data_6SBM # _model_server_result.job_id PYPmFoXypWhzd2crZBmRIA _model_server_result.datetime_utc '2024-12-12 20:55:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6SBM # _exptl.entry_id 6SBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.243 _cell.angle_gamma 90 _cell.entry_id 6SBM _cell.length_a 42.348 _cell.length_b 41.603 _cell.length_c 71.968 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 42 A THR 37 1_555 D NA NA . A NA 303 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 A O THR 42 A THR 37 1_555 D NA NA . A NA 303 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc3 A OG SER 78 A SER 73 1_555 E NA NA . A NA 304 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.357 ? metalc ? metalc4 A NE2 HIS 99 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc5 A NE2 HIS 101 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc6 A ND1 HIS 124 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc7 A O VAL 139 A VAL 135 1_555 H HG BE7 . A BE7 307 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.996 ? metalc ? metalc8 A O GLN 141 A GLN 137 1_555 H HG BE7 . A BE7 307 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.938 ? metalc ? metalc9 A O GLN 141 A GLN 137 1_555 H HG BE7 . A BE7 307 1_555 ? B ? ? B ? ? ? ? ? ? ? 3.096 ? metalc ? metalc10 A O GLU 209 A GLU 205 1_555 H HG BE7 . A BE7 307 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.975 ? metalc ? metalc11 A SG CYS 210 A CYS 206 1_555 H HG BE7 . A BE7 307 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.587 ? metalc ? metalc12 A OG SER 224 A SER 220 1_555 E NA NA . A NA 304 1_545 ? B ? ? B ? ? ? ? ? ? ? 2.561 ? metalc ? metalc13 A OE1 GLN 259 A GLN 255 1_555 D NA NA . A NA 303 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc14 B ZN ZN . A ZN 301 1_555 G N L4W . A L4W 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc15 D NA NA . A NA 303 1_555 J O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc16 D NA NA . A NA 303 1_555 J O HOH . A HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? metalc ? metalc17 D NA NA . A NA 303 1_555 J O HOH . A HOH 566 2_546 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc18 D NA NA . A NA 303 1_555 J O HOH . A HOH 594 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.449 ? metalc ? metalc19 E NA NA . A NA 304 1_555 J O HOH . A HOH 418 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.403 ? metalc ? metalc20 E NA NA . A NA 304 1_555 J O HOH . A HOH 441 1_565 ? B ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc21 E NA NA . A NA 304 1_555 J O HOH . A HOH 478 1_565 ? B ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc22 E NA NA . A NA 304 1_555 J O HOH . A HOH 587 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.373 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SBM _atom_sites.fract_transf_matrix[1][1] 0.023614 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005994 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014336 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 DMS A 1 302 1 DMS DMS . D 4 NA A 1 303 1 NA NA . E 4 NA A 1 304 2 NA NA . F 5 L4W A 1 305 1 L4W XXX . G 5 L4W A 1 306 2 L4W XXX . H 6 BE7 A 1 307 1 BE7 BE7 . I 7 FLC A 1 308 1 FLC FLC . J 8 HOH A 1 401 236 HOH HOH . J 8 HOH A 2 402 86 HOH HOH . J 8 HOH A 3 403 49 HOH HOH . J 8 HOH A 4 404 160 HOH HOH . J 8 HOH A 5 405 118 HOH HOH . J 8 HOH A 6 406 68 HOH HOH . J 8 HOH A 7 407 187 HOH HOH . J 8 HOH A 8 408 149 HOH HOH . J 8 HOH A 9 409 224 HOH HOH . J 8 HOH A 10 410 123 HOH HOH . J 8 HOH A 11 411 110 HOH HOH . J 8 HOH A 12 412 101 HOH HOH . J 8 HOH A 13 413 240 HOH HOH . J 8 HOH A 14 414 133 HOH HOH . J 8 HOH A 15 415 3 HOH HOH . J 8 HOH A 16 416 57 HOH HOH . J 8 HOH A 17 417 241 HOH HOH . J 8 HOH A 18 418 244 HOH HOH . J 8 HOH A 19 419 197 HOH HOH . J 8 HOH A 20 420 5 HOH HOH . J 8 HOH A 21 421 174 HOH HOH . J 8 HOH A 22 422 106 HOH HOH . J 8 HOH A 23 423 88 HOH HOH . J 8 HOH A 24 424 161 HOH HOH . J 8 HOH A 25 425 36 HOH HOH . J 8 HOH A 26 426 64 HOH HOH . J 8 HOH A 27 427 239 HOH HOH . J 8 HOH A 28 428 207 HOH HOH . J 8 HOH A 29 429 179 HOH HOH . J 8 HOH A 30 430 74 HOH HOH . J 8 HOH A 31 431 130 HOH HOH . J 8 HOH A 32 432 70 HOH HOH . J 8 HOH A 33 433 151 HOH HOH . J 8 HOH A 34 434 139 HOH HOH . J 8 HOH A 35 435 25 HOH HOH . J 8 HOH A 36 436 92 HOH HOH . J 8 HOH A 37 437 107 HOH HOH . J 8 HOH A 38 438 94 HOH HOH . J 8 HOH A 39 439 126 HOH HOH . J 8 HOH A 40 440 19 HOH HOH . J 8 HOH A 41 441 211 HOH HOH . J 8 HOH A 42 442 21 HOH HOH . J 8 HOH A 43 443 55 HOH HOH . J 8 HOH A 44 444 137 HOH HOH . J 8 HOH A 45 445 217 HOH HOH . J 8 HOH A 46 446 167 HOH HOH . J 8 HOH A 47 447 69 HOH HOH . J 8 HOH A 48 448 44 HOH HOH . J 8 HOH A 49 449 75 HOH HOH . J 8 HOH A 50 450 52 HOH HOH . J 8 HOH A 51 451 85 HOH HOH . J 8 HOH A 52 452 99 HOH HOH . J 8 HOH A 53 453 141 HOH HOH . J 8 HOH A 54 454 157 HOH HOH . J 8 HOH A 55 455 41 HOH HOH . J 8 HOH A 56 456 142 HOH HOH . J 8 HOH A 57 457 58 HOH HOH . J 8 HOH A 58 458 82 HOH HOH . J 8 HOH A 59 459 15 HOH HOH . J 8 HOH A 60 460 135 HOH HOH . J 8 HOH A 61 461 232 HOH HOH . J 8 HOH A 62 462 225 HOH HOH . J 8 HOH A 63 463 53 HOH HOH . J 8 HOH A 64 464 4 HOH HOH . J 8 HOH A 65 465 20 HOH HOH . J 8 HOH A 66 466 104 HOH HOH . J 8 HOH A 67 467 96 HOH HOH . J 8 HOH A 68 468 13 HOH HOH . J 8 HOH A 69 469 7 HOH HOH . J 8 HOH A 70 470 22 HOH HOH . J 8 HOH A 71 471 119 HOH HOH . J 8 HOH A 72 472 205 HOH HOH . J 8 HOH A 73 473 27 HOH HOH . J 8 HOH A 74 474 89 HOH HOH . J 8 HOH A 75 475 196 HOH HOH . J 8 HOH A 76 476 216 HOH HOH . J 8 HOH A 77 477 16 HOH HOH . J 8 HOH A 78 478 67 HOH HOH . J 8 HOH A 79 479 183 HOH HOH . J 8 HOH A 80 480 42 HOH HOH . J 8 HOH A 81 481 2 HOH HOH . J 8 HOH A 82 482 65 HOH HOH . J 8 HOH A 83 483 79 HOH HOH . J 8 HOH A 84 484 172 HOH HOH . J 8 HOH A 85 485 26 HOH HOH . J 8 HOH A 86 486 40 HOH HOH . J 8 HOH A 87 487 12 HOH HOH . J 8 HOH A 88 488 111 HOH HOH . J 8 HOH A 89 489 150 HOH HOH . J 8 HOH A 90 490 6 HOH HOH . J 8 HOH A 91 491 219 HOH HOH . J 8 HOH A 92 492 50 HOH HOH . J 8 HOH A 93 493 1 HOH HOH . J 8 HOH A 94 494 103 HOH HOH . J 8 HOH A 95 495 144 HOH HOH . J 8 HOH A 96 496 71 HOH HOH . J 8 HOH A 97 497 11 HOH HOH . J 8 HOH A 98 498 112 HOH HOH . J 8 HOH A 99 499 102 HOH HOH . J 8 HOH A 100 500 35 HOH HOH . J 8 HOH A 101 501 178 HOH HOH . J 8 HOH A 102 502 43 HOH HOH . J 8 HOH A 103 503 30 HOH HOH . J 8 HOH A 104 504 165 HOH HOH . J 8 HOH A 105 505 34 HOH HOH . J 8 HOH A 106 506 60 HOH HOH . J 8 HOH A 107 507 154 HOH HOH . J 8 HOH A 108 508 213 HOH HOH . J 8 HOH A 109 509 81 HOH HOH . J 8 HOH A 110 510 39 HOH HOH . J 8 HOH A 111 511 166 HOH HOH . J 8 HOH A 112 512 242 HOH HOH . J 8 HOH A 113 513 124 HOH HOH . J 8 HOH A 114 514 215 HOH HOH . J 8 HOH A 115 515 227 HOH HOH . J 8 HOH A 116 516 140 HOH HOH . J 8 HOH A 117 517 170 HOH HOH . J 8 HOH A 118 518 28 HOH HOH . J 8 HOH A 119 519 122 HOH HOH . J 8 HOH A 120 520 9 HOH HOH . J 8 HOH A 121 521 177 HOH HOH . J 8 HOH A 122 522 152 HOH HOH . J 8 HOH A 123 523 203 HOH HOH . J 8 HOH A 124 524 116 HOH HOH . J 8 HOH A 125 525 109 HOH HOH . J 8 HOH A 126 526 176 HOH HOH . J 8 HOH A 127 527 84 HOH HOH . J 8 HOH A 128 528 226 HOH HOH . J 8 HOH A 129 529 198 HOH HOH . J 8 HOH A 130 530 201 HOH HOH . J 8 HOH A 131 531 14 HOH HOH . J 8 HOH A 132 532 221 HOH HOH . J 8 HOH A 133 533 38 HOH HOH . J 8 HOH A 134 534 24 HOH HOH . J 8 HOH A 135 535 132 HOH HOH . J 8 HOH A 136 536 18 HOH HOH . J 8 HOH A 137 537 10 HOH HOH . J 8 HOH A 138 538 195 HOH HOH . J 8 HOH A 139 539 56 HOH HOH . J 8 HOH A 140 540 204 HOH HOH . J 8 HOH A 141 541 37 HOH HOH . J 8 HOH A 142 542 54 HOH HOH . J 8 HOH A 143 543 128 HOH HOH . J 8 HOH A 144 544 100 HOH HOH . J 8 HOH A 145 545 93 HOH HOH . J 8 HOH A 146 546 91 HOH HOH . J 8 HOH A 147 547 63 HOH HOH . J 8 HOH A 148 548 45 HOH HOH . J 8 HOH A 149 549 214 HOH HOH . J 8 HOH A 150 550 32 HOH HOH . J 8 HOH A 151 551 46 HOH HOH . J 8 HOH A 152 552 153 HOH HOH . J 8 HOH A 153 553 72 HOH HOH . J 8 HOH A 154 554 47 HOH HOH . J 8 HOH A 155 555 97 HOH HOH . J 8 HOH A 156 556 138 HOH HOH . J 8 HOH A 157 557 188 HOH HOH . J 8 HOH A 158 558 218 HOH HOH . J 8 HOH A 159 559 131 HOH HOH . J 8 HOH A 160 560 33 HOH HOH . J 8 HOH A 161 561 191 HOH HOH . J 8 HOH A 162 562 73 HOH HOH . J 8 HOH A 163 563 17 HOH HOH . J 8 HOH A 164 564 29 HOH HOH . J 8 HOH A 165 565 31 HOH HOH . J 8 HOH A 166 566 76 HOH HOH . J 8 HOH A 167 567 182 HOH HOH . J 8 HOH A 168 568 159 HOH HOH . J 8 HOH A 169 569 127 HOH HOH . J 8 HOH A 170 570 237 HOH HOH . J 8 HOH A 171 571 51 HOH HOH . J 8 HOH A 172 572 189 HOH HOH . J 8 HOH A 173 573 8 HOH HOH . J 8 HOH A 174 574 121 HOH HOH . J 8 HOH A 175 575 136 HOH HOH . J 8 HOH A 176 576 98 HOH HOH . J 8 HOH A 177 577 243 HOH HOH . J 8 HOH A 178 578 59 HOH HOH . J 8 HOH A 179 579 192 HOH HOH . J 8 HOH A 180 580 83 HOH HOH . J 8 HOH A 181 581 48 HOH HOH . J 8 HOH A 182 582 155 HOH HOH . J 8 HOH A 183 583 120 HOH HOH . J 8 HOH A 184 584 113 HOH HOH . J 8 HOH A 185 585 164 HOH HOH . J 8 HOH A 186 586 147 HOH HOH . J 8 HOH A 187 587 210 HOH HOH . J 8 HOH A 188 588 158 HOH HOH . J 8 HOH A 189 589 78 HOH HOH . J 8 HOH A 190 590 114 HOH HOH . J 8 HOH A 191 591 143 HOH HOH . J 8 HOH A 192 592 23 HOH HOH . J 8 HOH A 193 593 180 HOH HOH . J 8 HOH A 194 594 229 HOH HOH . J 8 HOH A 195 595 125 HOH HOH . J 8 HOH A 196 596 190 HOH HOH . J 8 HOH A 197 597 228 HOH HOH . J 8 HOH A 198 598 163 HOH HOH . J 8 HOH A 199 599 233 HOH HOH . J 8 HOH A 200 600 108 HOH HOH . J 8 HOH A 201 601 66 HOH HOH . J 8 HOH A 202 602 202 HOH HOH . J 8 HOH A 203 603 234 HOH HOH . J 8 HOH A 204 604 238 HOH HOH . J 8 HOH A 205 605 200 HOH HOH . J 8 HOH A 206 606 80 HOH HOH . J 8 HOH A 207 607 171 HOH HOH . J 8 HOH A 208 608 146 HOH HOH . J 8 HOH A 209 609 184 HOH HOH . J 8 HOH A 210 610 105 HOH HOH . J 8 HOH A 211 611 169 HOH HOH . J 8 HOH A 212 612 115 HOH HOH . J 8 HOH A 213 613 222 HOH HOH . J 8 HOH A 214 614 173 HOH HOH . J 8 HOH A 215 615 95 HOH HOH . J 8 HOH A 216 616 185 HOH HOH . J 8 HOH A 217 617 134 HOH HOH . J 8 HOH A 218 618 212 HOH HOH . J 8 HOH A 219 619 175 HOH HOH . J 8 HOH A 220 620 186 HOH HOH . J 8 HOH A 221 621 156 HOH HOH . J 8 HOH A 222 622 231 HOH HOH . J 8 HOH A 223 623 90 HOH HOH . J 8 HOH A 224 624 129 HOH HOH . J 8 HOH A 225 625 62 HOH HOH . J 8 HOH A 226 626 230 HOH HOH . J 8 HOH A 227 627 199 HOH HOH . J 8 HOH A 228 628 181 HOH HOH . J 8 HOH A 229 629 162 HOH HOH . J 8 HOH A 230 630 223 HOH HOH . J 8 HOH A 231 631 194 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -10.378 _atom_site.Cartn_y -5.748 _atom_site.Cartn_z 38.393 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 11.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #