data_6SBT # _model_server_result.job_id t6Dt7Zl5kBCZJeD-NsHYTQ _model_server_result.datetime_utc '2024-11-28 22:00:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sbt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 6SBT # _exptl.entry_id 6SBT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SBT _cell.length_a 89.275 _cell.length_b 89.275 _cell.length_c 156.321 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SBT _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 17_555 x-y+1/3,-y+2/3,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 51.542945 104.214 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6SBT _atom_sites.fract_transf_matrix[1][1] 0.011201 _atom_sites.fract_transf_matrix[1][2] 0.006467 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 301 1 SO4 SO4 . C 2 SO4 A 1 302 2 SO4 SO4 . D 3 L5H A 1 303 900 L5H LIG . E 4 CL A 1 304 4 CL CL . F 4 CL A 1 305 6 CL CL . G 5 GOL A 1 306 1 GOL GOL . H 5 GOL A 1 307 2 GOL GOL . I 6 HOH A 1 401 99 HOH HOH . I 6 HOH A 2 402 86 HOH HOH . I 6 HOH A 3 403 40 HOH HOH . I 6 HOH A 4 404 24 HOH HOH . I 6 HOH A 5 405 41 HOH HOH . I 6 HOH A 6 406 38 HOH HOH . I 6 HOH A 7 407 12 HOH HOH . I 6 HOH A 8 408 42 HOH HOH . I 6 HOH A 9 409 45 HOH HOH . I 6 HOH A 10 410 72 HOH HOH . I 6 HOH A 11 411 20 HOH HOH . I 6 HOH A 12 412 109 HOH HOH . I 6 HOH A 13 413 28 HOH HOH . I 6 HOH A 14 414 22 HOH HOH . I 6 HOH A 15 415 46 HOH HOH . I 6 HOH A 16 416 103 HOH HOH . I 6 HOH A 17 417 81 HOH HOH . I 6 HOH A 18 418 49 HOH HOH . I 6 HOH A 19 419 90 HOH HOH . I 6 HOH A 20 420 3 HOH HOH . I 6 HOH A 21 421 104 HOH HOH . I 6 HOH A 22 422 43 HOH HOH . I 6 HOH A 23 423 26 HOH HOH . I 6 HOH A 24 424 4 HOH HOH . I 6 HOH A 25 425 106 HOH HOH . I 6 HOH A 26 426 75 HOH HOH . I 6 HOH A 27 427 33 HOH HOH . I 6 HOH A 28 428 31 HOH HOH . I 6 HOH A 29 429 32 HOH HOH . I 6 HOH A 30 430 80 HOH HOH . I 6 HOH A 31 431 37 HOH HOH . I 6 HOH A 32 432 61 HOH HOH . I 6 HOH A 33 433 15 HOH HOH . I 6 HOH A 34 434 62 HOH HOH . I 6 HOH A 35 435 55 HOH HOH . I 6 HOH A 36 436 52 HOH HOH . I 6 HOH A 37 437 8 HOH HOH . I 6 HOH A 38 438 71 HOH HOH . I 6 HOH A 39 439 53 HOH HOH . I 6 HOH A 40 440 18 HOH HOH . I 6 HOH A 41 441 78 HOH HOH . I 6 HOH A 42 442 47 HOH HOH . I 6 HOH A 43 443 19 HOH HOH . I 6 HOH A 44 444 17 HOH HOH . I 6 HOH A 45 445 88 HOH HOH . I 6 HOH A 46 446 29 HOH HOH . I 6 HOH A 47 447 63 HOH HOH . I 6 HOH A 48 448 92 HOH HOH . I 6 HOH A 49 449 14 HOH HOH . I 6 HOH A 50 450 87 HOH HOH . I 6 HOH A 51 451 56 HOH HOH . I 6 HOH A 52 452 44 HOH HOH . I 6 HOH A 53 453 105 HOH HOH . I 6 HOH A 54 454 107 HOH HOH . I 6 HOH A 55 455 11 HOH HOH . I 6 HOH A 56 456 108 HOH HOH . I 6 HOH A 57 457 95 HOH HOH . I 6 HOH A 58 458 35 HOH HOH . I 6 HOH A 59 459 23 HOH HOH . I 6 HOH A 60 460 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 5 11.232 20.255 27.528 1 91.55 ? C1 GOL 307 A 1 HETATM 2 O O1 GOL . . . H 5 12.361 20.635 26.774 1 90.62 ? O1 GOL 307 A 1 HETATM 3 C C2 GOL . . . H 5 10.606 21.486 28.172 1 93.27 ? C2 GOL 307 A 1 HETATM 4 O O2 GOL . . . H 5 9.202 21.424 28.052 1 92.78 ? O2 GOL 307 A 1 HETATM 5 C C3 GOL . . . H 5 10.987 21.549 29.645 1 93.62 ? C3 GOL 307 A 1 HETATM 6 O O3 GOL . . . H 5 10.549 22.767 30.205 1 93.01 ? O3 GOL 307 A 1 HETATM 7 H H11 GOL . . . H 5 11.528 19.546 28.301 1 109.86 ? H11 GOL 307 A 1 HETATM 8 H H12 GOL . . . H 5 10.503 19.768 26.88 1 109.86 ? H12 GOL 307 A 1 HETATM 9 H HO1 GOL . . . H 5 12.799 19.835 26.416 1 108.75 ? HO1 GOL 307 A 1 HETATM 10 H H2 GOL . . . H 5 10.985 22.378 27.671 1 111.92 ? H2 GOL 307 A 1 HETATM 11 H HO2 GOL . . . H 5 8.87 20.63 28.52 1 111.34 ? HO2 GOL 307 A 1 HETATM 12 H H31 GOL . . . H 5 12.069 21.465 29.748 1 112.35 ? H31 GOL 307 A 1 HETATM 13 H H32 GOL . . . H 5 10.531 20.714 30.178 1 112.35 ? H32 GOL 307 A 1 HETATM 14 H HO3 GOL . . . H 5 10.834 22.817 31.141 1 111.62 ? HO3 GOL 307 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 453 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #