data_6SDF # _model_server_result.job_id PXJOZUJfINFWMUJKrb-0Eg _model_server_result.datetime_utc '2025-08-31 12:24:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 6SDF # _exptl.entry_id 6SDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SDF _cell.length_a 97.731 _cell.length_b 97.731 _cell.length_c 51.032 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,L 1 1 B,J,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 J N N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 6SDF _atom_sites.fract_transf_matrix[1][1] 0.010232 _atom_sites.fract_transf_matrix[1][2] 0.005908 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019596 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPD A 1 101 9 MPD MPD . D 2 MPD A 1 102 5 MPD MPD . E 2 MPD A 1 103 102 MPD MPD . F 2 MPD A 1 104 202 MPD MPD . G 2 MPD A 1 105 8 MPD MPD . H 3 CL A 1 106 1 CL CL . I 3 CL A 1 107 1 CL CL . J 2 MPD B 1 101 7 MPD MPD . K 3 CL B 1 102 1 CL CL . L 4 HOH A 1 201 63 HOH HOH . L 4 HOH A 2 202 1 HOH HOH . L 4 HOH A 3 203 20 HOH HOH . L 4 HOH A 4 204 6 HOH HOH . L 4 HOH A 5 205 2 HOH HOH . L 4 HOH A 6 206 58 HOH HOH . L 4 HOH A 7 207 45 HOH HOH . L 4 HOH A 8 208 75 HOH HOH . L 4 HOH A 9 209 51 HOH HOH . L 4 HOH A 10 210 10 HOH HOH . L 4 HOH A 11 211 26 HOH HOH . L 4 HOH A 12 212 37 HOH HOH . L 4 HOH A 13 213 5 HOH HOH . L 4 HOH A 14 214 65 HOH HOH . L 4 HOH A 15 215 18 HOH HOH . L 4 HOH A 16 216 36 HOH HOH . L 4 HOH A 17 217 55 HOH HOH . L 4 HOH A 18 218 33 HOH HOH . L 4 HOH A 19 219 13 HOH HOH . L 4 HOH A 20 220 59 HOH HOH . L 4 HOH A 21 221 12 HOH HOH . L 4 HOH A 22 222 77 HOH HOH . L 4 HOH A 23 223 73 HOH HOH . L 4 HOH A 24 224 70 HOH HOH . L 4 HOH A 25 225 4 HOH HOH . L 4 HOH A 26 226 34 HOH HOH . L 4 HOH A 27 227 40 HOH HOH . L 4 HOH A 28 228 16 HOH HOH . L 4 HOH A 29 229 31 HOH HOH . L 4 HOH A 30 230 44 HOH HOH . L 4 HOH A 31 231 29 HOH HOH . L 4 HOH A 32 232 27 HOH HOH . L 4 HOH A 33 233 78 HOH HOH . L 4 HOH A 34 234 68 HOH HOH . L 4 HOH A 35 235 74 HOH HOH . L 4 HOH A 36 236 71 HOH HOH . L 4 HOH A 37 237 46 HOH HOH . L 4 HOH A 38 238 64 HOH HOH . L 4 HOH A 39 239 30 HOH HOH . L 4 HOH A 40 240 23 HOH HOH . L 4 HOH A 41 241 39 HOH HOH . L 4 HOH A 42 242 11 HOH HOH . L 4 HOH A 43 243 38 HOH HOH . L 4 HOH A 44 244 61 HOH HOH . L 4 HOH A 45 245 24 HOH HOH . L 4 HOH A 46 246 49 HOH HOH . L 4 HOH A 47 247 56 HOH HOH . L 4 HOH A 48 248 47 HOH HOH . L 4 HOH A 49 249 22 HOH HOH . M 4 HOH B 1 201 67 HOH HOH . M 4 HOH B 2 202 53 HOH HOH . M 4 HOH B 3 203 7 HOH HOH . M 4 HOH B 4 204 28 HOH HOH . M 4 HOH B 5 205 3 HOH HOH . M 4 HOH B 6 206 35 HOH HOH . M 4 HOH B 7 207 17 HOH HOH . M 4 HOH B 8 208 9 HOH HOH . M 4 HOH B 9 209 41 HOH HOH . M 4 HOH B 10 210 8 HOH HOH . M 4 HOH B 11 211 79 HOH HOH . M 4 HOH B 12 212 69 HOH HOH . M 4 HOH B 13 213 32 HOH HOH . M 4 HOH B 14 214 42 HOH HOH . M 4 HOH B 15 215 19 HOH HOH . M 4 HOH B 16 216 52 HOH HOH . M 4 HOH B 17 217 43 HOH HOH . M 4 HOH B 18 218 62 HOH HOH . M 4 HOH B 19 219 15 HOH HOH . M 4 HOH B 20 220 21 HOH HOH . M 4 HOH B 21 221 14 HOH HOH . M 4 HOH B 22 222 66 HOH HOH . M 4 HOH B 23 223 60 HOH HOH . M 4 HOH B 24 224 54 HOH HOH . M 4 HOH B 25 225 25 HOH HOH . M 4 HOH B 26 226 57 HOH HOH . M 4 HOH B 27 227 50 HOH HOH . M 4 HOH B 28 228 48 HOH HOH . M 4 HOH B 29 229 76 HOH HOH . M 4 HOH B 30 230 80 HOH HOH . M 4 HOH B 31 231 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . D 2 26.328 -36.738 19.481 1 36.85 ? C1 MPD 102 A 1 HETATM 2 C C2 MPD . . . D 2 26.045 -35.291 19.108 0 34.4 ? C2 MPD 102 A 1 HETATM 3 O O2 MPD . . . D 2 27.179 -34.826 18.346 1 35.48 ? O2 MPD 102 A 1 HETATM 4 C CM MPD . . . D 2 24.79 -35.195 18.25 1 33.06 ? CM MPD 102 A 1 HETATM 5 C C3 MPD . . . D 2 25.925 -34.418 20.353 1 43.41 ? C3 MPD 102 A 1 HETATM 6 C C4 MPD . . . D 2 26.661 -33.089 20.191 0 28.87 ? C4 MPD 102 A 1 HETATM 7 O O4 MPD . . . D 2 25.806 -32.024 20.55 1 29.7 ? O4 MPD 102 A 1 HETATM 8 C C5 MPD . . . D 2 27.92 -33.024 21.047 1 27.42 ? C5 MPD 102 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 69 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 536 _model_server_stats.encode_time_ms 52 _model_server_stats.element_count 8 #