data_6SAW
#
_model_server_result.job_id            ArKD1V0C297-cVy9OwZXPw 
_model_server_result.datetime_utc      '2024-11-07 19:23:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6saw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":401}' 
#
_entry.id    6SAW 
#
_exptl.entry_id    6SAW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              585.67 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6SAW 
_cell.length_a            344.65 
_cell.length_b            344.65 
_cell.length_c            92.44 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SAW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J,Y 1 1 
C,M,N,AA 1 2 
B,K,L,Z 2 1 
E,Q,R,CA 2 2 
D,G,O,P,U,V,BA,EA 3 1 
F,H,S,T,W,X,DA,FA 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -92.44 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 17 1_555 I CBA LBV . A LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
covale ? covale2 B SG CYS 19 B CYS 17 1_555 K CBA LBV . B LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
covale ? covale3 C SG CYS 19 C CYS 17 1_555 M CBA LBV . C LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.741 ? 
covale ? covale4 D SG CYS 19 D CYS 17 1_555 O CBA LBV . D LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale5 E SG CYS 19 E CYS 17 1_555 Q CBA LBV . E LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
covale ? covale6 F SG CYS 19 F CYS 17 1_555 S CBA LBV . F LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
covale ? covale7 G SG CYS 19 G CYS 17 1_555 U CBA LBV . G LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
covale ? covale8 H SG CYS 19 H CYS 17 1_555 W CBA LBV . H LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? 
#
_chem_comp.formula           'C33 H37 N4 O6 1' 
_chem_comp.formula_weight    585.67 
_chem_comp.id                LBV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2(R),3(E)- PHYTOCHROMOBILIN' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1A N_A LBV sing 173 n n 
C1A C2A LBV sing 174 n n 
C1B C2B LBV doub 175 n y 
C1B CHB LBV sing 176 n n 
O1B CGB LBV doub 177 n n 
C1C CHC LBV doub 178 z n 
C1D CHD LBV doub 179 z n 
C2A CMA LBV sing 180 n n 
C2A C3A LBV sing 181 n n 
C2B CMB LBV sing 182 n n 
C2C C1C LBV sing 183 n n 
O2C CGC LBV doub 184 n n 
C2D C1D LBV sing 185 n n 
C2D CMD LBV sing 186 n n 
C3A CAA LBV doub 187 e n 
C3B C2B LBV sing 188 n y 
C3B CAB LBV sing 189 n n 
C3C C2C LBV doub 190 n n 
C3C C4C LBV sing 191 n n 
C3D C2D LBV doub 192 n n 
C4A C3A LBV sing 193 n n 
C4A CHB LBV doub 194 z n 
C4B C3B LBV doub 195 n y 
C4B N_B LBV sing 196 n y 
C4C N_C LBV doub 197 n n 
C4D C3D LBV sing 198 n n 
C4D N_D LBV sing 199 n n 
CAA CBA LBV sing 200 n n 
CAC C2C LBV sing 201 n n 
CAC CBC LBV sing 202 n n 
CAD C3D LBV sing 203 n n 
CBB CAB LBV sing 204 n n 
CBB CGB LBV sing 205 n n 
CBD CAD LBV doub 206 n n 
CGB O2B LBV sing 207 n n 
CGC O1C LBV sing 208 n n 
CGC CBC LBV sing 209 n n 
CHC C4B LBV sing 210 n n 
CHD C4C LBV sing 211 n n 
CMC C3C LBV sing 212 n n 
N_A C4A LBV sing 213 n n 
O_A C1A LBV doub 214 n n 
N_B C1B LBV sing 215 n y 
N_C C1C LBV sing 216 n n 
N_D C1D LBV sing 217 n n 
O_D C4D LBV doub 218 n n 
O1C HO1C LBV sing 219 n n 
C2A H2A LBV sing 220 n n 
O2B HO2B LBV sing 221 n n 
CAA HAA1 LBV sing 222 n n 
CAB HAB1 LBV sing 223 n n 
CAB HAB2 LBV sing 224 n n 
CAC HAC1 LBV sing 225 n n 
CAC HAC2 LBV sing 226 n n 
CAD HAD1 LBV sing 227 n n 
CBA HBA1 LBV sing 228 n n 
CBA HBA2 LBV sing 229 n n 
CBA HBA3 LBV sing 230 n n 
CBB HBB1 LBV sing 231 n n 
CBB HBB2 LBV sing 232 n n 
CBC HBC1 LBV sing 233 n n 
CBC HBC2 LBV sing 234 n n 
CBD HBD1 LBV sing 235 n n 
CBD HBD2 LBV sing 236 n n 
CHB HHB1 LBV sing 237 n n 
CHC HHC1 LBV sing 238 n n 
CHD HHD1 LBV sing 239 n n 
CMA HMA1 LBV sing 240 n n 
CMA HMA2 LBV sing 241 n n 
CMA HMA3 LBV sing 242 n n 
CMB HMB1 LBV sing 243 n n 
CMB HMB2 LBV sing 244 n n 
CMB HMB3 LBV sing 245 n n 
CMC HMC1 LBV sing 246 n n 
CMC HMC2 LBV sing 247 n n 
CMC HMC3 LBV sing 248 n n 
CMD HMD1 LBV sing 249 n n 
CMD HMD2 LBV sing 250 n n 
CMD HMD3 LBV sing 251 n n 
N_A HAD LBV sing 252 n n 
N_B HAE LBV sing 253 n n 
N_C HAF LBV sing 254 n n 
N_D HAG LBV sing 255 n n 
#
_atom_sites.entry_id                     6SAW 
_atom_sites.fract_transf_matrix[1][1]    0.002901 
_atom_sites.fract_transf_matrix[1][2]    0.001675 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 LBV A 1 401 1 LBV LBV . 
J 3 CL A 1 402 1 CL CL . 
K 2 LBV B 1 401 2 LBV LBV . 
L 3 CL B 1 402 2 CL CL . 
M 2 LBV C 1 401 3 LBV LBV . 
N 3 CL C 1 402 3 CL CL . 
O 2 LBV D 1 401 4 LBV LBV . 
P 3 CL D 1 402 4 CL CL . 
Q 2 LBV E 1 401 5 LBV LBV . 
R 3 CL E 1 402 5 CL CL . 
S 2 LBV F 1 401 6 LBV LBV . 
T 3 CL F 1 402 6 CL CL . 
U 2 LBV G 1 401 7 LBV LBV . 
V 3 CL G 1 402 7 CL CL . 
W 2 LBV H 1 401 8 LBV LBV . 
X 3 CL H 1 402 8 CL CL . 
Y 4 HOH A 1 501 1 HOH HOH . 
Z 4 HOH B 1 501 2 HOH HOH . 
AA 4 HOH C 1 501 3 HOH HOH . 
BA 4 HOH D 1 501 4 HOH HOH . 
CA 4 HOH E 1 501 5 HOH HOH . 
DA 4 HOH F 1 501 6 HOH HOH . 
EA 4 HOH G 1 501 7 HOH HOH . 
FA 4 HOH H 1 501 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A LBV . . . Q 2 -52.534 30.329 120.684 1 69.39 ? C1A LBV 401 E 1 
HETATM 2 C C1B LBV . . . Q 2 -50.935 29.461 116.574 1 65 ? C1B LBV 401 E 1 
HETATM 3 O O1B LBV . . . Q 2 -45.999 27.408 112.837 1 68.95 ? O1B LBV 401 E 1 
HETATM 4 C C1C LBV . . . Q 2 -49.631 25.328 117.707 1 64.76 ? C1C LBV 401 E 1 
HETATM 5 O O1C LBV . . . Q 2 -46.459 22.133 118.736 1 66.28 ? O1C LBV 401 E 1 
HETATM 6 C C1D LBV . . . Q 2 -50.654 24.209 122.297 1 72.63 ? C1D LBV 401 E 1 
HETATM 7 C C2A LBV . . . Q 2 -53.587 31.162 120.262 1 68.17 ? C2A LBV 401 E 1 
HETATM 8 C C2B LBV . . . Q 2 -50.363 29.477 115.325 1 62.96 ? C2B LBV 401 E 1 
HETATM 9 O O2B LBV . . . Q 2 -47.428 28.725 111.754 1 65.43 ? O2B LBV 401 E 1 
HETATM 10 C C2C LBV . . . Q 2 -49.571 23.894 117.81 1 65.54 ? C2C LBV 401 E 1 
HETATM 11 O O2C LBV . . . Q 2 -46.364 23.658 117.126 1 79.76 ? O2C LBV 401 E 1 
HETATM 12 C C2D LBV . . . Q 2 -49.515 23.47 122.775 1 71.22 ? C2D LBV 401 E 1 
HETATM 13 C C3A LBV . . . Q 2 -53.405 31.319 118.847 1 70 ? C3A LBV 401 E 1 
HETATM 14 C C3B LBV . . . Q 2 -49.668 28.252 115.156 1 63.19 ? C3B LBV 401 E 1 
HETATM 15 C C3C LBV . . . Q 2 -50.005 23.546 119.101 1 68.45 ? C3C LBV 401 E 1 
HETATM 16 C C3D LBV . . . Q 2 -49.884 22.838 123.971 1 76.55 ? C3D LBV 401 E 1 
HETATM 17 C C4A LBV . . . Q 2 -52.257 30.593 118.48 1 68.51 ? C4A LBV 401 E 1 
HETATM 18 C C4B LBV . . . Q 2 -49.844 27.497 116.333 1 67.29 ? C4B LBV 401 E 1 
HETATM 19 C C4C LBV . . . Q 2 -50.31 24.753 119.783 1 68.54 ? C4C LBV 401 E 1 
HETATM 20 C C4D LBV . . . Q 2 -51.219 23.158 124.251 1 77.46 ? C4D LBV 401 E 1 
HETATM 21 C CAA LBV . . . Q 2 -54.194 32.045 117.941 1 78.72 ? CAA LBV 401 E 1 
HETATM 22 C CAB LBV . . . Q 2 -48.931 27.823 114.009 1 61.83 ? CAB LBV 401 E 1 
HETATM 23 C CAC LBV . . . Q 2 -49.148 23.023 116.738 1 62.21 ? CAC LBV 401 E 1 
HETATM 24 C CAD LBV . . . Q 2 -49.169 21.997 124.865 1 76.65 ? CAD LBV 401 E 1 
HETATM 25 C CBA LBV . . . Q 2 -55.365 32.783 118.25 1 89.31 ? CBA LBV 401 E 1 
HETATM 26 C CBB LBV . . . Q 2 -47.649 28.451 114.003 1 64.67 ? CBB LBV 401 E 1 
HETATM 27 C CBC LBV . . . Q 2 -48.069 22.085 117.105 1 65.22 ? CBC LBV 401 E 1 
HETATM 28 C CBD LBV . . . Q 2 -47.863 21.613 124.7 1 83.52 ? CBD LBV 401 E 1 
HETATM 29 C CGB LBV . . . Q 2 -46.972 28.167 112.767 1 69.48 ? CGB LBV 401 E 1 
HETATM 30 C CGC LBV . . . Q 2 -46.879 22.691 117.704 1 72.5 ? CGC LBV 401 E 1 
HETATM 31 C CHB LBV . . . Q 2 -51.719 30.472 117.197 1 68.49 ? CHB LBV 401 E 1 
HETATM 32 C CHC LBV . . . Q 2 -49.331 26.204 116.64 1 70.11 ? CHC LBV 401 E 1 
HETATM 33 C CHD LBV . . . Q 2 -50.762 24.984 121.126 1 71.22 ? CHD LBV 401 E 1 
HETATM 34 C CMA LBV . . . Q 2 -53.396 32.363 120.972 1 70.04 ? CMA LBV 401 E 1 
HETATM 35 C CMB LBV . . . Q 2 -50.462 30.534 114.392 1 59.39 ? CMB LBV 401 E 1 
HETATM 36 C CMC LBV . . . Q 2 -50.135 22.242 119.649 1 65.5 ? CMC LBV 401 E 1 
HETATM 37 C CMD LBV . . . Q 2 -48.273 23.468 122.087 1 65.21 ? CMD LBV 401 E 1 
HETATM 38 N N_A LBV . . . Q 2 -51.772 30.033 119.602 1 72.67 ? N_A LBV 401 E 1 
HETATM 39 O O_A LBV . . . Q 2 -52.257 29.918 121.811 1 68.64 ? O_A LBV 401 E 1 
HETATM 40 N N_B LBV . . . Q 2 -50.618 28.273 117.165 1 64.91 ? N_B LBV 401 E 1 
HETATM 41 N N_C LBV . . . Q 2 -50.076 25.781 118.917 1 66.54 ? N_C LBV 401 E 1 
HETATM 42 N N_D LBV . . . Q 2 -51.643 23.978 123.225 1 77.37 ? N_D LBV 401 E 1 
HETATM 43 O O_D LBV . . . Q 2 -51.98 22.844 125.181 1 72.44 ? O_D LBV 401 E 1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#