data_6SCX # _model_server_result.job_id Vto-CLEWsL81qZIqFy0Hxw _model_server_result.datetime_utc '2024-12-21 14:31:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6scx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":502}' # _entry.id 6SCX # _exptl.entry_id 6SCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SCX _cell.length_a 229.859 _cell.length_b 229.859 _cell.length_c 159.012 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,K,L,P,Q 1 1 C,M,N,O,R 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_554 x-y,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -159.012 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 117 1_555 A SG CYS 277 A CYS 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 67 A CYS 177 1_555 A SG CYS 137 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 B SG CYS 7 B CYS 117 1_555 B SG CYS 277 B CYS 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 67 B CYS 177 1_555 B SG CYS 137 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 7 C CYS 117 1_555 C SG CYS 277 C CYS 387 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 C SG CYS 67 C CYS 177 1_555 C SG CYS 137 C CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A NE2 HIS 141 A HIS 251 1_555 G CD CD . A CD 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc2 A SG CYS 174 A CYS 284 1_555 D CD CD . A CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc3 A SG CYS 177 A CYS 287 1_555 D CD CD . A CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 A SG CYS 192 A CYS 302 1_555 D CD CD . A CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc5 A SG CYS 197 A CYS 307 1_555 D CD CD . A CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 A OE2 GLU 264 A GLU 374 1_555 E CD CD . A CD 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc7 G CD CD . A CD 504 1_555 C NE2 HIS 141 C HIS 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc8 B NE2 HIS 141 B HIS 251 1_555 K CD CD . B CD 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc9 B SG CYS 174 B CYS 284 1_555 I CD CD . B CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 B SG CYS 177 B CYS 287 1_555 I CD CD . B CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc11 B SG CYS 192 B CYS 302 1_555 I CD CD . B CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc12 B SG CYS 197 B CYS 307 1_555 I CD CD . B CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc13 J CD CD . B CD 502 1_555 L O2A MGP . B MGP 504 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.663 ? metalc ? metalc14 C SG CYS 174 C CYS 284 1_555 M CD CD . C CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc15 C SG CYS 177 C CYS 287 1_555 M CD CD . C CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc16 C SG CYS 192 C CYS 302 1_555 M CD CD . C CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc17 C SG CYS 197 C CYS 307 1_555 M CD CD . C CD 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SCX _atom_sites.fract_transf_matrix[1][1] 0.00435 _atom_sites.fract_transf_matrix[1][2] 0.002512 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005024 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 CD A 1 501 501 CD CD . E 2 CD A 1 502 502 CD CD . F 2 CD A 1 503 503 CD CD . G 2 CD A 1 504 504 CD CD . H 3 MGP A 1 505 505 MGP MGP . I 2 CD B 1 501 501 CD CD . J 2 CD B 1 502 502 CD CD . K 2 CD B 1 503 504 CD CD . L 3 MGP B 1 504 505 MGP MGP . M 2 CD C 1 501 501 CD CD . N 2 CD C 1 502 502 CD CD . O 3 MGP C 1 503 505 MGP MGP . P 4 HOH A 1 601 601 HOH HOH . Q 4 HOH B 1 601 601 HOH HOH . R 4 HOH C 1 601 601 HOH HOH . R 4 HOH C 2 602 602 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 2 _atom_site.Cartn_x -40.609 _atom_site.Cartn_y 22.13 _atom_site.Cartn_z -13.754 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 199.67 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 502 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #