data_6SDE # _model_server_result.job_id uNnJ-eMysfocboQkox9Mfg _model_server_result.datetime_utc '2024-10-10 09:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sde # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1401}' # _entry.id 6SDE # _exptl.entry_id 6SDE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.361 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description volitinib _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SDE _cell.length_a 42.13 _cell.length_b 43.36 _cell.length_c 156.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SDE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H15 N9' _chem_comp.formula_weight 345.361 _chem_comp.id V0L _chem_comp.mon_nstd_flag . _chem_comp.name volitinib _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 N1 V0L sing 358 n y C14 C15 V0L doub 359 n y C13 N1 V0L sing 360 n y C13 C8 V0L doub 361 n y C17 C1 V0L sing 362 n n C1 C8 V0L sing 363 n n C1 N3 V0L sing 364 n n N1 C11 V0L sing 365 n y C8 C9 V0L sing 366 n y C15 N2 V0L sing 367 n y N3 N4 V0L sing 368 n y N3 C19 V0L sing 369 n y N4 N5 V0L doub 370 n y C19 N24 V0L doub 371 n y C19 C20 V0L sing 372 n y N5 C20 V0L sing 373 n y N24 C25 V0L sing 374 n y C11 N2 V0L doub 375 n y C11 C10 V0L sing 376 n y C20 N23 V0L doub 377 n y C31 N9 V0L sing 378 n y C31 C27 V0L doub 379 n y C9 C10 V0L doub 380 n y C32 N9 V0L sing 381 n n C25 C27 V0L sing 382 n n C25 C26 V0L doub 383 n y N9 N8 V0L sing 384 n y N23 C26 V0L sing 385 n y C27 C28 V0L sing 386 n y N8 C28 V0L doub 387 n y C1 H1 V0L sing 388 n n C9 H2 V0L sing 389 n n C10 H3 V0L sing 390 n n C13 H4 V0L sing 391 n n C14 H5 V0L sing 392 n n C15 H6 V0L sing 393 n n C17 H7 V0L sing 394 n n C17 H8 V0L sing 395 n n C17 H9 V0L sing 396 n n C26 H10 V0L sing 397 n n C28 H11 V0L sing 398 n n C31 H12 V0L sing 399 n n C32 H13 V0L sing 400 n n C32 H14 V0L sing 401 n n C32 H15 V0L sing 402 n n # _atom_sites.entry_id 6SDE _atom_sites.fract_transf_matrix[1][1] 0.023736 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006393 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V0L A 1 1401 1 V0L INH . C 3 HOH A 1 1501 50 HOH HOH . C 3 HOH A 2 1502 77 HOH HOH . C 3 HOH A 3 1503 74 HOH HOH . C 3 HOH A 4 1504 8 HOH HOH . C 3 HOH A 5 1505 26 HOH HOH . C 3 HOH A 6 1506 75 HOH HOH . C 3 HOH A 7 1507 29 HOH HOH . C 3 HOH A 8 1508 70 HOH HOH . C 3 HOH A 9 1509 67 HOH HOH . C 3 HOH A 10 1510 52 HOH HOH . C 3 HOH A 11 1511 14 HOH HOH . C 3 HOH A 12 1512 54 HOH HOH . C 3 HOH A 13 1513 34 HOH HOH . C 3 HOH A 14 1514 68 HOH HOH . C 3 HOH A 15 1515 3 HOH HOH . C 3 HOH A 16 1516 61 HOH HOH . C 3 HOH A 17 1517 5 HOH HOH . C 3 HOH A 18 1518 16 HOH HOH . C 3 HOH A 19 1519 7 HOH HOH . C 3 HOH A 20 1520 32 HOH HOH . C 3 HOH A 21 1521 47 HOH HOH . C 3 HOH A 22 1522 33 HOH HOH . C 3 HOH A 23 1523 11 HOH HOH . C 3 HOH A 24 1524 15 HOH HOH . C 3 HOH A 25 1525 71 HOH HOH . C 3 HOH A 26 1526 56 HOH HOH . C 3 HOH A 27 1527 38 HOH HOH . C 3 HOH A 28 1528 4 HOH HOH . C 3 HOH A 29 1529 55 HOH HOH . C 3 HOH A 30 1530 60 HOH HOH . C 3 HOH A 31 1531 42 HOH HOH . C 3 HOH A 32 1532 43 HOH HOH . C 3 HOH A 33 1533 36 HOH HOH . C 3 HOH A 34 1534 49 HOH HOH . C 3 HOH A 35 1535 13 HOH HOH . C 3 HOH A 36 1536 25 HOH HOH . C 3 HOH A 37 1537 45 HOH HOH . C 3 HOH A 38 1538 27 HOH HOH . C 3 HOH A 39 1539 46 HOH HOH . C 3 HOH A 40 1540 73 HOH HOH . C 3 HOH A 41 1541 39 HOH HOH . C 3 HOH A 42 1542 69 HOH HOH . C 3 HOH A 43 1543 57 HOH HOH . C 3 HOH A 44 1544 6 HOH HOH . C 3 HOH A 45 1545 21 HOH HOH . C 3 HOH A 46 1546 63 HOH HOH . C 3 HOH A 47 1547 22 HOH HOH . C 3 HOH A 48 1548 31 HOH HOH . C 3 HOH A 49 1549 76 HOH HOH . C 3 HOH A 50 1550 59 HOH HOH . C 3 HOH A 51 1551 2 HOH HOH . C 3 HOH A 52 1552 12 HOH HOH . C 3 HOH A 53 1553 19 HOH HOH . C 3 HOH A 54 1554 53 HOH HOH . C 3 HOH A 55 1555 35 HOH HOH . C 3 HOH A 56 1556 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 V0L . . . B 2 20.538 31.215 54.957 1 59.27 ? C1 V0L 1401 A 1 HETATM 2 C C8 V0L . . . B 2 19.554 31.971 55.807 1 59.13 ? C8 V0L 1401 A 1 HETATM 3 C C9 V0L . . . B 2 18.193 31.492 56.08 1 58.91 ? C9 V0L 1401 A 1 HETATM 4 C C10 V0L . . . B 2 17.318 32.204 56.864 1 58 ? C10 V0L 1401 A 1 HETATM 5 C C11 V0L . . . B 2 17.743 33.438 57.428 1 56.5 ? C11 V0L 1401 A 1 HETATM 6 N N1 V0L . . . B 2 19.035 33.868 57.157 1 53.99 ? N1 V0L 1401 A 1 HETATM 7 C C13 V0L . . . B 2 19.893 33.146 56.371 1 57.11 ? C13 V0L 1401 A 1 HETATM 8 C C14 V0L . . . B 2 19.212 35.071 57.807 1 54.54 ? C14 V0L 1401 A 1 HETATM 9 C C15 V0L . . . B 2 18.04 35.328 58.436 1 56.43 ? C15 V0L 1401 A 1 HETATM 10 N N2 V0L . . . B 2 17.124 34.323 58.206 1 57.97 ? N2 V0L 1401 A 1 HETATM 11 C C17 V0L . . . B 2 20.045 30.926 53.542 1 56.56 ? C17 V0L 1401 A 1 HETATM 12 N N3 V0L . . . B 2 20.905 29.969 55.658 1 61.74 ? N3 V0L 1401 A 1 HETATM 13 C C19 V0L . . . B 2 21.927 29.685 56.507 1 60.81 ? C19 V0L 1401 A 1 HETATM 14 C C20 V0L . . . B 2 21.829 28.337 56.903 1 62.66 ? C20 V0L 1401 A 1 HETATM 15 N N5 V0L . . . B 2 20.697 27.889 56.229 1 62.65 ? N5 V0L 1401 A 1 HETATM 16 N N4 V0L . . . B 2 20.163 28.835 55.516 1 63.54 ? N4 V0L 1401 A 1 HETATM 17 N N23 V0L . . . B 2 22.758 27.863 57.749 1 65.43 ? N23 V0L 1401 A 1 HETATM 18 N N24 V0L . . . B 2 22.884 30.529 56.918 1 61.56 ? N24 V0L 1401 A 1 HETATM 19 C C25 V0L . . . B 2 23.798 30.022 57.76 1 63.8 ? C25 V0L 1401 A 1 HETATM 20 C C26 V0L . . . B 2 23.726 28.692 58.168 1 65.59 ? C26 V0L 1401 A 1 HETATM 21 C C27 V0L . . . B 2 24.865 30.94 58.22 1 65.6 ? C27 V0L 1401 A 1 HETATM 22 C C28 V0L . . . B 2 25.023 32.288 57.862 1 68.86 ? C28 V0L 1401 A 1 HETATM 23 N N8 V0L . . . B 2 26.08 32.839 58.438 1 71.03 ? N8 V0L 1401 A 1 HETATM 24 N N9 V0L . . . B 2 26.634 31.817 59.199 1 70.38 ? N9 V0L 1401 A 1 HETATM 25 C C31 V0L . . . B 2 25.914 30.696 59.072 1 67.84 ? C31 V0L 1401 A 1 HETATM 26 C C32 V0L . . . B 2 27.834 32.021 60.005 1 67.91 ? C32 V0L 1401 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #