data_6SBT # _model_server_result.job_id WzgKNPcZM-px7g7XXMlZYw _model_server_result.datetime_utc '2024-11-13 00:27:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6SBT # _exptl.entry_id 6SBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 415.325 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[7-imidazol-1-yl-2,3-bis(oxidanylidene)-6-(trifluoromethyl)-4~{H}-quinoxalin-1-yl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SBT _cell.length_a 89.275 _cell.length_b 89.275 _cell.length_c 156.321 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 51.542945 104.214 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H12 F3 N5 O3' _chem_comp.formula_weight 415.325 _chem_comp.id L5H _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[7-imidazol-1-yl-2,3-bis(oxidanylidene)-6-(trifluoromethyl)-4~{H}-quinoxalin-1-yl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 L5H doub 186 n y C12 C13 L5H sing 187 n y C11 C10 L5H sing 188 n y O1 C9 L5H doub 189 n n C18 C19 L5H doub 190 n y C18 N5 L5H sing 191 n y C19 N4 L5H sing 192 n y C13 C14 L5H doub 193 n y C10 C9 L5H sing 194 n n C10 C15 L5H doub 195 n y C9 N3 L5H sing 196 n n N5 C17 L5H doub 197 n y F1 C16 L5H sing 198 n n N4 C5 L5H sing 199 n n N4 C17 L5H sing 200 n y C14 C15 L5H sing 201 n y C4 C5 L5H doub 202 n y C4 C3 L5H sing 203 n y N3 N2 L5H sing 204 n n C5 C6 L5H sing 205 n y C3 N2 L5H sing 206 n n C3 C2 L5H doub 207 n y N2 C8 L5H sing 208 n n C6 C16 L5H sing 209 n n C6 C1 L5H doub 210 n y C16 F3 L5H sing 211 n n C16 F2 L5H sing 212 n n C8 O3 L5H doub 213 n n C8 C7 L5H sing 214 n n C2 C1 L5H sing 215 n y C2 N1 L5H sing 216 n n N1 C7 L5H sing 217 n n C7 O2 L5H doub 218 n n N1 H3 L5H sing 219 n n N3 H4 L5H sing 220 n n C4 H2 L5H sing 221 n n C13 H7 L5H sing 222 n n C15 H9 L5H sing 223 n n C17 H10 L5H sing 224 n n C1 H1 L5H sing 225 n n C11 H5 L5H sing 226 n n C12 H6 L5H sing 227 n n C14 H8 L5H sing 228 n n C18 H11 L5H sing 229 n n C19 H12 L5H sing 230 n n # _atom_sites.entry_id 6SBT _atom_sites.fract_transf_matrix[1][1] 0.011201 _atom_sites.fract_transf_matrix[1][2] 0.006467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 3 L5H A 1 303 900 L5H LIG . E 4 CL A 1 304 4 CL CL . F 4 CL A 1 305 6 CL CL . G 5 GOL A 1 306 1 GOL GOL . H 5 GOL A 1 307 2 GOL GOL . I 6 HOH A 1 401 99 HOH HOH . I 6 HOH A 2 402 86 HOH HOH . I 6 HOH A 3 403 40 HOH HOH . I 6 HOH A 4 404 24 HOH HOH . I 6 HOH A 5 405 41 HOH HOH . I 6 HOH A 6 406 38 HOH HOH . I 6 HOH A 7 407 12 HOH HOH . I 6 HOH A 8 408 42 HOH HOH . I 6 HOH A 9 409 45 HOH HOH . I 6 HOH A 10 410 72 HOH HOH . I 6 HOH A 11 411 20 HOH HOH . I 6 HOH A 12 412 109 HOH HOH . I 6 HOH A 13 413 28 HOH HOH . I 6 HOH A 14 414 22 HOH HOH . I 6 HOH A 15 415 46 HOH HOH . I 6 HOH A 16 416 103 HOH HOH . I 6 HOH A 17 417 81 HOH HOH . I 6 HOH A 18 418 49 HOH HOH . I 6 HOH A 19 419 90 HOH HOH . I 6 HOH A 20 420 3 HOH HOH . I 6 HOH A 21 421 104 HOH HOH . I 6 HOH A 22 422 43 HOH HOH . I 6 HOH A 23 423 26 HOH HOH . I 6 HOH A 24 424 4 HOH HOH . I 6 HOH A 25 425 106 HOH HOH . I 6 HOH A 26 426 75 HOH HOH . I 6 HOH A 27 427 33 HOH HOH . I 6 HOH A 28 428 31 HOH HOH . I 6 HOH A 29 429 32 HOH HOH . I 6 HOH A 30 430 80 HOH HOH . I 6 HOH A 31 431 37 HOH HOH . I 6 HOH A 32 432 61 HOH HOH . I 6 HOH A 33 433 15 HOH HOH . I 6 HOH A 34 434 62 HOH HOH . I 6 HOH A 35 435 55 HOH HOH . I 6 HOH A 36 436 52 HOH HOH . I 6 HOH A 37 437 8 HOH HOH . I 6 HOH A 38 438 71 HOH HOH . I 6 HOH A 39 439 53 HOH HOH . I 6 HOH A 40 440 18 HOH HOH . I 6 HOH A 41 441 78 HOH HOH . I 6 HOH A 42 442 47 HOH HOH . I 6 HOH A 43 443 19 HOH HOH . I 6 HOH A 44 444 17 HOH HOH . I 6 HOH A 45 445 88 HOH HOH . I 6 HOH A 46 446 29 HOH HOH . I 6 HOH A 47 447 63 HOH HOH . I 6 HOH A 48 448 92 HOH HOH . I 6 HOH A 49 449 14 HOH HOH . I 6 HOH A 50 450 87 HOH HOH . I 6 HOH A 51 451 56 HOH HOH . I 6 HOH A 52 452 44 HOH HOH . I 6 HOH A 53 453 105 HOH HOH . I 6 HOH A 54 454 107 HOH HOH . I 6 HOH A 55 455 11 HOH HOH . I 6 HOH A 56 456 108 HOH HOH . I 6 HOH A 57 457 95 HOH HOH . I 6 HOH A 58 458 35 HOH HOH . I 6 HOH A 59 459 23 HOH HOH . I 6 HOH A 60 460 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 L5H . . . D 3 4.785 28.027 37.922 1 24.8 ? N1 L5H 303 A 1 HETATM 2 N N3 L5H . . . D 3 6.226 31.596 36.427 1 40.1 ? N3 L5H 303 A 1 HETATM 3 C C4 L5H . . . D 3 7.917 29.215 36.398 1 34.84 ? C4 L5H 303 A 1 HETATM 4 C C5 L5H . . . D 3 8.692 28.046 36.429 1 35.33 ? C5 L5H 303 A 1 HETATM 5 C C6 L5H . . . D 3 8.161 26.849 36.947 1 28.89 ? C6 L5H 303 A 1 HETATM 6 C C7 L5H . . . D 3 3.938 29.075 37.961 1 21.57 ? C7 L5H 303 A 1 HETATM 7 C C8 L5H . . . D 3 4.458 30.395 37.402 1 26.62 ? C8 L5H 303 A 1 HETATM 8 C C10 L5H . . . D 3 6.777 33.475 35.121 1 54.71 ? C10 L5H 303 A 1 HETATM 9 C C13 L5H . . . D 3 7.995 35.991 35.076 1 56.1 ? C13 L5H 303 A 1 HETATM 10 C C15 L5H . . . D 3 6.669 34.346 36.22 1 54.68 ? C15 L5H 303 A 1 HETATM 11 C C17 L5H . . . D 3 11.203 28.328 36.513 1 45.26 ? C17 L5H 303 A 1 HETATM 12 C C1 L5H . . . D 3 6.851 26.86 37.448 1 29.25 ? C1 L5H 303 A 1 HETATM 13 C C11 L5H . . . D 3 7.513 33.884 33.998 1 57.53 ? C11 L5H 303 A 1 HETATM 14 C C12 L5H . . . D 3 8.116 35.141 33.979 1 56.96 ? C12 L5H 303 A 1 HETATM 15 C C14 L5H . . . D 3 7.273 35.599 36.199 1 54.99 ? C14 L5H 303 A 1 HETATM 16 C C16 L5H . . . D 3 8.985 25.552 36.995 1 28.11 ? C16 L5H 303 A 1 HETATM 17 C C18 L5H . . . D 3 11.706 28.06 34.498 1 37.27 ? C18 L5H 303 A 1 HETATM 18 C C19 L5H . . . D 3 10.331 27.925 34.572 1 38.36 ? C19 L5H 303 A 1 HETATM 19 C C2 L5H . . . D 3 6.089 28.028 37.422 1 24.32 ? C2 L5H 303 A 1 HETATM 20 C C3 L5H . . . D 3 6.604 29.223 36.899 1 30.07 ? C3 L5H 303 A 1 HETATM 21 C C9 L5H . . . D 3 6.116 32.115 35.185 1 52.37 ? C9 L5H 303 A 1 HETATM 22 F F1 L5H . . . D 3 9.37 25.154 35.787 1 31.36 ? F1 L5H 303 A 1 HETATM 23 F F2 L5H . . . D 3 10.075 25.77 37.729 1 26.07 ? F2 L5H 303 A 1 HETATM 24 F F3 L5H . . . D 3 8.32 24.545 37.561 1 29.35 ? F3 L5H 303 A 1 HETATM 25 N N2 L5H . . . D 3 5.738 30.362 36.901 1 33.55 ? N2 L5H 303 A 1 HETATM 26 N N4 L5H . . . D 3 9.995 28.103 35.894 1 44.08 ? N4 L5H 303 A 1 HETATM 27 N N5 L5H . . . D 3 12.228 28.308 35.686 1 41.79 ? N5 L5H 303 A 1 HETATM 28 O O1 L5H . . . D 3 5.565 31.59 34.207 1 59.97 ? O1 L5H 303 A 1 HETATM 29 O O2 L5H . . . D 3 2.796 28.998 38.42 1 23.67 ? O2 L5H 303 A 1 HETATM 30 O O3 L5H . . . D 3 3.705 31.38 37.422 1 26.65 ? O3 L5H 303 A 1 HETATM 31 H H3 L5H . . . D 3 4.447 27.305 38.246 1 29.77 ? H3 L5H 303 A 1 HETATM 32 H H4 L5H . . . D 3 6.639 32.05 37.072 1 48.12 ? H4 L5H 303 A 1 HETATM 33 H H2 L5H . . . D 3 8.295 29.988 36.046 1 41.81 ? H2 L5H 303 A 1 HETATM 34 H H7 L5H . . . D 3 8.398 36.828 35.056 1 67.31 ? H7 L5H 303 A 1 HETATM 35 H H9 L5H . . . D 3 6.193 34.103 36.981 1 65.61 ? H9 L5H 303 A 1 HETATM 36 H H10 L5H . . . D 3 11.233 28.48 37.43 1 54.31 ? H10 L5H 303 A 1 HETATM 37 H H1 L5H . . . D 3 6.477 26.085 37.801 1 35.1 ? H1 L5H 303 A 1 HETATM 38 H H5 L5H . . . D 3 7.604 33.329 33.258 1 69.03 ? H5 L5H 303 A 1 HETATM 39 H H6 L5H . . . D 3 8.599 35.411 33.232 1 68.35 ? H6 L5H 303 A 1 HETATM 40 H H8 L5H . . . D 3 7.194 36.171 36.928 1 65.99 ? H8 L5H 303 A 1 HETATM 41 H H11 L5H . . . D 3 12.225 27.993 33.729 1 44.72 ? H11 L5H 303 A 1 HETATM 42 H H12 L5H . . . D 3 9.683 27.752 33.928 1 46.03 ? H12 L5H 303 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #