data_6SAW
#
_model_server_result.job_id            7R6fSSyvtfLHvllTlKJF7A 
_model_server_result.datetime_utc      '2024-11-07 19:36:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6saw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":401}' 
#
_entry.id    6SAW 
#
_exptl.entry_id    6SAW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              585.67 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6SAW 
_cell.length_a            344.65 
_cell.length_b            344.65 
_cell.length_c            92.44 
_cell.Z_PDB               72 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SAW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,I,J,Y 1 1 
C,M,N,AA 1 2 
B,K,L,Z 2 1 
E,Q,R,CA 2 2 
D,G,O,P,U,V,BA,EA 3 1 
F,H,S,T,W,X,DA,FA 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -92.44 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 19 A CYS 17 1_555 I CBA LBV . A LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
covale ? covale2 B SG CYS 19 B CYS 17 1_555 K CBA LBV . B LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? 
covale ? covale3 C SG CYS 19 C CYS 17 1_555 M CBA LBV . C LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.741 ? 
covale ? covale4 D SG CYS 19 D CYS 17 1_555 O CBA LBV . D LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 ? 
covale ? covale5 E SG CYS 19 E CYS 17 1_555 Q CBA LBV . E LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? 
covale ? covale6 F SG CYS 19 F CYS 17 1_555 S CBA LBV . F LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? 
covale ? covale7 G SG CYS 19 G CYS 17 1_555 U CBA LBV . G LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
covale ? covale8 H SG CYS 19 H CYS 17 1_555 W CBA LBV . H LBV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? 
#
_chem_comp.formula           'C33 H37 N4 O6 1' 
_chem_comp.formula_weight    585.67 
_chem_comp.id                LBV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '2(R),3(E)- PHYTOCHROMOBILIN' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1A N_A LBV sing 173 n n 
C1A C2A LBV sing 174 n n 
C1B C2B LBV doub 175 n y 
C1B CHB LBV sing 176 n n 
O1B CGB LBV doub 177 n n 
C1C CHC LBV doub 178 z n 
C1D CHD LBV doub 179 z n 
C2A CMA LBV sing 180 n n 
C2A C3A LBV sing 181 n n 
C2B CMB LBV sing 182 n n 
C2C C1C LBV sing 183 n n 
O2C CGC LBV doub 184 n n 
C2D C1D LBV sing 185 n n 
C2D CMD LBV sing 186 n n 
C3A CAA LBV doub 187 e n 
C3B C2B LBV sing 188 n y 
C3B CAB LBV sing 189 n n 
C3C C2C LBV doub 190 n n 
C3C C4C LBV sing 191 n n 
C3D C2D LBV doub 192 n n 
C4A C3A LBV sing 193 n n 
C4A CHB LBV doub 194 z n 
C4B C3B LBV doub 195 n y 
C4B N_B LBV sing 196 n y 
C4C N_C LBV doub 197 n n 
C4D C3D LBV sing 198 n n 
C4D N_D LBV sing 199 n n 
CAA CBA LBV sing 200 n n 
CAC C2C LBV sing 201 n n 
CAC CBC LBV sing 202 n n 
CAD C3D LBV sing 203 n n 
CBB CAB LBV sing 204 n n 
CBB CGB LBV sing 205 n n 
CBD CAD LBV doub 206 n n 
CGB O2B LBV sing 207 n n 
CGC O1C LBV sing 208 n n 
CGC CBC LBV sing 209 n n 
CHC C4B LBV sing 210 n n 
CHD C4C LBV sing 211 n n 
CMC C3C LBV sing 212 n n 
N_A C4A LBV sing 213 n n 
O_A C1A LBV doub 214 n n 
N_B C1B LBV sing 215 n y 
N_C C1C LBV sing 216 n n 
N_D C1D LBV sing 217 n n 
O_D C4D LBV doub 218 n n 
O1C HO1C LBV sing 219 n n 
C2A H2A LBV sing 220 n n 
O2B HO2B LBV sing 221 n n 
CAA HAA1 LBV sing 222 n n 
CAB HAB1 LBV sing 223 n n 
CAB HAB2 LBV sing 224 n n 
CAC HAC1 LBV sing 225 n n 
CAC HAC2 LBV sing 226 n n 
CAD HAD1 LBV sing 227 n n 
CBA HBA1 LBV sing 228 n n 
CBA HBA2 LBV sing 229 n n 
CBA HBA3 LBV sing 230 n n 
CBB HBB1 LBV sing 231 n n 
CBB HBB2 LBV sing 232 n n 
CBC HBC1 LBV sing 233 n n 
CBC HBC2 LBV sing 234 n n 
CBD HBD1 LBV sing 235 n n 
CBD HBD2 LBV sing 236 n n 
CHB HHB1 LBV sing 237 n n 
CHC HHC1 LBV sing 238 n n 
CHD HHD1 LBV sing 239 n n 
CMA HMA1 LBV sing 240 n n 
CMA HMA2 LBV sing 241 n n 
CMA HMA3 LBV sing 242 n n 
CMB HMB1 LBV sing 243 n n 
CMB HMB2 LBV sing 244 n n 
CMB HMB3 LBV sing 245 n n 
CMC HMC1 LBV sing 246 n n 
CMC HMC2 LBV sing 247 n n 
CMC HMC3 LBV sing 248 n n 
CMD HMD1 LBV sing 249 n n 
CMD HMD2 LBV sing 250 n n 
CMD HMD3 LBV sing 251 n n 
N_A HAD LBV sing 252 n n 
N_B HAE LBV sing 253 n n 
N_C HAF LBV sing 254 n n 
N_D HAG LBV sing 255 n n 
#
_atom_sites.entry_id                     6SAW 
_atom_sites.fract_transf_matrix[1][1]    0.002901 
_atom_sites.fract_transf_matrix[1][2]    0.001675 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00335 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 LBV A 1 401 1 LBV LBV . 
J 3 CL A 1 402 1 CL CL . 
K 2 LBV B 1 401 2 LBV LBV . 
L 3 CL B 1 402 2 CL CL . 
M 2 LBV C 1 401 3 LBV LBV . 
N 3 CL C 1 402 3 CL CL . 
O 2 LBV D 1 401 4 LBV LBV . 
P 3 CL D 1 402 4 CL CL . 
Q 2 LBV E 1 401 5 LBV LBV . 
R 3 CL E 1 402 5 CL CL . 
S 2 LBV F 1 401 6 LBV LBV . 
T 3 CL F 1 402 6 CL CL . 
U 2 LBV G 1 401 7 LBV LBV . 
V 3 CL G 1 402 7 CL CL . 
W 2 LBV H 1 401 8 LBV LBV . 
X 3 CL H 1 402 8 CL CL . 
Y 4 HOH A 1 501 1 HOH HOH . 
Z 4 HOH B 1 501 2 HOH HOH . 
AA 4 HOH C 1 501 3 HOH HOH . 
BA 4 HOH D 1 501 4 HOH HOH . 
CA 4 HOH E 1 501 5 HOH HOH . 
DA 4 HOH F 1 501 6 HOH HOH . 
EA 4 HOH G 1 501 7 HOH HOH . 
FA 4 HOH H 1 501 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A LBV . . . U 2 -1.06 48.053 86.877 1 75.41 ? C1A LBV 401 G 1 
HETATM 2 C C1B LBV . . . U 2 -0.516 45.286 90.454 1 68.09 ? C1B LBV 401 G 1 
HETATM 3 O O1B LBV . . . U 2 2.09 40.145 92.733 1 69.69 ? O1B LBV 401 G 1 
HETATM 4 C C1C LBV . . . U 2 3.859 44.758 89.831 1 64.61 ? C1C LBV 401 G 1 
HETATM 5 O O1C LBV . . . U 2 6.955 41.888 88.851 1 59.68 ? O1C LBV 401 G 1 
HETATM 6 C C1D LBV . . . U 2 5.474 47.125 85.873 1 65.57 ? C1D LBV 401 G 1 
HETATM 7 C C2A LBV . . . U 2 -2.012 48.89 87.511 1 77.99 ? C2A LBV 401 G 1 
HETATM 8 C C2B LBV . . . U 2 -0.673 44.293 91.391 1 66.24 ? C2B LBV 401 G 1 
HETATM 9 O O2B LBV . . . U 2 0.086 39.677 93.565 1 59.36 ? O2B LBV 401 G 1 
HETATM 10 C C2C LBV . . . U 2 5.258 44.907 89.965 1 66.69 ? C2C LBV 401 G 1 
HETATM 11 O O2C LBV . . . U 2 5.63 41.615 90.645 1 78.78 ? O2C LBV 401 G 1 
HETATM 12 C C2D LBV . . . U 2 6.472 46.323 85.23 1 63.76 ? C2D LBV 401 G 1 
HETATM 13 C C3A LBV . . . U 2 -2.321 48.253 88.77 1 75.9 ? C3A LBV 401 G 1 
HETATM 14 C C3B LBV . . . U 2 0.603 43.683 91.601 1 64.88 ? C3B LBV 401 G 1 
HETATM 15 C C3C LBV . . . U 2 5.717 45.67 88.868 1 66.36 ? C3C LBV 401 G 1 
HETATM 16 C C3D LBV . . . U 2 7.213 47.144 84.391 1 67.08 ? C3D LBV 401 G 1 
HETATM 17 C C4A LBV . . . U 2 -1.542 47.068 88.856 1 74 ? C4A LBV 401 G 1 
HETATM 18 C C4B LBV . . . U 2 1.53 44.351 90.779 1 68.28 ? C4B LBV 401 G 1 
HETATM 19 C C4C LBV . . . U 2 4.608 45.973 88.068 1 68.21 ? C4C LBV 401 G 1 
HETATM 20 C C4D LBV . . . U 2 6.708 48.44 84.489 1 69.32 ? C4D LBV 401 G 1 
HETATM 21 C CAA LBV . . . U 2 -3.205 48.697 89.774 1 78.94 ? CAA LBV 401 G 1 
HETATM 22 C CAB LBV . . . U 2 0.937 42.615 92.498 1 59.68 ? CAB LBV 401 G 1 
HETATM 23 C CAC LBV . . . U 2 6.009 44.35 91.047 1 68.08 ? CAC LBV 401 G 1 
HETATM 24 C CAD LBV . . . U 2 8.312 46.887 83.526 1 68.29 ? CAD LBV 401 G 1 
HETATM 25 C CBA LBV . . . U 2 -3.984 49.884 89.738 1 87.32 ? CBA LBV 401 G 1 
HETATM 26 C CBB LBV . . . U 2 0.306 41.396 92.115 1 60.66 ? CBB LBV 401 G 1 
HETATM 27 C CBC LBV . . . U 2 7.022 43.422 90.549 1 69.64 ? CBC LBV 401 G 1 
HETATM 28 C CBD LBV . . . U 2 8.901 45.659 83.345 1 67.73 ? CBD LBV 401 G 1 
HETATM 29 C CGB LBV . . . U 2 0.875 40.322 92.863 1 65.19 ? CGB LBV 401 G 1 
HETATM 30 C CGC LBV . . . U 2 6.477 42.22 89.969 1 73.17 ? CGC LBV 401 G 1 
HETATM 31 C CHB LBV . . . U 2 -1.523 46.15 89.921 1 71.64 ? CHB LBV 401 G 1 
HETATM 32 C CHC LBV . . . U 2 2.917 44.107 90.642 1 65.33 ? CHC LBV 401 G 1 
HETATM 33 C CHD LBV . . . U 2 4.506 46.714 86.821 1 70.68 ? CHD LBV 401 G 1 
HETATM 34 C CMA LBV . . . U 2 -3.102 48.972 86.617 1 79.68 ? CMA LBV 401 G 1 
HETATM 35 C CMB LBV . . . U 2 -1.898 43.96 92.003 1 67.06 ? CMB LBV 401 G 1 
HETATM 36 C CMC LBV . . . U 2 7.035 46.087 88.588 1 67.66 ? CMC LBV 401 G 1 
HETATM 37 C CMD LBV . . . U 2 6.586 44.931 85.474 1 64.24 ? CMD LBV 401 G 1 
HETATM 38 N N_A LBV . . . U 2 -0.818 46.988 87.706 1 76.14 ? N_A LBV 401 G 1 
HETATM 39 O O_A LBV . . . U 2 -0.511 48.182 85.771 1 68.52 ? O_A LBV 401 G 1 
HETATM 40 N N_B LBV . . . U 2 0.806 45.314 90.096 1 69.98 ? N_B LBV 401 G 1 
HETATM 41 N N_C LBV . . . U 2 3.52 45.41 88.679 1 68.76 ? N_C LBV 401 G 1 
HETATM 42 N N_D LBV . . . U 2 5.667 48.386 85.384 1 63.72 ? N_D LBV 401 G 1 
HETATM 43 O O_D LBV . . . U 2 7.032 49.5 83.941 1 72.54 ? O_D LBV 401 G 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    114 
_model_server_stats.query_time_ms           504 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#