data_6SAY # _model_server_result.job_id YW5z5LGEml7Yn_2izIFtxg _model_server_result.datetime_utc '2024-11-23 07:13:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6say # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 6SAY # _exptl.entry_id 6SAY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.156 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8~{a}~{S})-1,5,6,7,8,8~{a}-hexahydro-[1,3]oxazolo[3,4-a]pyrazin-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.676 _cell.angle_gamma 90 _cell.entry_id 6SAY _cell.length_a 42.39 _cell.length_b 41.508 _cell.length_c 72.214 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SAY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 67 A ASN 62 1_555 D HG HG . A HG 303 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.843 ? metalc ? metalc2 A ND1 HIS 69 A HIS 64 1_555 D HG HG . A HG 303 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.191 ? metalc ? metalc3 A OD1 ASP 77 A ASP 72 1_555 E HG HG . A HG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.118 ? metalc ? metalc4 A NE2 HIS 99 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc5 A NE2 HIS 101 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc6 A ND1 HIS 124 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc7 A O GLN 141 A GLN 137 1_555 F HG BE7 . A BE7 305 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.853 ? metalc ? metalc8 A O GLU 209 A GLU 205 1_555 F HG BE7 . A BE7 305 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.077 ? metalc ? metalc9 A SG CYS 210 A CYS 206 1_555 C HG HG . A HG 302 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.783 ? metalc ? metalc10 A SG CYS 210 A CYS 206 1_555 F HG BE7 . A BE7 305 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.367 ? metalc ? metalc11 C HG HG . A HG 302 1_555 I O HOH . A HOH 493 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc12 F HG BE7 . A BE7 305 1_555 I O HOH . A HOH 493 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.019 ? # _chem_comp.formula 'C6 H10 N2 O2' _chem_comp.formula_weight 142.156 _chem_comp.id L3Q _chem_comp.mon_nstd_flag . _chem_comp.name (8~{a}~{S})-1,5,6,7,8,8~{a}-hexahydro-[1,3]oxazolo[3,4-a]pyrazin-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C L3Q doub 198 n n O1 C L3Q sing 199 n n O1 C1 L3Q sing 200 n n C N1 L3Q sing 201 n n C1 C2 L3Q sing 202 n n N1 C5 L3Q sing 203 n n N1 C2 L3Q sing 204 n n C5 C4 L3Q sing 205 n n C4 N L3Q sing 206 n n C2 C3 L3Q sing 207 n n C3 N L3Q sing 208 n n C4 H1 L3Q sing 209 n n C4 H2 L3Q sing 210 n n C5 H3 L3Q sing 211 n n C5 H4 L3Q sing 212 n n N H5 L3Q sing 213 n n C1 H7 L3Q sing 214 n n C1 H8 L3Q sing 215 n n C2 H9 L3Q sing 216 n n C3 H10 L3Q sing 217 n n C3 H11 L3Q sing 218 n n # _atom_sites.entry_id 6SAY _atom_sites.fract_transf_matrix[1][1] 0.02359 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006178 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 HG A 1 302 1 HG HG . D 3 HG A 1 303 2 HG HG . E 3 HG A 1 304 3 HG HG . F 4 BE7 A 1 305 1 BE7 BE7 . G 5 DMS A 1 306 2 DMS DMS . H 6 L3Q A 1 307 1 L3Q XXX . I 7 HOH A 1 401 148 HOH HOH . I 7 HOH A 2 402 149 HOH HOH . I 7 HOH A 3 403 237 HOH HOH . I 7 HOH A 4 404 221 HOH HOH . I 7 HOH A 5 405 29 HOH HOH . I 7 HOH A 6 406 226 HOH HOH . I 7 HOH A 7 407 3 HOH HOH . I 7 HOH A 8 408 190 HOH HOH . I 7 HOH A 9 409 227 HOH HOH . I 7 HOH A 10 410 67 HOH HOH . I 7 HOH A 11 411 216 HOH HOH . I 7 HOH A 12 412 112 HOH HOH . I 7 HOH A 13 413 223 HOH HOH . I 7 HOH A 14 414 186 HOH HOH . I 7 HOH A 15 415 147 HOH HOH . I 7 HOH A 16 416 120 HOH HOH . I 7 HOH A 17 417 183 HOH HOH . I 7 HOH A 18 418 72 HOH HOH . I 7 HOH A 19 419 240 HOH HOH . I 7 HOH A 20 420 45 HOH HOH . I 7 HOH A 21 421 90 HOH HOH . I 7 HOH A 22 422 146 HOH HOH . I 7 HOH A 23 423 7 HOH HOH . I 7 HOH A 24 424 1 HOH HOH . I 7 HOH A 25 425 143 HOH HOH . I 7 HOH A 26 426 114 HOH HOH . I 7 HOH A 27 427 171 HOH HOH . I 7 HOH A 28 428 174 HOH HOH . I 7 HOH A 29 429 34 HOH HOH . I 7 HOH A 30 430 218 HOH HOH . I 7 HOH A 31 431 232 HOH HOH . I 7 HOH A 32 432 58 HOH HOH . I 7 HOH A 33 433 200 HOH HOH . I 7 HOH A 34 434 60 HOH HOH . I 7 HOH A 35 435 167 HOH HOH . I 7 HOH A 36 436 54 HOH HOH . I 7 HOH A 37 437 28 HOH HOH . I 7 HOH A 38 438 168 HOH HOH . I 7 HOH A 39 439 81 HOH HOH . I 7 HOH A 40 440 126 HOH HOH . I 7 HOH A 41 441 185 HOH HOH . I 7 HOH A 42 442 181 HOH HOH . I 7 HOH A 43 443 150 HOH HOH . I 7 HOH A 44 444 197 HOH HOH . I 7 HOH A 45 445 38 HOH HOH . I 7 HOH A 46 446 161 HOH HOH . I 7 HOH A 47 447 65 HOH HOH . I 7 HOH A 48 448 117 HOH HOH . I 7 HOH A 49 449 24 HOH HOH . I 7 HOH A 50 450 33 HOH HOH . I 7 HOH A 51 451 94 HOH HOH . I 7 HOH A 52 452 124 HOH HOH . I 7 HOH A 53 453 22 HOH HOH . I 7 HOH A 54 454 5 HOH HOH . I 7 HOH A 55 455 56 HOH HOH . I 7 HOH A 56 456 83 HOH HOH . I 7 HOH A 57 457 176 HOH HOH . I 7 HOH A 58 458 92 HOH HOH . I 7 HOH A 59 459 97 HOH HOH . I 7 HOH A 60 460 70 HOH HOH . I 7 HOH A 61 461 145 HOH HOH . I 7 HOH A 62 462 134 HOH HOH . I 7 HOH A 63 463 21 HOH HOH . I 7 HOH A 64 464 11 HOH HOH . I 7 HOH A 65 465 9 HOH HOH . I 7 HOH A 66 466 71 HOH HOH . I 7 HOH A 67 467 32 HOH HOH . I 7 HOH A 68 468 180 HOH HOH . I 7 HOH A 69 469 2 HOH HOH . I 7 HOH A 70 470 42 HOH HOH . I 7 HOH A 71 471 86 HOH HOH . I 7 HOH A 72 472 192 HOH HOH . I 7 HOH A 73 473 110 HOH HOH . I 7 HOH A 74 474 8 HOH HOH . I 7 HOH A 75 475 213 HOH HOH . I 7 HOH A 76 476 39 HOH HOH . I 7 HOH A 77 477 121 HOH HOH . I 7 HOH A 78 478 229 HOH HOH . I 7 HOH A 79 479 91 HOH HOH . I 7 HOH A 80 480 26 HOH HOH . I 7 HOH A 81 481 37 HOH HOH . I 7 HOH A 82 482 49 HOH HOH . I 7 HOH A 83 483 109 HOH HOH . I 7 HOH A 84 484 162 HOH HOH . I 7 HOH A 85 485 116 HOH HOH . I 7 HOH A 86 486 79 HOH HOH . I 7 HOH A 87 487 184 HOH HOH . I 7 HOH A 88 488 44 HOH HOH . I 7 HOH A 89 489 133 HOH HOH . I 7 HOH A 90 490 6 HOH HOH . I 7 HOH A 91 491 23 HOH HOH . I 7 HOH A 92 492 111 HOH HOH . I 7 HOH A 93 493 95 HOH HOH . I 7 HOH A 94 494 193 HOH HOH . I 7 HOH A 95 495 15 HOH HOH . I 7 HOH A 96 496 93 HOH HOH . I 7 HOH A 97 497 225 HOH HOH . I 7 HOH A 98 498 30 HOH HOH . I 7 HOH A 99 499 80 HOH HOH . I 7 HOH A 100 500 20 HOH HOH . I 7 HOH A 101 501 47 HOH HOH . I 7 HOH A 102 502 55 HOH HOH . I 7 HOH A 103 503 25 HOH HOH . I 7 HOH A 104 504 51 HOH HOH . I 7 HOH A 105 505 159 HOH HOH . I 7 HOH A 106 506 13 HOH HOH . I 7 HOH A 107 507 17 HOH HOH . I 7 HOH A 108 508 125 HOH HOH . I 7 HOH A 109 509 73 HOH HOH . I 7 HOH A 110 510 10 HOH HOH . I 7 HOH A 111 511 142 HOH HOH . I 7 HOH A 112 512 219 HOH HOH . I 7 HOH A 113 513 127 HOH HOH . I 7 HOH A 114 514 172 HOH HOH . I 7 HOH A 115 515 41 HOH HOH . I 7 HOH A 116 516 82 HOH HOH . I 7 HOH A 117 517 27 HOH HOH . I 7 HOH A 118 518 64 HOH HOH . I 7 HOH A 119 519 52 HOH HOH . I 7 HOH A 120 520 209 HOH HOH . I 7 HOH A 121 521 19 HOH HOH . I 7 HOH A 122 522 102 HOH HOH . I 7 HOH A 123 523 228 HOH HOH . I 7 HOH A 124 524 62 HOH HOH . I 7 HOH A 125 525 207 HOH HOH . I 7 HOH A 126 526 169 HOH HOH . I 7 HOH A 127 527 158 HOH HOH . I 7 HOH A 128 528 177 HOH HOH . I 7 HOH A 129 529 43 HOH HOH . I 7 HOH A 130 530 14 HOH HOH . I 7 HOH A 131 531 48 HOH HOH . I 7 HOH A 132 532 96 HOH HOH . I 7 HOH A 133 533 115 HOH HOH . I 7 HOH A 134 534 88 HOH HOH . I 7 HOH A 135 535 46 HOH HOH . I 7 HOH A 136 536 74 HOH HOH . I 7 HOH A 137 537 36 HOH HOH . I 7 HOH A 138 538 76 HOH HOH . I 7 HOH A 139 539 217 HOH HOH . I 7 HOH A 140 540 101 HOH HOH . I 7 HOH A 141 541 156 HOH HOH . I 7 HOH A 142 542 230 HOH HOH . I 7 HOH A 143 543 215 HOH HOH . I 7 HOH A 144 544 16 HOH HOH . I 7 HOH A 145 545 222 HOH HOH . I 7 HOH A 146 546 35 HOH HOH . I 7 HOH A 147 547 106 HOH HOH . I 7 HOH A 148 548 50 HOH HOH . I 7 HOH A 149 549 205 HOH HOH . I 7 HOH A 150 550 53 HOH HOH . I 7 HOH A 151 551 4 HOH HOH . I 7 HOH A 152 552 175 HOH HOH . I 7 HOH A 153 553 89 HOH HOH . I 7 HOH A 154 554 107 HOH HOH . I 7 HOH A 155 555 31 HOH HOH . I 7 HOH A 156 556 188 HOH HOH . I 7 HOH A 157 557 166 HOH HOH . I 7 HOH A 158 558 231 HOH HOH . I 7 HOH A 159 559 85 HOH HOH . I 7 HOH A 160 560 164 HOH HOH . I 7 HOH A 161 561 194 HOH HOH . I 7 HOH A 162 562 57 HOH HOH . I 7 HOH A 163 563 137 HOH HOH . I 7 HOH A 164 564 204 HOH HOH . I 7 HOH A 165 565 239 HOH HOH . I 7 HOH A 166 566 214 HOH HOH . I 7 HOH A 167 567 208 HOH HOH . I 7 HOH A 168 568 132 HOH HOH . I 7 HOH A 169 569 61 HOH HOH . I 7 HOH A 170 570 152 HOH HOH . I 7 HOH A 171 571 105 HOH HOH . I 7 HOH A 172 572 196 HOH HOH . I 7 HOH A 173 573 77 HOH HOH . I 7 HOH A 174 574 129 HOH HOH . I 7 HOH A 175 575 12 HOH HOH . I 7 HOH A 176 576 84 HOH HOH . I 7 HOH A 177 577 170 HOH HOH . I 7 HOH A 178 578 203 HOH HOH . I 7 HOH A 179 579 100 HOH HOH . I 7 HOH A 180 580 98 HOH HOH . I 7 HOH A 181 581 99 HOH HOH . I 7 HOH A 182 582 234 HOH HOH . I 7 HOH A 183 583 78 HOH HOH . I 7 HOH A 184 584 135 HOH HOH . I 7 HOH A 185 585 210 HOH HOH . I 7 HOH A 186 586 157 HOH HOH . I 7 HOH A 187 587 211 HOH HOH . I 7 HOH A 188 588 182 HOH HOH . I 7 HOH A 189 589 63 HOH HOH . I 7 HOH A 190 590 87 HOH HOH . I 7 HOH A 191 591 212 HOH HOH . I 7 HOH A 192 592 178 HOH HOH . I 7 HOH A 193 593 163 HOH HOH . I 7 HOH A 194 594 18 HOH HOH . I 7 HOH A 195 595 103 HOH HOH . I 7 HOH A 196 596 40 HOH HOH . I 7 HOH A 197 597 139 HOH HOH . I 7 HOH A 198 598 233 HOH HOH . I 7 HOH A 199 599 224 HOH HOH . I 7 HOH A 200 600 165 HOH HOH . I 7 HOH A 201 601 206 HOH HOH . I 7 HOH A 202 602 151 HOH HOH . I 7 HOH A 203 603 198 HOH HOH . I 7 HOH A 204 604 235 HOH HOH . I 7 HOH A 205 605 75 HOH HOH . I 7 HOH A 206 606 128 HOH HOH . I 7 HOH A 207 607 141 HOH HOH . I 7 HOH A 208 608 119 HOH HOH . I 7 HOH A 209 609 201 HOH HOH . I 7 HOH A 210 610 136 HOH HOH . I 7 HOH A 211 611 138 HOH HOH . I 7 HOH A 212 612 191 HOH HOH . I 7 HOH A 213 613 179 HOH HOH . I 7 HOH A 214 614 144 HOH HOH . I 7 HOH A 215 615 130 HOH HOH . I 7 HOH A 216 616 104 HOH HOH . I 7 HOH A 217 617 113 HOH HOH . I 7 HOH A 218 618 202 HOH HOH . I 7 HOH A 219 619 140 HOH HOH . I 7 HOH A 220 620 236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 L3Q . . . H 6 -16.363 -8.974 105.34 0.88 18.22 ? C4 L3Q 307 A 1 HETATM 2 C C5 L3Q . . . H 6 -14.889 -9.233 105.179 0.88 18.17 ? C5 L3Q 307 A 1 HETATM 3 N N1 L3Q . . . H 6 -14.679 -10.637 104.813 0.88 18.43 ? N1 L3Q 307 A 1 HETATM 4 N N L3Q . . . H 6 -16.916 -9.915 106.311 0.88 17.9 ? N L3Q 307 A 1 HETATM 5 C C L3Q . . . H 6 -14.303 -11.058 103.586 0.88 18.87 ? C L3Q 307 A 1 HETATM 6 O O L3Q . . . H 6 -13.777 -10.421 102.711 0.88 17.98 ? O L3Q 307 A 1 HETATM 7 C C1 L3Q . . . H 6 -15.102 -12.903 104.701 0.88 19.26 ? C1 L3Q 307 A 1 HETATM 8 C C2 L3Q . . . H 6 -15.341 -11.691 105.601 0.88 18.12 ? C2 L3Q 307 A 1 HETATM 9 C C3 L3Q . . . H 6 -16.816 -11.3 105.842 0.88 18.1 ? C3 L3Q 307 A 1 HETATM 10 O O1 L3Q . . . H 6 -14.551 -12.379 103.467 0.88 19.75 ? O1 L3Q 307 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #