data_6SB5
#
_model_server_result.job_id            y6OEME2GAVVz3cMDCePR2Q 
_model_server_result.datetime_utc      '2025-03-06 07:57:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sb5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":701}' 
#
_entry.id    6SB5 
#
_exptl.entry_id    6SB5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    32 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SB5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SB5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
? 2 CA N N 
? 2 DA N N 
? 2 EA N N 
? 2 FA N N 
? 2 GA N N 
? 2 HA N N 
? 2 IA N N 
? 2 JA N N 
? 2 KA N N 
? 2 LA N N 
? 2 MA N N 
? 2 NA N N 
? 2 OA N N 
? 2 PA N N 
? 2 QA N N 
? 2 RA N N 
? 2 SA N N 
? 2 TA N N 
? 2 UA N N 
? 2 VA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 A CYS 34 1_555 A SG CYS 54 A CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 18 B CYS 34 1_555 B SG CYS 54 B CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 C SG CYS 18 C CYS 34 1_555 C SG CYS 54 C CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 D SG CYS 18 D CYS 34 1_555 D SG CYS 54 D CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 E SG CYS 18 E CYS 34 1_555 E SG CYS 54 E CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf6 F SG CYS 18 F CYS 34 1_555 F SG CYS 54 F CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf7 G SG CYS 18 G CYS 34 1_555 G SG CYS 54 G CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 H SG CYS 18 H CYS 34 1_555 H SG CYS 54 H CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 I SG CYS 18 I CYS 34 1_555 I SG CYS 54 I CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf10 J SG CYS 18 J CYS 34 1_555 J SG CYS 54 J CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 K SG CYS 18 K CYS 34 1_555 K SG CYS 54 K CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf12 L SG CYS 18 L CYS 34 1_555 L SG CYS 54 L CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 M SG CYS 18 M CYS 34 1_555 M SG CYS 54 M CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 N SG CYS 18 N CYS 34 1_555 N SG CYS 54 N CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf15 O SG CYS 18 O CYS 34 1_555 O SG CYS 54 O CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf16 P SG CYS 18 P CYS 34 1_555 P SG CYS 54 P CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A ND2 ASN 169 A ASN 185 1_555 R C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale2 A ND2 ASN 253 A ASN 269 1_555 Q C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 B ND2 ASN 169 B ASN 185 1_555 T C1 NAG . B NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale4 B ND2 ASN 253 B ASN 269 1_555 S C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale5 C ND2 ASN 169 C ASN 185 1_555 V C1 NAG . C NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale6 C ND2 ASN 253 C ASN 269 1_555 U C1 NAG . C NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale7 D ND2 ASN 169 D ASN 185 1_555 X C1 NAG . D NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale8 D ND2 ASN 253 D ASN 269 1_555 W C1 NAG . D NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale9 E ND2 ASN 169 E ASN 185 1_555 Z C1 NAG . E NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale10 E ND2 ASN 253 E ASN 269 1_555 Y C1 NAG . E NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale11 F ND2 ASN 169 F ASN 185 1_555 BA C1 NAG . F NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale12 F ND2 ASN 253 F ASN 269 1_555 AA C1 NAG . F NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale13 G ND2 ASN 169 G ASN 185 1_555 DA C1 NAG . G NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale14 G ND2 ASN 253 G ASN 269 1_555 CA C1 NAG . G NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale15 H ND2 ASN 169 H ASN 185 1_555 FA C1 NAG . H NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale16 H ND2 ASN 253 H ASN 269 1_555 EA C1 NAG . H NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale17 I ND2 ASN 169 I ASN 185 1_555 HA C1 NAG . I NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale18 I ND2 ASN 253 I ASN 269 1_555 GA C1 NAG . I NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale19 J ND2 ASN 169 J ASN 185 1_555 JA C1 NAG . J NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale20 J ND2 ASN 253 J ASN 269 1_555 IA C1 NAG . J NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale21 K ND2 ASN 169 K ASN 185 1_555 LA C1 NAG . K NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale22 K ND2 ASN 253 K ASN 269 1_555 KA C1 NAG . K NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale23 L ND2 ASN 169 L ASN 185 1_555 NA C1 NAG . L NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale24 L ND2 ASN 253 L ASN 269 1_555 MA C1 NAG . L NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale25 M ND2 ASN 169 M ASN 185 1_555 PA C1 NAG . M NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale26 M ND2 ASN 253 M ASN 269 1_555 OA C1 NAG . M NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale27 N ND2 ASN 169 N ASN 185 1_555 RA C1 NAG . N NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale28 N ND2 ASN 253 N ASN 269 1_555 QA C1 NAG . N NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale29 O ND2 ASN 169 O ASN 185 1_555 TA C1 NAG . O NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale30 O ND2 ASN 253 O ASN 269 1_555 SA C1 NAG . O NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale31 P ND2 ASN 169 P ASN 185 1_555 VA C1 NAG . P NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale32 P ND2 ASN 253 P ASN 269 1_555 UA C1 NAG . P NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6SB5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 2 NAG A 1 701 601 NAG NAG . 
R 2 NAG A 1 702 701 NAG NAG . 
S 2 NAG B 1 701 601 NAG NAG . 
T 2 NAG B 1 702 701 NAG NAG . 
U 2 NAG C 1 701 601 NAG NAG . 
V 2 NAG C 1 702 701 NAG NAG . 
W 2 NAG D 1 701 601 NAG NAG . 
X 2 NAG D 1 702 701 NAG NAG . 
Y 2 NAG E 1 701 601 NAG NAG . 
Z 2 NAG E 1 702 701 NAG NAG . 
AA 2 NAG F 1 701 601 NAG NAG . 
BA 2 NAG F 1 702 701 NAG NAG . 
CA 2 NAG G 1 701 601 NAG NAG . 
DA 2 NAG G 1 702 701 NAG NAG . 
EA 2 NAG H 1 701 601 NAG NAG . 
FA 2 NAG H 1 702 701 NAG NAG . 
GA 2 NAG I 1 701 601 NAG NAG . 
HA 2 NAG I 1 702 701 NAG NAG . 
IA 2 NAG J 1 701 601 NAG NAG . 
JA 2 NAG J 1 702 701 NAG NAG . 
KA 2 NAG K 1 701 601 NAG NAG . 
LA 2 NAG K 1 702 701 NAG NAG . 
MA 2 NAG L 1 701 601 NAG NAG . 
NA 2 NAG L 1 702 701 NAG NAG . 
OA 2 NAG M 1 701 601 NAG NAG . 
PA 2 NAG M 1 702 701 NAG NAG . 
QA 2 NAG N 1 701 601 NAG NAG . 
RA 2 NAG N 1 702 701 NAG NAG . 
SA 2 NAG O 1 701 601 NAG NAG . 
TA 2 NAG O 1 702 701 NAG NAG . 
UA 2 NAG P 1 701 601 NAG NAG . 
VA 2 NAG P 1 702 701 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . EA 2 174.542 218.153 214.508 1 74.56 ? C1 NAG 701 H 1 
HETATM 2 C C2 NAG . . . EA 2 174.672 216.647 214.269 1 74.56 ? C2 NAG 701 H 1 
HETATM 3 C C3 NAG . . . EA 2 176.016 216.319 213.619 1 74.56 ? C3 NAG 701 H 1 
HETATM 4 C C4 NAG . . . EA 2 176.261 217.206 212.406 1 74.56 ? C4 NAG 701 H 1 
HETATM 5 C C5 NAG . . . EA 2 176.069 218.666 212.791 1 74.56 ? C5 NAG 701 H 1 
HETATM 6 C C6 NAG . . . EA 2 176.236 219.625 211.639 1 74.56 ? C6 NAG 701 H 1 
HETATM 7 C C7 NAG . . . EA 2 175.297 216.049 216.582 1 74.56 ? C7 NAG 701 H 1 
HETATM 8 C C8 NAG . . . EA 2 174.955 215.197 217.762 1 74.56 ? C8 NAG 701 H 1 
HETATM 9 N N2 NAG . . . EA 2 174.506 215.906 215.51 1 74.56 ? N2 NAG 701 H 1 
HETATM 10 O O3 NAG . . . EA 2 176.03 214.951 213.234 1 74.56 ? O3 NAG 701 H 1 
HETATM 11 O O4 NAG . . . EA 2 177.59 217.02 211.933 1 74.56 ? O4 NAG 701 H 1 
HETATM 12 O O5 NAG . . . EA 2 174.742 218.846 213.296 1 74.56 ? O5 NAG 701 H 1 
HETATM 13 O O6 NAG . . . EA 2 176.305 220.966 212.103 1 74.56 ? O6 NAG 701 H 1 
HETATM 14 O O7 NAG . . . EA 2 176.246 216.827 216.6 1 74.56 ? O7 NAG 701 H 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    74 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           14 
#