data_6SBJ # _model_server_result.job_id peIYIYkuJeu1xE3WSJSvew _model_server_result.datetime_utc '2024-10-25 20:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sbj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 6SBJ # _exptl.entry_id 6SBJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.25 _cell.angle_gamma 90 _cell.entry_id 6SBJ _cell.length_a 52.401 _cell.length_b 69.959 _cell.length_c 107.557 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SBJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,I,J,Q,R 1 1 C,D,K,L,M,N,O,P,S,T 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 I N N ? 2 K N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 59 A LYS 21 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc2 A OD1 ASN 60 A ASN 22 1_555 E MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc3 A OE1 GLU 112 A GLU 74 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc4 A OE2 GLU 114 A GLU 76 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? metalc ? metalc5 A OD2 ASP 143 A ASP 105 1_555 F MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc6 E MG MG . A MG 301 1_555 Q O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc7 E MG MG . A MG 301 1_555 B O LYS 59 B LYS 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc8 E MG MG . A MG 301 1_555 B OD1 ASN 60 B ASN 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc9 E MG MG . A MG 301 1_555 R O HOH . B HOH 423 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc10 F MG MG . A MG 302 1_555 Q O HOH . A HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc11 F MG MG . A MG 302 1_555 Q O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc12 F MG MG . A MG 302 1_555 Q O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc13 B OE1 GLU 112 B GLU 74 1_555 I MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc14 B OE2 GLU 114 B GLU 76 1_555 I MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc15 B OD2 ASP 143 B ASP 105 1_555 I MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc16 I MG MG . B MG 301 1_555 R O HOH . B HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc17 I MG MG . B MG 301 1_555 R O HOH . B HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc18 I MG MG . B MG 301 1_555 R O HOH . B HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc19 C O LYS 59 C LYS 21 1_555 N MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc20 C OD1 ASN 60 C ASN 22 1_555 N MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc21 C OE1 GLU 112 C GLU 74 1_555 K MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc22 C OE2 GLU 114 C GLU 76 1_555 K MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc23 C OD2 ASP 143 C ASP 105 1_555 K MG MG . C MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc24 K MG MG . C MG 301 1_555 S O HOH . C HOH 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc25 K MG MG . C MG 301 1_555 S O HOH . C HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc26 S O HOH . C HOH 408 1_555 N MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc27 D O LYS 59 D LYS 21 1_555 N MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc28 D OD1 ASN 60 D ASN 22 1_555 N MG MG . D MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc29 D OE1 GLU 112 D GLU 74 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc30 D OE2 GLU 114 D GLU 76 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc31 D OD2 ASP 143 D ASP 105 1_555 O MG MG . D MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc32 N MG MG . D MG 301 1_555 T O HOH . D HOH 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? metalc ? metalc33 O MG MG . D MG 302 1_555 T O HOH . D HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc34 O MG MG . D MG 302 1_555 T O HOH . D HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SBJ _atom_sites.fract_transf_matrix[1][1] 0.019084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00075 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009305 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 301 1 MG MG . F 2 MG A 1 302 2 MG MG . G 3 CL A 1 303 3 CL CL . H 3 CL A 1 304 4 CL CL . I 2 MG B 1 301 3 MG MG . J 3 CL B 1 302 2 CL CL . K 2 MG C 1 301 5 MG MG . L 3 CL C 1 302 1 CL CL . M 3 CL C 1 303 5 CL CL . N 2 MG D 1 301 4 MG MG . O 2 MG D 1 302 6 MG MG . P 3 CL D 1 303 6 CL CL . Q 4 HOH A 1 401 116 HOH HOH . Q 4 HOH A 2 402 47 HOH HOH . Q 4 HOH A 3 403 5 HOH HOH . Q 4 HOH A 4 404 15 HOH HOH . Q 4 HOH A 5 405 3 HOH HOH . Q 4 HOH A 6 406 115 HOH HOH . Q 4 HOH A 7 407 35 HOH HOH . Q 4 HOH A 8 408 19 HOH HOH . Q 4 HOH A 9 409 18 HOH HOH . Q 4 HOH A 10 410 83 HOH HOH . Q 4 HOH A 11 411 52 HOH HOH . Q 4 HOH A 12 412 80 HOH HOH . Q 4 HOH A 13 413 70 HOH HOH . Q 4 HOH A 14 414 100 HOH HOH . Q 4 HOH A 15 415 2 HOH HOH . Q 4 HOH A 16 416 36 HOH HOH . Q 4 HOH A 17 417 31 HOH HOH . Q 4 HOH A 18 418 28 HOH HOH . Q 4 HOH A 19 419 29 HOH HOH . Q 4 HOH A 20 420 120 HOH HOH . Q 4 HOH A 21 421 25 HOH HOH . Q 4 HOH A 22 422 39 HOH HOH . Q 4 HOH A 23 423 106 HOH HOH . Q 4 HOH A 24 424 59 HOH HOH . Q 4 HOH A 25 425 104 HOH HOH . Q 4 HOH A 26 426 42 HOH HOH . Q 4 HOH A 27 427 24 HOH HOH . Q 4 HOH A 28 428 73 HOH HOH . Q 4 HOH A 29 429 8 HOH HOH . Q 4 HOH A 30 430 107 HOH HOH . Q 4 HOH A 31 431 74 HOH HOH . Q 4 HOH A 32 432 9 HOH HOH . Q 4 HOH A 33 433 63 HOH HOH . Q 4 HOH A 34 434 114 HOH HOH . Q 4 HOH A 35 435 56 HOH HOH . R 4 HOH B 1 401 76 HOH HOH . R 4 HOH B 2 402 81 HOH HOH . R 4 HOH B 3 403 14 HOH HOH . R 4 HOH B 4 404 103 HOH HOH . R 4 HOH B 5 405 1 HOH HOH . R 4 HOH B 6 406 37 HOH HOH . R 4 HOH B 7 407 71 HOH HOH . R 4 HOH B 8 408 46 HOH HOH . R 4 HOH B 9 409 93 HOH HOH . R 4 HOH B 10 410 6 HOH HOH . R 4 HOH B 11 411 7 HOH HOH . R 4 HOH B 12 412 54 HOH HOH . R 4 HOH B 13 413 87 HOH HOH . R 4 HOH B 14 414 88 HOH HOH . R 4 HOH B 15 415 22 HOH HOH . R 4 HOH B 16 416 79 HOH HOH . R 4 HOH B 17 417 97 HOH HOH . R 4 HOH B 18 418 86 HOH HOH . R 4 HOH B 19 419 58 HOH HOH . R 4 HOH B 20 420 10 HOH HOH . R 4 HOH B 21 421 53 HOH HOH . R 4 HOH B 22 422 77 HOH HOH . R 4 HOH B 23 423 4 HOH HOH . R 4 HOH B 24 424 78 HOH HOH . R 4 HOH B 25 425 105 HOH HOH . R 4 HOH B 26 426 51 HOH HOH . R 4 HOH B 27 427 111 HOH HOH . R 4 HOH B 28 428 108 HOH HOH . R 4 HOH B 29 429 13 HOH HOH . R 4 HOH B 30 430 102 HOH HOH . R 4 HOH B 31 431 38 HOH HOH . R 4 HOH B 32 432 66 HOH HOH . R 4 HOH B 33 433 57 HOH HOH . R 4 HOH B 34 434 17 HOH HOH . R 4 HOH B 35 435 68 HOH HOH . R 4 HOH B 36 436 72 HOH HOH . R 4 HOH B 37 437 110 HOH HOH . R 4 HOH B 38 438 44 HOH HOH . R 4 HOH B 39 439 12 HOH HOH . R 4 HOH B 40 440 112 HOH HOH . R 4 HOH B 41 441 50 HOH HOH . R 4 HOH B 42 442 82 HOH HOH . R 4 HOH B 43 443 32 HOH HOH . R 4 HOH B 44 444 60 HOH HOH . R 4 HOH B 45 445 43 HOH HOH . R 4 HOH B 46 446 69 HOH HOH . R 4 HOH B 47 447 67 HOH HOH . S 4 HOH C 1 401 92 HOH HOH . S 4 HOH C 2 402 30 HOH HOH . S 4 HOH C 3 403 34 HOH HOH . S 4 HOH C 4 404 20 HOH HOH . S 4 HOH C 5 405 40 HOH HOH . S 4 HOH C 6 406 49 HOH HOH . S 4 HOH C 7 407 65 HOH HOH . S 4 HOH C 8 408 26 HOH HOH . S 4 HOH C 9 409 99 HOH HOH . S 4 HOH C 10 410 96 HOH HOH . S 4 HOH C 11 411 55 HOH HOH . S 4 HOH C 12 412 45 HOH HOH . T 4 HOH D 1 401 41 HOH HOH . T 4 HOH D 2 402 109 HOH HOH . T 4 HOH D 3 403 98 HOH HOH . T 4 HOH D 4 404 23 HOH HOH . T 4 HOH D 5 405 11 HOH HOH . T 4 HOH D 6 406 85 HOH HOH . T 4 HOH D 7 407 16 HOH HOH . T 4 HOH D 8 408 75 HOH HOH . T 4 HOH D 9 409 90 HOH HOH . T 4 HOH D 10 410 94 HOH HOH . T 4 HOH D 11 411 84 HOH HOH . T 4 HOH D 12 412 117 HOH HOH . T 4 HOH D 13 413 101 HOH HOH . T 4 HOH D 14 414 118 HOH HOH . T 4 HOH D 15 415 91 HOH HOH . T 4 HOH D 16 416 95 HOH HOH . T 4 HOH D 17 417 89 HOH HOH . T 4 HOH D 18 418 48 HOH HOH . T 4 HOH D 19 419 64 HOH HOH . T 4 HOH D 20 420 113 HOH HOH . T 4 HOH D 21 421 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.789 _atom_site.Cartn_y -19.425 _atom_site.Cartn_z -8.506 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #