data_6SAX # _model_server_result.job_id o6GR17PgAOs-QoEXWDo5lQ _model_server_result.datetime_utc '2025-07-07 19:20:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sax # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6SAX # _exptl.entry_id 6SAX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 585.67 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SAX _cell.length_a 149.96 _cell.length_b 149.96 _cell.length_c 77.52 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SAX _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 19 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 17 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CBA _struct_conn.ptnr2_label_comp_id LBV _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id LBV _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.774 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H37 N4 O6 1' _chem_comp.formula_weight 585.67 _chem_comp.id LBV _chem_comp.mon_nstd_flag . _chem_comp.name '3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2(R),3(E)- PHYTOCHROMOBILIN' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1A N_A LBV sing 173 n n C1A C2A LBV sing 174 n n C1B C2B LBV doub 175 n y C1B CHB LBV sing 176 n n O1B CGB LBV doub 177 n n C1C CHC LBV doub 178 z n C1D CHD LBV doub 179 z n C2A CMA LBV sing 180 n n C2A C3A LBV sing 181 n n C2B CMB LBV sing 182 n n C2C C1C LBV sing 183 n n O2C CGC LBV doub 184 n n C2D C1D LBV sing 185 n n C2D CMD LBV sing 186 n n C3A CAA LBV doub 187 e n C3B C2B LBV sing 188 n y C3B CAB LBV sing 189 n n C3C C2C LBV doub 190 n n C3C C4C LBV sing 191 n n C3D C2D LBV doub 192 n n C4A C3A LBV sing 193 n n C4A CHB LBV doub 194 z n C4B C3B LBV doub 195 n y C4B N_B LBV sing 196 n y C4C N_C LBV doub 197 n n C4D C3D LBV sing 198 n n C4D N_D LBV sing 199 n n CAA CBA LBV sing 200 n n CAC C2C LBV sing 201 n n CAC CBC LBV sing 202 n n CAD C3D LBV sing 203 n n CBB CAB LBV sing 204 n n CBB CGB LBV sing 205 n n CBD CAD LBV doub 206 n n CGB O2B LBV sing 207 n n CGC O1C LBV sing 208 n n CGC CBC LBV sing 209 n n CHC C4B LBV sing 210 n n CHD C4C LBV sing 211 n n CMC C3C LBV sing 212 n n N_A C4A LBV sing 213 n n O_A C1A LBV doub 214 n n N_B C1B LBV sing 215 n y N_C C1C LBV sing 216 n n N_D C1D LBV sing 217 n n O_D C4D LBV doub 218 n n O1C HO1C LBV sing 219 n n C2A H2A LBV sing 220 n n O2B HO2B LBV sing 221 n n CAA HAA1 LBV sing 222 n n CAB HAB1 LBV sing 223 n n CAB HAB2 LBV sing 224 n n CAC HAC1 LBV sing 225 n n CAC HAC2 LBV sing 226 n n CAD HAD1 LBV sing 227 n n CBA HBA1 LBV sing 228 n n CBA HBA2 LBV sing 229 n n CBA HBA3 LBV sing 230 n n CBB HBB1 LBV sing 231 n n CBB HBB2 LBV sing 232 n n CBC HBC1 LBV sing 233 n n CBC HBC2 LBV sing 234 n n CBD HBD1 LBV sing 235 n n CBD HBD2 LBV sing 236 n n CHB HHB1 LBV sing 237 n n CHC HHC1 LBV sing 238 n n CHD HHD1 LBV sing 239 n n CMA HMA1 LBV sing 240 n n CMA HMA2 LBV sing 241 n n CMA HMA3 LBV sing 242 n n CMB HMB1 LBV sing 243 n n CMB HMB2 LBV sing 244 n n CMB HMB3 LBV sing 245 n n CMC HMC1 LBV sing 246 n n CMC HMC2 LBV sing 247 n n CMC HMC3 LBV sing 248 n n CMD HMD1 LBV sing 249 n n CMD HMD2 LBV sing 250 n n CMD HMD3 LBV sing 251 n n N_A HAD LBV sing 252 n n N_B HAE LBV sing 253 n n N_C HAF LBV sing 254 n n N_D HAG LBV sing 255 n n # _atom_sites.entry_id 6SAX _atom_sites.fract_transf_matrix[1][1] 0.006668 _atom_sites.fract_transf_matrix[1][2] 0.00385 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0077 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LBV B 1 401 2 LBV LBV . D 2 LBV A 1 401 1 LBV LBV . E 3 HOH B 1 501 103 HOH HOH . E 3 HOH B 2 502 97 HOH HOH . E 3 HOH B 3 503 64 HOH HOH . E 3 HOH B 4 504 85 HOH HOH . E 3 HOH B 5 505 70 HOH HOH . E 3 HOH B 6 506 96 HOH HOH . E 3 HOH B 7 507 61 HOH HOH . E 3 HOH B 8 508 77 HOH HOH . E 3 HOH B 9 509 78 HOH HOH . E 3 HOH B 10 510 81 HOH HOH . E 3 HOH B 11 511 62 HOH HOH . E 3 HOH B 12 512 71 HOH HOH . E 3 HOH B 13 513 75 HOH HOH . E 3 HOH B 14 514 101 HOH HOH . E 3 HOH B 15 515 83 HOH HOH . E 3 HOH B 16 516 60 HOH HOH . E 3 HOH B 17 517 73 HOH HOH . E 3 HOH B 18 518 65 HOH HOH . E 3 HOH B 19 519 69 HOH HOH . E 3 HOH B 20 520 74 HOH HOH . E 3 HOH B 21 521 58 HOH HOH . E 3 HOH B 22 522 67 HOH HOH . E 3 HOH B 23 523 82 HOH HOH . E 3 HOH B 24 524 87 HOH HOH . E 3 HOH B 25 525 99 HOH HOH . E 3 HOH B 26 526 72 HOH HOH . E 3 HOH B 27 527 98 HOH HOH . E 3 HOH B 28 528 63 HOH HOH . E 3 HOH B 29 529 57 HOH HOH . E 3 HOH B 30 530 102 HOH HOH . E 3 HOH B 31 531 100 HOH HOH . E 3 HOH B 32 532 113 HOH HOH . E 3 HOH B 33 533 76 HOH HOH . E 3 HOH B 34 534 59 HOH HOH . E 3 HOH B 35 535 66 HOH HOH . E 3 HOH B 36 536 86 HOH HOH . E 3 HOH B 37 537 84 HOH HOH . E 3 HOH B 38 538 68 HOH HOH . F 3 HOH A 1 501 88 HOH HOH . F 3 HOH A 2 502 43 HOH HOH . F 3 HOH A 3 503 112 HOH HOH . F 3 HOH A 4 504 91 HOH HOH . F 3 HOH A 5 505 89 HOH HOH . F 3 HOH A 6 506 41 HOH HOH . F 3 HOH A 7 507 110 HOH HOH . F 3 HOH A 8 508 55 HOH HOH . F 3 HOH A 9 509 45 HOH HOH . F 3 HOH A 10 510 37 HOH HOH . F 3 HOH A 11 511 35 HOH HOH . F 3 HOH A 12 512 92 HOH HOH . F 3 HOH A 13 513 29 HOH HOH . F 3 HOH A 14 514 8 HOH HOH . F 3 HOH A 15 515 27 HOH HOH . F 3 HOH A 16 516 1 HOH HOH . F 3 HOH A 17 517 7 HOH HOH . F 3 HOH A 18 518 49 HOH HOH . F 3 HOH A 19 519 39 HOH HOH . F 3 HOH A 20 520 20 HOH HOH . F 3 HOH A 21 521 24 HOH HOH . F 3 HOH A 22 522 9 HOH HOH . F 3 HOH A 23 523 26 HOH HOH . F 3 HOH A 24 524 25 HOH HOH . F 3 HOH A 25 525 93 HOH HOH . F 3 HOH A 26 526 4 HOH HOH . F 3 HOH A 27 527 90 HOH HOH . F 3 HOH A 28 528 6 HOH HOH . F 3 HOH A 29 529 50 HOH HOH . F 3 HOH A 30 530 5 HOH HOH . F 3 HOH A 31 531 108 HOH HOH . F 3 HOH A 32 532 16 HOH HOH . F 3 HOH A 33 533 111 HOH HOH . F 3 HOH A 34 534 51 HOH HOH . F 3 HOH A 35 535 19 HOH HOH . F 3 HOH A 36 536 23 HOH HOH . F 3 HOH A 37 537 40 HOH HOH . F 3 HOH A 38 538 18 HOH HOH . F 3 HOH A 39 539 12 HOH HOH . F 3 HOH A 40 540 10 HOH HOH . F 3 HOH A 41 541 17 HOH HOH . F 3 HOH A 42 542 104 HOH HOH . F 3 HOH A 43 543 28 HOH HOH . F 3 HOH A 44 544 30 HOH HOH . F 3 HOH A 45 545 22 HOH HOH . F 3 HOH A 46 546 109 HOH HOH . F 3 HOH A 47 547 11 HOH HOH . F 3 HOH A 48 548 15 HOH HOH . F 3 HOH A 49 549 94 HOH HOH . F 3 HOH A 50 550 21 HOH HOH . F 3 HOH A 51 551 105 HOH HOH . F 3 HOH A 52 552 95 HOH HOH . F 3 HOH A 53 553 46 HOH HOH . F 3 HOH A 54 554 3 HOH HOH . F 3 HOH A 55 555 2 HOH HOH . F 3 HOH A 56 556 34 HOH HOH . F 3 HOH A 57 557 31 HOH HOH . F 3 HOH A 58 558 48 HOH HOH . F 3 HOH A 59 559 13 HOH HOH . F 3 HOH A 60 560 33 HOH HOH . F 3 HOH A 61 561 52 HOH HOH . F 3 HOH A 62 562 14 HOH HOH . F 3 HOH A 63 563 53 HOH HOH . F 3 HOH A 64 564 38 HOH HOH . F 3 HOH A 65 565 54 HOH HOH . F 3 HOH A 66 566 32 HOH HOH . F 3 HOH A 67 567 36 HOH HOH . F 3 HOH A 68 568 44 HOH HOH . F 3 HOH A 69 569 107 HOH HOH . F 3 HOH A 70 570 106 HOH HOH . F 3 HOH A 71 571 42 HOH HOH . F 3 HOH A 72 572 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1A LBV . . . C 2 -91.717 -16.468 -28.259 1 47.32 ? C1A LBV 401 B 1 HETATM 2 C C1B LBV . . . C 2 -92.863 -12.492 -26.23 1 48.96 ? C1B LBV 401 B 1 HETATM 3 O O1B LBV . . . C 2 -92.544 -7.733 -22.261 1 50.46 ? O1B LBV 401 B 1 HETATM 4 C C1C LBV . . . C 2 -88.792 -10.825 -24.869 1 41.23 ? C1C LBV 401 B 1 HETATM 5 O O1C LBV . . . C 2 -85.825 -9.09 -21.419 1 39.96 ? O1C LBV 401 B 1 HETATM 6 C C1D LBV . . . C 2 -84.825 -13.229 -26.09 1 35.56 ? C1D LBV 401 B 1 HETATM 7 C C2A LBV . . . C 2 -92.967 -16.678 -28.891 1 53.4 ? C2A LBV 401 B 1 HETATM 8 C C2B LBV . . . C 2 -93.55 -11.458 -25.631 1 51.33 ? C2B LBV 401 B 1 HETATM 9 O O2B LBV . . . C 2 -94.269 -8.724 -21.263 1 51.92 ? O2B LBV 401 B 1 HETATM 10 C C2C LBV . . . C 2 -87.667 -10.119 -24.339 1 40.72 ? C2C LBV 401 B 1 HETATM 11 O O2C LBV . . . C 2 -86.903 -10.985 -21.005 1 39.97 ? O2C LBV 401 B 1 HETATM 12 C C2D LBV . . . C 2 -83.955 -13.774 -27.071 1 41.26 ? C2D LBV 401 B 1 HETATM 13 C C3A LBV . . . C 2 -93.796 -15.576 -28.466 1 57.19 ? C3A LBV 401 B 1 HETATM 14 C C3B LBV . . . C 2 -92.609 -10.622 -24.991 1 52.69 ? C3B LBV 401 B 1 HETATM 15 C C3C LBV . . . C 2 -86.533 -10.739 -24.781 1 38.19 ? C3C LBV 401 B 1 HETATM 16 C C3D LBV . . . C 2 -82.736 -14.035 -26.481 1 38.85 ? C3D LBV 401 B 1 HETATM 17 C C4A LBV . . . C 2 -93.015 -14.747 -27.619 1 51.34 ? C4A LBV 401 B 1 HETATM 18 C C4B LBV . . . C 2 -91.342 -11.144 -25.212 1 45.97 ? C4B LBV 401 B 1 HETATM 19 C C4C LBV . . . C 2 -86.922 -11.85 -25.58 1 39.43 ? C4C LBV 401 B 1 HETATM 20 C C4D LBV . . . C 2 -82.812 -13.656 -25.128 1 35.77 ? C4D LBV 401 B 1 HETATM 21 C CAA LBV . . . C 2 -95.132 -15.31 -28.824 1 58.52 ? CAA LBV 401 B 1 HETATM 22 C CAB LBV . . . C 2 -92.868 -9.437 -24.241 1 47.58 ? CAB LBV 401 B 1 HETATM 23 C CAC LBV . . . C 2 -87.717 -8.956 -23.505 1 40.02 ? CAC LBV 401 B 1 HETATM 24 C CAD LBV . . . C 2 -81.566 -14.597 -27.068 1 38.19 ? CAD LBV 401 B 1 HETATM 25 C CBA LBV . . . C 2 -95.941 -16.113 -29.676 1 59.31 ? CBA LBV 401 B 1 HETATM 26 C CBB LBV . . . C 2 -93.183 -9.827 -22.908 1 51.37 ? CBB LBV 401 B 1 HETATM 27 C CBC LBV . . . C 2 -87.989 -9.324 -22.136 1 37.17 ? CBC LBV 401 B 1 HETATM 28 C CBD LBV . . . C 2 -80.391 -14.813 -26.377 1 34.73 ? CBD LBV 401 B 1 HETATM 29 C CGB LBV . . . C 2 -93.341 -8.665 -22.082 1 53.97 ? CGB LBV 401 B 1 HETATM 30 C CGC LBV . . . C 2 -86.81 -9.844 -21.473 1 43.23 ? CGC LBV 401 B 1 HETATM 31 C CHB LBV . . . C 2 -93.454 -13.567 -27 1 52.11 ? CHB LBV 401 B 1 HETATM 32 C CHC LBV . . . C 2 -90.155 -10.573 -24.706 1 45.38 ? CHC LBV 401 B 1 HETATM 33 C CHD LBV . . . C 2 -86.142 -12.822 -26.275 1 35.3 ? CHD LBV 401 B 1 HETATM 34 C CMA LBV . . . C 2 -93.42 -17.95 -28.468 1 57.76 ? CMA LBV 401 B 1 HETATM 35 C CMB LBV . . . C 2 -94.952 -11.276 -25.655 1 44.6 ? CMB LBV 401 B 1 HETATM 36 C CMC LBV . . . C 2 -85.233 -10.326 -24.494 1 33.71 ? CMC LBV 401 B 1 HETATM 37 C CMD LBV . . . C 2 -84.359 -13.987 -28.412 1 36.61 ? CMD LBV 401 B 1 HETATM 38 N N_A LBV . . . C 2 -91.794 -15.325 -27.527 1 49.1 ? N_A LBV 401 B 1 HETATM 39 O O_A LBV . . . C 2 -90.7 -17.146 -28.305 1 46.27 ? O_A LBV 401 B 1 HETATM 40 N N_B LBV . . . C 2 -91.517 -12.294 -25.976 1 41.38 ? N_B LBV 401 B 1 HETATM 41 N N_C LBV . . . C 2 -88.284 -11.86 -25.604 1 40.48 ? N_C LBV 401 B 1 HETATM 42 N N_D LBV . . . C 2 -84.086 -13.185 -24.943 1 28.22 ? N_D LBV 401 B 1 HETATM 43 O O_D LBV . . . C 2 -82.007 -13.685 -24.189 1 37.69 ? O_D LBV 401 B 1 # _model_server_stats.io_time_ms 170 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #