data_6SC2
#
_model_server_result.job_id            C87w6aFvd6E9bgrgyntdpQ 
_model_server_result.datetime_utc      '2025-08-01 15:21:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sc2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":4405}' 
#
_entry.id    6SC2 
#
_exptl.entry_id    6SC2 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SC2 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SC2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetradecameric 
_pdbx_struct_assembly.oligomeric_count      14 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 O N N 
? 8 R N N 
? 8 S N N 
? 8 T N N 
? 8 W N N 
? 8 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 P O3G ATP . A ATP 4402 1_555 Q MG MG . A MG 4403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? 
metalc ? metalc2 P O2B ATP . A ATP 4402 1_555 Q MG MG . A MG 4403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc3 U O3G ATP . B ATP 4402 1_555 V MG MG . B MG 4403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? 
metalc ? metalc4 U O2B ATP . B ATP 4402 1_555 V MG MG . B MG 4403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6SC2 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
O 8 ADP A 1 4401 4308 ADP ADP . 
P 9 ATP A 1 4402 4309 ATP ATP . 
Q 10 MG A 1 4403 4310 MG MG . 
R 8 ADP A 1 4404 4311 ADP ADP . 
S 8 ADP A 1 4405 4312 ADP ADP . 
T 8 ADP B 1 4401 4308 ADP ADP . 
U 9 ATP B 1 4402 4309 ATP ATP . 
V 10 MG B 1 4403 4310 MG MG . 
W 8 ADP B 1 4404 4311 ADP ADP . 
X 8 ADP B 1 4405 4312 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . S 8 -182.057 73.874 585.692 1 69.21 ? PB ADP 4405 A 1 
HETATM 2 O O1B ADP . . . S 8 -183.202 73.068 585.14 1 69.21 ? O1B ADP 4405 A 1 
HETATM 3 O O2B ADP . . . S 8 -180.733 73.166 585.765 1 69.21 ? O2B ADP 4405 A 1 
HETATM 4 O O3B ADP . . . S 8 -182.376 74.637 586.948 1 69.21 ? O3B ADP 4405 A 1 
HETATM 5 P PA ADP . . . S 8 -181.365 74.606 583.087 1 69.21 ? PA ADP 4405 A 1 
HETATM 6 O O1A ADP . . . S 8 -182.527 73.908 582.426 1 69.21 ? O1A ADP 4405 A 1 
HETATM 7 O O2A ADP . . . S 8 -180 73.969 583.117 1 69.21 ? O2A ADP 4405 A 1 
HETATM 8 O O3A ADP . . . S 8 -181.795 75.006 584.584 1 69.21 ? O3A ADP 4405 A 1 
HETATM 9 O O5' ADP . . . S 8 -181.194 76.016 582.346 1 69.21 ? O5' ADP 4405 A 1 
HETATM 10 C C5' ADP . . . S 8 -180.686 76.032 581.02 1 69.21 ? C5' ADP 4405 A 1 
HETATM 11 C C4' ADP . . . S 8 -180.543 77.462 580.525 1 69.21 ? C4' ADP 4405 A 1 
HETATM 12 O O4' ADP . . . S 8 -179.772 78.254 581.427 1 69.21 ? O4' ADP 4405 A 1 
HETATM 13 C C3' ADP . . . S 8 -179.815 77.456 579.2 1 69.21 ? C3' ADP 4405 A 1 
HETATM 14 O O3' ADP . . . S 8 -180.674 77.977 578.186 1 69.21 ? O3' ADP 4405 A 1 
HETATM 15 C C2' ADP . . . S 8 -178.625 78.365 579.388 1 69.21 ? C2' ADP 4405 A 1 
HETATM 16 O O2' ADP . . . S 8 -178.586 79.359 578.369 1 69.21 ? O2' ADP 4405 A 1 
HETATM 17 C C1' ADP . . . S 8 -178.835 79.052 580.713 1 69.21 ? C1' ADP 4405 A 1 
HETATM 18 N N9 ADP . . . S 8 -177.563 79.054 581.449 1 69.21 ? N9 ADP 4405 A 1 
HETATM 19 C C8 ADP . . . S 8 -177.388 78.477 582.641 1 69.21 ? C8 ADP 4405 A 1 
HETATM 20 N N7 ADP . . . S 8 -176.121 78.642 583.079 1 69.21 ? N7 ADP 4405 A 1 
HETATM 21 C C5 ADP . . . S 8 -175.465 79.344 582.148 1 69.21 ? C5 ADP 4405 A 1 
HETATM 22 C C6 ADP . . . S 8 -174.094 79.863 581.992 1 69.21 ? C6 ADP 4405 A 1 
HETATM 23 N N6 ADP . . . S 8 -173.159 79.652 582.942 1 69.21 ? N6 ADP 4405 A 1 
HETATM 24 N N1 ADP . . . S 8 -173.802 80.55 580.874 1 69.21 ? N1 ADP 4405 A 1 
HETATM 25 C C2 ADP . . . S 8 -174.727 80.763 579.926 1 69.21 ? C2 ADP 4405 A 1 
HETATM 26 N N3 ADP . . . S 8 -175.992 80.323 580.007 1 69.21 ? N3 ADP 4405 A 1 
HETATM 27 C C4 ADP . . . S 8 -176.42 79.618 581.074 1 69.21 ? C4 ADP 4405 A 1 
#
_model_server_stats.io_time_ms              124 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    89 
_model_server_stats.query_time_ms           433 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#