data_6SB2 # _model_server_result.job_id ahdKuxigkf6WhVMetZoKmQ _model_server_result.datetime_utc '2024-10-20 01:29:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 6SB2 # _exptl.entry_id 6SB2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SB2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 M N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 6SB2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 GTP C 1 401 401 GTP GTP . L 7 GDP D 1 401 401 GDP GDP . M 6 GTP I 1 401 401 GTP GTP . N 7 GDP J 1 401 401 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . K 6 126.844 256.909 200.4 1 465.96 ? PG GTP 401 C 1 HETATM 2 O O1G GTP . . . K 6 126.803 256.248 201.743 1 452.72 ? O1G GTP 401 C 1 HETATM 3 O O2G GTP . . . K 6 127.358 258.299 200.482 1 467.94 ? O2G GTP 401 C 1 HETATM 4 O O3G GTP . . . K 6 127.578 256.097 199.377 1 456.92 ? O3G GTP 401 C 1 HETATM 5 O O3B GTP . . . K 6 125.339 257.057 199.817 1 469.29 ? O3B GTP 401 C 1 HETATM 6 P PB GTP . . . K 6 124.153 256.021 199.502 1 460.38 ? PB GTP 401 C 1 HETATM 7 O O1B GTP . . . K 6 124.285 254.906 200.484 1 454.09 ? O1B GTP 401 C 1 HETATM 8 O O2B GTP . . . K 6 124.134 255.718 198.053 1 465.58 ? O2B GTP 401 C 1 HETATM 9 O O3A GTP . . . K 6 122.869 256.927 199.793 1 460.15 ? O3A GTP 401 C 1 HETATM 10 P PA GTP . . . K 6 121.718 256.863 200.903 1 459.23 ? PA GTP 401 C 1 HETATM 11 O O1A GTP . . . K 6 122.304 256.942 202.272 1 468.01 ? O1A GTP 401 C 1 HETATM 12 O O2A GTP . . . K 6 120.834 255.697 200.593 1 461.32 ? O2A GTP 401 C 1 HETATM 13 O O5' GTP . . . K 6 120.966 258.246 200.617 1 465.09 ? O5' GTP 401 C 1 HETATM 14 C C5' GTP . . . K 6 120.172 258.43 199.44 1 461.8 ? C5' GTP 401 C 1 HETATM 15 C C4' GTP . . . K 6 119.25 259.606 199.659 1 460.84 ? C4' GTP 401 C 1 HETATM 16 O O4' GTP . . . K 6 118.327 259.637 198.547 1 472.39 ? O4' GTP 401 C 1 HETATM 17 C C3' GTP . . . K 6 118.335 259.543 200.891 1 466.11 ? C3' GTP 401 C 1 HETATM 18 O O3' GTP . . . K 6 117.658 260.758 201.178 1 467.58 ? O3' GTP 401 C 1 HETATM 19 C C2' GTP . . . K 6 117.25 258.599 200.386 1 468.42 ? C2' GTP 401 C 1 HETATM 20 O O2' GTP . . . K 6 116.061 258.682 201.142 1 464.27 ? O2' GTP 401 C 1 HETATM 21 C C1' GTP . . . K 6 117.084 259.113 198.956 1 468.58 ? C1' GTP 401 C 1 HETATM 22 N N9 GTP . . . K 6 116.69 258.064 198.031 1 465.92 ? N9 GTP 401 C 1 HETATM 23 C C8 GTP . . . K 6 117.143 256.771 198.006 1 460.63 ? C8 GTP 401 C 1 HETATM 24 N N7 GTP . . . K 6 116.559 256.034 197.094 1 465.52 ? N7 GTP 401 C 1 HETATM 25 C C5 GTP . . . K 6 115.667 256.902 196.485 1 467.76 ? C5 GTP 401 C 1 HETATM 26 C C6 GTP . . . K 6 114.761 256.674 195.427 1 463.56 ? C6 GTP 401 C 1 HETATM 27 O O6 GTP . . . K 6 114.557 255.622 194.811 1 468.92 ? O6 GTP 401 C 1 HETATM 28 N N1 GTP . . . K 6 114.031 257.821 195.127 1 467.72 ? N1 GTP 401 C 1 HETATM 29 C C2 GTP . . . K 6 114.169 259.037 195.749 1 463.73 ? C2 GTP 401 C 1 HETATM 30 N N2 GTP . . . K 6 113.384 260.025 195.309 1 464.23 ? N2 GTP 401 C 1 HETATM 31 N N3 GTP . . . K 6 115.023 259.263 196.744 1 468.56 ? N3 GTP 401 C 1 HETATM 32 C C4 GTP . . . K 6 115.736 258.155 197.052 1 466.54 ? C4 GTP 401 C 1 # _model_server_stats.io_time_ms 135 _model_server_stats.parse_time_ms 121 _model_server_stats.create_model_time_ms 152 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #