id 6SAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 65.132 _cell.angle_beta 85.976 _cell.angle_gamma 85.38 _cell.entry_id 6SAK _cell.length_a 54.645 _cell.length_b 62.912 _cell.length_c 72.017 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,H,I,J,K,L,T,V 1 1 B,D,M,N,O,P,Q,R,S,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6SAK _atom_sites.fract_transf_matrix[1][1] 0.0183 _atom_sites.fract_transf_matrix[1][2] -0.001479 _atom_sites.fract_transf_matrix[1][3] -0.000738 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015947 _atom_sites.fract_transf_matrix[2][3] -0.007322 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015317 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 401 401 GOL GOL . F 3 GOL A 1 402 501 GOL GOL . G 3 GOL A 1 403 601 GOL GOL . H 3 GOL A 1 404 701 GOL GOL . I 3 GOL A 1 405 801 GOL GOL . J 4 SO4 A 1 406 2 SO4 SO4 . K 4 SO4 A 1 407 5 SO4 SO4 . L 4 SO4 A 1 408 7 SO4 SO4 . M 3 GOL B 1 501 501 GOL GOL . N 3 GOL B 1 502 601 GOL GOL . O 3 GOL B 1 503 701 GOL GOL . P 3 GOL B 1 504 801 GOL GOL . Q 4 SO4 B 1 505 3 SO4 SO4 . R 4 SO4 B 1 506 4 SO4 SO4 . S 4 SO4 B 1 507 8 SO4 SO4 . T 5 HOH A 1 501 134 HOH HOH . T 5 HOH A 2 502 269 HOH HOH . T 5 HOH A 3 503 188 HOH HOH . T 5 HOH A 4 504 80 HOH HOH . T 5 HOH A 5 505 94 HOH HOH . T 5 HOH A 6 506 247 HOH HOH . T 5 HOH A 7 507 253 HOH HOH . T 5 HOH A 8 508 183 HOH HOH . T 5 HOH A 9 509 119 HOH HOH . T 5 HOH A 10 510 180 HOH HOH . T 5 HOH A 11 511 249 HOH HOH . T 5 HOH A 12 512 53 HOH HOH . T 5 HOH A 13 513 27 HOH HOH . T 5 HOH A 14 514 67 HOH HOH . T 5 HOH A 15 515 41 HOH HOH . T 5 HOH A 16 516 112 HOH HOH . T 5 HOH A 17 517 98 HOH HOH . T 5 HOH A 18 518 257 HOH HOH . T 5 HOH A 19 519 59 HOH HOH . T 5 HOH A 20 520 65 HOH HOH . T 5 HOH A 21 521 48 HOH HOH . T 5 HOH A 22 522 78 HOH HOH . T 5 HOH A 23 523 92 HOH HOH . T 5 HOH A 24 524 255 HOH HOH . T 5 HOH A 25 525 174 HOH HOH . T 5 HOH A 26 526 157 HOH HOH . T 5 HOH A 27 527 207 HOH HOH . T 5 HOH A 28 528 32 HOH HOH . T 5 HOH A 29 529 133 HOH HOH . T 5 HOH A 30 530 246 HOH HOH . T 5 HOH A 31 531 11 HOH HOH . T 5 HOH A 32 532 9 HOH HOH . T 5 HOH A 33 533 150 HOH HOH . T 5 HOH A 34 534 43 HOH HOH . T 5 HOH A 35 535 120 HOH HOH . T 5 HOH A 36 536 3 HOH HOH . T 5 HOH A 37 537 35 HOH HOH . T 5 HOH A 38 538 256 HOH HOH . T 5 HOH A 39 539 230 HOH HOH . T 5 HOH A 40 540 175 HOH HOH . T 5 HOH A 41 541 85 HOH HOH . T 5 HOH A 42 542 151 HOH HOH . T 5 HOH A 43 543 132 HOH HOH . T 5 HOH A 44 544 208 HOH HOH . T 5 HOH A 45 545 6 HOH HOH . T 5 HOH A 46 546 135 HOH HOH . T 5 HOH A 47 547 143 HOH HOH . T 5 HOH A 48 548 56 HOH HOH . T 5 HOH A 49 549 137 HOH HOH . T 5 HOH A 50 550 204 HOH HOH . T 5 HOH A 51 551 225 HOH HOH . T 5 HOH A 52 552 116 HOH HOH . T 5 HOH A 53 553 185 HOH HOH . T 5 HOH A 54 554 121 HOH HOH . T 5 HOH A 55 555 231 HOH HOH . T 5 HOH A 56 556 40 HOH HOH . T 5 HOH A 57 557 110 HOH HOH . T 5 HOH A 58 558 252 HOH HOH . T 5 HOH A 59 559 205 HOH HOH . T 5 HOH A 60 560 212 HOH HOH . T 5 HOH A 61 561 178 HOH HOH . T 5 HOH A 62 562 154 HOH HOH . T 5 HOH A 63 563 152 HOH HOH . T 5 HOH A 64 564 173 HOH HOH . T 5 HOH A 65 565 258 HOH HOH . T 5 HOH A 66 566 176 HOH HOH . T 5 HOH A 67 567 21 HOH HOH . T 5 HOH A 68 568 172 HOH HOH . T 5 HOH A 69 569 165 HOH HOH . T 5 HOH A 70 570 155 HOH HOH . T 5 HOH A 71 571 31 HOH HOH . T 5 HOH A 72 572 125 HOH HOH . T 5 HOH A 73 573 162 HOH HOH . T 5 HOH A 74 574 30 HOH HOH . T 5 HOH A 75 575 145 HOH HOH . T 5 HOH A 76 576 13 HOH HOH . T 5 HOH A 77 577 260 HOH HOH . T 5 HOH A 78 578 76 HOH HOH . T 5 HOH A 79 579 210 HOH HOH . T 5 HOH A 80 580 187 HOH HOH . T 5 HOH A 81 581 130 HOH HOH . T 5 HOH A 82 582 209 HOH HOH . T 5 HOH A 83 583 8 HOH HOH . T 5 HOH A 84 584 68 HOH HOH . T 5 HOH A 85 585 66 HOH HOH . T 5 HOH A 86 586 232 HOH HOH . T 5 HOH A 87 587 114 HOH HOH . T 5 HOH A 88 588 250 HOH HOH . T 5 HOH A 89 589 279 HOH HOH . T 5 HOH A 90 590 263 HOH HOH . T 5 HOH A 91 591 280 HOH HOH . T 5 HOH A 92 592 261 HOH HOH . T 5 HOH A 93 593 262 HOH HOH . T 5 HOH A 94 594 206 HOH HOH . T 5 HOH A 95 595 147 HOH HOH . T 5 HOH A 96 596 254 HOH HOH . T 5 HOH A 97 597 186 HOH HOH . T 5 HOH A 98 598 184 HOH HOH . T 5 HOH A 99 599 136 HOH HOH . T 5 HOH A 100 600 281 HOH HOH . T 5 HOH A 101 601 251 HOH HOH . T 5 HOH A 102 602 259 HOH HOH . T 5 HOH A 103 603 265 HOH HOH . T 5 HOH A 104 604 64 HOH HOH . T 5 HOH A 105 605 201 HOH HOH . T 5 HOH A 106 606 248 HOH HOH . U 5 HOH B 1 601 100 HOH HOH . U 5 HOH B 2 602 108 HOH HOH . U 5 HOH B 3 603 237 HOH HOH . U 5 HOH B 4 604 238 HOH HOH . U 5 HOH B 5 605 99 HOH HOH . U 5 HOH B 6 606 106 HOH HOH . U 5 HOH B 7 607 196 HOH HOH . U 5 HOH B 8 608 24 HOH HOH . U 5 HOH B 9 609 74 HOH HOH . U 5 HOH B 10 610 129 HOH HOH . U 5 HOH B 11 611 73 HOH HOH . U 5 HOH B 12 612 240 HOH HOH . U 5 HOH B 13 613 95 HOH HOH . U 5 HOH B 14 614 54 HOH HOH . U 5 HOH B 15 615 26 HOH HOH . U 5 HOH B 16 616 16 HOH HOH . U 5 HOH B 17 617 149 HOH HOH . U 5 HOH B 18 618 90 HOH HOH . U 5 HOH B 19 619 141 HOH HOH . U 5 HOH B 20 620 72 HOH HOH . U 5 HOH B 21 621 55 HOH HOH . U 5 HOH B 22 622 190 HOH HOH . U 5 HOH B 23 623 97 HOH HOH . U 5 HOH B 24 624 1 HOH HOH . U 5 HOH B 25 625 84 HOH HOH . U 5 HOH B 26 626 18 HOH HOH . U 5 HOH B 27 627 243 HOH HOH . U 5 HOH B 28 628 42 HOH HOH . U 5 HOH B 29 629 168 HOH HOH . U 5 HOH B 30 630 273 HOH HOH . U 5 HOH B 31 631 239 HOH HOH . U 5 HOH B 32 632 38 HOH HOH . U 5 HOH B 33 633 222 HOH HOH . U 5 HOH B 34 634 234 HOH HOH . U 5 HOH B 35 635 34 HOH HOH . U 5 HOH B 36 636 229 HOH HOH . U 5 HOH B 37 637 70 HOH HOH . U 5 HOH B 38 638 75 HOH HOH . U 5 HOH B 39 639 267 HOH HOH . U 5 HOH B 40 640 96 HOH HOH . U 5 HOH B 41 641 36 HOH HOH . U 5 HOH B 42 642 33 HOH HOH . U 5 HOH B 43 643 5 HOH HOH . U 5 HOH B 44 644 23 HOH HOH . U 5 HOH B 45 645 69 HOH HOH . U 5 HOH B 46 646 50 HOH HOH . U 5 HOH B 47 647 71 HOH HOH . U 5 HOH B 48 648 28 HOH HOH . U 5 HOH B 49 649 10 HOH HOH . U 5 HOH B 50 650 81 HOH HOH . U 5 HOH B 51 651 104 HOH HOH . U 5 HOH B 52 652 179 HOH HOH . U 5 HOH B 53 653 167 HOH HOH . U 5 HOH B 54 654 127 HOH HOH . U 5 HOH B 55 655 144 HOH HOH . U 5 HOH B 56 656 241 HOH HOH . U 5 HOH B 57 657 46 HOH HOH . U 5 HOH B 58 658 235 HOH HOH . U 5 HOH B 59 659 115 HOH HOH . U 5 HOH B 60 660 93 HOH HOH . U 5 HOH B 61 661 194 HOH HOH . U 5 HOH B 62 662 160 HOH HOH . U 5 HOH B 63 663 105 HOH HOH . U 5 HOH B 64 664 197 HOH HOH . U 5 HOH B 65 665 200 HOH HOH . U 5 HOH B 66 666 148 HOH HOH . U 5 HOH B 67 667 47 HOH HOH . U 5 HOH B 68 668 245 HOH HOH . U 5 HOH B 69 669 216 HOH HOH . U 5 HOH B 70 670 4 HOH HOH . U 5 HOH B 71 671 266 HOH HOH . U 5 HOH B 72 672 109 HOH HOH . U 5 HOH B 73 673 37 HOH HOH . U 5 HOH B 74 674 17 HOH HOH . U 5 HOH B 75 675 211 HOH HOH . U 5 HOH B 76 676 128 HOH HOH . U 5 HOH B 77 677 156 HOH HOH . U 5 HOH B 78 678 25 HOH HOH . U 5 HOH B 79 679 77 HOH HOH . U 5 HOH B 80 680 117 HOH HOH . U 5 HOH B 81 681 29 HOH HOH . U 5 HOH B 82 682 159 HOH HOH . U 5 HOH B 83 683 20 HOH HOH . U 5 HOH B 84 684 163 HOH HOH . U 5 HOH B 85 685 2 HOH HOH . U 5 HOH B 86 686 282 HOH HOH . U 5 HOH B 87 687 52 HOH HOH . U 5 HOH B 88 688 58 HOH HOH . U 5 HOH B 89 689 195 HOH HOH . U 5 HOH B 90 690 79 HOH HOH . U 5 HOH B 91 691 101 HOH HOH . U 5 HOH B 92 692 169 HOH HOH . U 5 HOH B 93 693 271 HOH HOH . U 5 HOH B 94 694 242 HOH HOH . U 5 HOH B 95 695 283 HOH HOH . U 5 HOH B 96 696 223 HOH HOH . U 5 HOH B 97 697 236 HOH HOH . U 5 HOH B 98 698 221 HOH HOH . U 5 HOH B 99 699 217 HOH HOH . U 5 HOH B 100 700 272 HOH HOH . U 5 HOH B 101 701 214 HOH HOH . U 5 HOH B 102 702 199 HOH HOH . U 5 HOH B 103 703 270 HOH HOH . U 5 HOH B 104 704 122 HOH HOH . U 5 HOH B 105 705 215 HOH HOH . U 5 HOH B 106 706 268 HOH HOH . U 5 HOH B 107 707 244 HOH HOH . U 5 HOH B 108 708 218 HOH HOH . U 5 HOH B 109 709 191 HOH HOH . U 5 HOH B 110 710 124 HOH HOH . U 5 HOH B 111 711 62 HOH HOH . U 5 HOH B 112 712 193 HOH HOH . U 5 HOH B 113 713 111 HOH HOH . U 5 HOH B 114 714 198 HOH HOH . V 5 HOH C 1 201 224 HOH HOH . V 5 HOH C 2 202 113 HOH HOH . V 5 HOH C 3 203 275 HOH HOH . V 5 HOH C 4 204 57 HOH HOH . V 5 HOH C 5 205 22 HOH HOH . V 5 HOH C 6 206 83 HOH HOH . V 5 HOH C 7 207 146 HOH HOH . V 5 HOH C 8 208 39 HOH HOH . V 5 HOH C 9 209 284 HOH HOH . V 5 HOH C 10 210 61 HOH HOH . V 5 HOH C 11 211 49 HOH HOH . V 5 HOH C 12 212 202 HOH HOH . V 5 HOH C 13 213 166 HOH HOH . V 5 HOH C 14 214 274 HOH HOH . V 5 HOH C 15 215 264 HOH HOH . V 5 HOH C 16 216 177 HOH HOH . W 5 HOH D 1 201 139 HOH HOH . W 5 HOH D 2 202 278 HOH HOH . W 5 HOH D 3 203 86 HOH HOH . W 5 HOH D 4 204 15 HOH HOH . W 5 HOH D 5 205 19 HOH HOH . W 5 HOH D 6 206 219 HOH HOH . W 5 HOH D 7 207 12 HOH HOH . W 5 HOH D 8 208 102 HOH HOH . W 5 HOH D 9 209 44 HOH HOH . W 5 HOH D 10 210 63 HOH HOH . W 5 HOH D 11 211 158 HOH HOH . W 5 HOH D 12 212 91 HOH HOH . W 5 HOH D 13 213 89 HOH HOH . W 5 HOH D 14 214 213 HOH HOH . W 5 HOH D 15 215 45 HOH HOH . W 5 HOH D 16 216 7 HOH HOH . W 5 HOH D 17 217 87 HOH HOH . W 5 HOH D 18 218 227 HOH HOH . W 5 HOH D 19 219 164 HOH HOH . W 5 HOH D 20 220 277 HOH HOH . W 5 HOH D 21 221 103 HOH HOH . W 5 HOH D 22 222 107 HOH HOH . W 5 HOH D 23 223 131 HOH HOH . W 5 HOH D 24 224 276 HOH HOH . W 5 HOH D 25 225 233 HOH HOH . W 5 HOH D 26 226 140 HOH HOH . W 5 HOH D 27 227 226 HOH HOH . W 5 HOH D 28 228 286 HOH HOH . W 5 HOH D 29 229 118 HOH HOH . W 5 HOH D 30 230 228 HOH HOH . W 5 HOH D 31 231 161 HOH HOH . W 5 HOH D 32 232 285 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -44.558 109.252 -48.156 1 78.34 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . H 3 -45.003 109.339 -46.831 1 77.87 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . H 3 -45.779 108.878 -49.015 1 78.52 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . H 3 -46.641 109.946 -49.175 1 79.08 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . H 3 -45.179 108.39 -50.34 1 78.19 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . H 3 -46.159 108.581 -51.323 1 78.11 ? O3 GOL 404 A 1 HETATM 7 H H11 GOL . . . H 3 -44.181 110.085 -48.479 1 94.06 ? H11 GOL 404 A 1 HETATM 8 H H12 GOL . . . H 3 -43.865 108.583 -48.274 1 94.06 ? H12 GOL 404 A 1 HETATM 9 H HO1 GOL . . . H 3 -44.367 109.678 -46.378 1 93.5 ? HO1 GOL 404 A 1 HETATM 10 H H2 GOL . . . H 3 -46.306 108.179 -48.595 1 94.28 ? H2 GOL 404 A 1 HETATM 11 H HO2 GOL . . . H 3 -46.354 110.42 -49.818 1 94.95 ? HO2 GOL 404 A 1 HETATM 12 H H31 GOL . . . H 3 -44.908 107.464 -50.24 1 93.88 ? H31 GOL 404 A 1 HETATM 13 H H32 GOL . . . H 3 -44.36 108.88 -50.513 1 93.88 ? H32 GOL 404 A 1 HETATM 14 H HO3 GOL . . . H 3 -46.335 107.805 -51.642 1 93.79 ? HO3 GOL 404 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #