data_6SAM # _model_server_result.job_id 5CSkmnogcsG1EmoIs5nBKA _model_server_result.datetime_utc '2024-12-21 18:37:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":613}' # _entry.id 6SAM # _exptl.entry_id 6SAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SAM _cell.length_a 154.28 _cell.length_b 154.28 _cell.length_c 127.9 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 902 NAG 2 n B NAG 2 B 2 NAG A 903 NAG 2 n B FUC 3 B 3 FUC A 907 FUC 2 n C NAG 1 C 1 NAG A 908 NAG 2 n C NAG 2 C 2 NAG A 909 NAG 2 n C FUC 3 C 3 FUC A 910 FUC 2 n D NAG 1 D 1 NAG A 911 NAG 2 n D NAG 2 D 2 NAG A 912 NAG 2 n D FUC 3 D 3 FUC A 1002 FUC 3 n E NAG 1 E 1 NAG A 1003 NAG 3 n E FUC 2 E 2 FUC A 1004 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 J C1 NAG . A NAG 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 K C1 NAG . A NAG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale8 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale10 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale12 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale13 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 6SAM _atom_sites.fract_transf_matrix[1][1] 0.006482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 DMS A 1 601 601 DMS DMS . G 5 GOL A 1 602 801 GOL GOL . H 6 L3H A 1 603 901 L3H GNS . I 5 GOL A 1 613 1001 GOL GOL . J 7 NAG A 1 616 1005 NAG NAG . K 7 NAG A 1 617 1006 NAG NAG . L 8 SO4 A 1 618 1 SO4 SO4 . M 8 SO4 A 1 619 2 SO4 SO4 . N 9 HOH A 1 701 4 HOH HOH . N 9 HOH A 2 702 82 HOH HOH . N 9 HOH A 3 703 23 HOH HOH . N 9 HOH A 4 704 50 HOH HOH . N 9 HOH A 5 705 71 HOH HOH . N 9 HOH A 6 706 85 HOH HOH . N 9 HOH A 7 707 6 HOH HOH . N 9 HOH A 8 708 24 HOH HOH . N 9 HOH A 9 709 66 HOH HOH . N 9 HOH A 10 710 73 HOH HOH . N 9 HOH A 11 711 46 HOH HOH . N 9 HOH A 12 712 19 HOH HOH . N 9 HOH A 13 713 42 HOH HOH . N 9 HOH A 14 714 36 HOH HOH . N 9 HOH A 15 715 79 HOH HOH . N 9 HOH A 16 716 32 HOH HOH . N 9 HOH A 17 717 39 HOH HOH . N 9 HOH A 18 718 29 HOH HOH . N 9 HOH A 19 719 60 HOH HOH . N 9 HOH A 20 720 78 HOH HOH . N 9 HOH A 21 721 35 HOH HOH . N 9 HOH A 22 722 7 HOH HOH . N 9 HOH A 23 723 22 HOH HOH . N 9 HOH A 24 724 5 HOH HOH . N 9 HOH A 25 725 86 HOH HOH . N 9 HOH A 26 726 61 HOH HOH . N 9 HOH A 27 727 43 HOH HOH . N 9 HOH A 28 728 49 HOH HOH . N 9 HOH A 29 729 14 HOH HOH . N 9 HOH A 30 730 54 HOH HOH . N 9 HOH A 31 731 2 HOH HOH . N 9 HOH A 32 732 25 HOH HOH . N 9 HOH A 33 733 74 HOH HOH . N 9 HOH A 34 734 10 HOH HOH . N 9 HOH A 35 735 31 HOH HOH . N 9 HOH A 36 736 34 HOH HOH . N 9 HOH A 37 737 41 HOH HOH . N 9 HOH A 38 738 58 HOH HOH . N 9 HOH A 39 739 45 HOH HOH . N 9 HOH A 40 740 51 HOH HOH . N 9 HOH A 41 741 18 HOH HOH . N 9 HOH A 42 742 13 HOH HOH . N 9 HOH A 43 743 77 HOH HOH . N 9 HOH A 44 744 37 HOH HOH . N 9 HOH A 45 745 28 HOH HOH . N 9 HOH A 46 746 48 HOH HOH . N 9 HOH A 47 747 30 HOH HOH . N 9 HOH A 48 748 3 HOH HOH . N 9 HOH A 49 749 33 HOH HOH . N 9 HOH A 50 750 53 HOH HOH . N 9 HOH A 51 751 12 HOH HOH . N 9 HOH A 52 752 1 HOH HOH . N 9 HOH A 53 753 16 HOH HOH . N 9 HOH A 54 754 59 HOH HOH . N 9 HOH A 55 755 44 HOH HOH . N 9 HOH A 56 756 8 HOH HOH . N 9 HOH A 57 757 47 HOH HOH . N 9 HOH A 58 758 70 HOH HOH . N 9 HOH A 59 759 65 HOH HOH . N 9 HOH A 60 760 17 HOH HOH . N 9 HOH A 61 761 84 HOH HOH . N 9 HOH A 62 762 52 HOH HOH . N 9 HOH A 63 763 21 HOH HOH . N 9 HOH A 64 764 9 HOH HOH . N 9 HOH A 65 765 15 HOH HOH . N 9 HOH A 66 766 72 HOH HOH . N 9 HOH A 67 767 38 HOH HOH . N 9 HOH A 68 768 64 HOH HOH . N 9 HOH A 69 769 69 HOH HOH . N 9 HOH A 70 770 67 HOH HOH . N 9 HOH A 71 771 11 HOH HOH . N 9 HOH A 72 772 20 HOH HOH . N 9 HOH A 73 773 40 HOH HOH . N 9 HOH A 74 774 76 HOH HOH . N 9 HOH A 75 775 56 HOH HOH . N 9 HOH A 76 776 68 HOH HOH . N 9 HOH A 77 777 75 HOH HOH . N 9 HOH A 78 778 80 HOH HOH . N 9 HOH A 79 779 63 HOH HOH . N 9 HOH A 80 780 55 HOH HOH . N 9 HOH A 81 781 81 HOH HOH . N 9 HOH A 82 782 26 HOH HOH . N 9 HOH A 83 783 57 HOH HOH . N 9 HOH A 84 784 62 HOH HOH . N 9 HOH A 85 785 83 HOH HOH . N 9 HOH A 86 786 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 121.491 126.077 27.638 1 59.27 ? C1 GOL 613 A 1 HETATM 2 O O1 GOL . . . I 5 121.496 127.438 27.909 1 61.46 ? O1 GOL 613 A 1 HETATM 3 C C2 GOL . . . I 5 120.002 125.594 27.7 1 67.06 ? C2 GOL 613 A 1 HETATM 4 O O2 GOL . . . I 5 119.157 126.459 28.424 1 70.41 ? O2 GOL 613 A 1 HETATM 5 C C3 GOL . . . I 5 119.58 125.403 26.219 1 67.09 ? C3 GOL 613 A 1 HETATM 6 O O3 GOL . . . I 5 120.197 124.206 25.796 1 70.69 ? O3 GOL 613 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #