data_6SDH # _model_server_result.job_id LDfrOAs3oRVRnn_fpfJ-xg _model_server_result.datetime_utc '2025-01-10 21:14:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sdh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6SDH # _exptl.entry_id 6SDH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.156 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4-CARBOXYPHENYL)(CHLORO)MERCURY _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.106 _cell.angle_gamma 90 _cell.entry_id 6SDH _cell.length_a 42.298 _cell.length_b 41.739 _cell.length_c 72.337 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SDH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc2 A NE2 HIS 101 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 A ND1 HIS 124 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc4 A O VAL 139 A VAL 135 1_555 E HG HG . A HG 304 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.141 ? metalc ? metalc5 A O GLN 141 A GLN 137 1_555 D HG BE7 . A BE7 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.944 ? metalc ? metalc6 A O GLU 209 A GLU 205 1_555 D HG BE7 . A BE7 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.114 ? metalc ? metalc7 A SG CYS 210 A CYS 206 1_555 D HG BE7 . A BE7 303 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.343 ? metalc ? metalc8 A SG CYS 210 A CYS 206 1_555 E HG HG . A HG 304 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.707 ? metalc ? metalc9 B ZN ZN . A ZN 301 1_555 F N13 0VV . A 0VV 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc10 D HG BE7 . A BE7 303 1_555 G O HOH . A HOH 485 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.964 ? metalc ? metalc11 E HG HG . A HG 304 1_555 G O HOH . A HOH 485 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.541 ? # _chem_comp.formula 'C7 H5 Cl Hg O2' _chem_comp.formula_weight 357.156 _chem_comp.id BE7 _chem_comp.mon_nstd_flag . _chem_comp.name (4-CARBOXYPHENYL)(CHLORO)MERCURY _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'P-CHLOROMERCURIBENZOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BE7 sing 96 n n C1 O9 BE7 sing 97 n n C1 O8 BE7 doub 98 n n C2 C3 BE7 sing 99 n y C2 C7 BE7 doub 100 n y C3 C4 BE7 doub 101 n y C3 H3 BE7 sing 102 n n C4 C5 BE7 sing 103 n y C4 H4 BE7 sing 104 n n C5 C6 BE7 doub 105 n y C5 HG BE7 sing 106 n n C6 C7 BE7 sing 107 n y C6 H6 BE7 sing 108 n n O9 HO9 BE7 sing 109 n n C7 H7 BE7 sing 110 n n HG CL1 BE7 sing 111 n n # _atom_sites.entry_id 6SDH _atom_sites.fract_transf_matrix[1][1] 0.023642 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005941 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 DMS A 1 302 1 DMS DMS . D 4 BE7 A 1 303 1 BE7 BE7 . E 5 HG A 1 304 1 HG HG . F 6 0VV A 1 305 1 0VV 0VV . G 7 HOH A 1 401 163 HOH HOH . G 7 HOH A 2 402 71 HOH HOH . G 7 HOH A 3 403 199 HOH HOH . G 7 HOH A 4 404 164 HOH HOH . G 7 HOH A 5 405 80 HOH HOH . G 7 HOH A 6 406 170 HOH HOH . G 7 HOH A 7 407 20 HOH HOH . G 7 HOH A 8 408 83 HOH HOH . G 7 HOH A 9 409 100 HOH HOH . G 7 HOH A 10 410 99 HOH HOH . G 7 HOH A 11 411 28 HOH HOH . G 7 HOH A 12 412 144 HOH HOH . G 7 HOH A 13 413 48 HOH HOH . G 7 HOH A 14 414 82 HOH HOH . G 7 HOH A 15 415 176 HOH HOH . G 7 HOH A 16 416 31 HOH HOH . G 7 HOH A 17 417 95 HOH HOH . G 7 HOH A 18 418 112 HOH HOH . G 7 HOH A 19 419 46 HOH HOH . G 7 HOH A 20 420 124 HOH HOH . G 7 HOH A 21 421 2 HOH HOH . G 7 HOH A 22 422 43 HOH HOH . G 7 HOH A 23 423 126 HOH HOH . G 7 HOH A 24 424 85 HOH HOH . G 7 HOH A 25 425 104 HOH HOH . G 7 HOH A 26 426 131 HOH HOH . G 7 HOH A 27 427 55 HOH HOH . G 7 HOH A 28 428 26 HOH HOH . G 7 HOH A 29 429 185 HOH HOH . G 7 HOH A 30 430 197 HOH HOH . G 7 HOH A 31 431 37 HOH HOH . G 7 HOH A 32 432 21 HOH HOH . G 7 HOH A 33 433 62 HOH HOH . G 7 HOH A 34 434 135 HOH HOH . G 7 HOH A 35 435 70 HOH HOH . G 7 HOH A 36 436 65 HOH HOH . G 7 HOH A 37 437 174 HOH HOH . G 7 HOH A 38 438 118 HOH HOH . G 7 HOH A 39 439 149 HOH HOH . G 7 HOH A 40 440 9 HOH HOH . G 7 HOH A 41 441 196 HOH HOH . G 7 HOH A 42 442 181 HOH HOH . G 7 HOH A 43 443 165 HOH HOH . G 7 HOH A 44 444 14 HOH HOH . G 7 HOH A 45 445 122 HOH HOH . G 7 HOH A 46 446 23 HOH HOH . G 7 HOH A 47 447 66 HOH HOH . G 7 HOH A 48 448 86 HOH HOH . G 7 HOH A 49 449 12 HOH HOH . G 7 HOH A 50 450 119 HOH HOH . G 7 HOH A 51 451 19 HOH HOH . G 7 HOH A 52 452 114 HOH HOH . G 7 HOH A 53 453 138 HOH HOH . G 7 HOH A 54 454 116 HOH HOH . G 7 HOH A 55 455 29 HOH HOH . G 7 HOH A 56 456 117 HOH HOH . G 7 HOH A 57 457 13 HOH HOH . G 7 HOH A 58 458 168 HOH HOH . G 7 HOH A 59 459 184 HOH HOH . G 7 HOH A 60 460 73 HOH HOH . G 7 HOH A 61 461 102 HOH HOH . G 7 HOH A 62 462 4 HOH HOH . G 7 HOH A 63 463 67 HOH HOH . G 7 HOH A 64 464 93 HOH HOH . G 7 HOH A 65 465 5 HOH HOH . G 7 HOH A 66 466 198 HOH HOH . G 7 HOH A 67 467 34 HOH HOH . G 7 HOH A 68 468 45 HOH HOH . G 7 HOH A 69 469 173 HOH HOH . G 7 HOH A 70 470 79 HOH HOH . G 7 HOH A 71 471 106 HOH HOH . G 7 HOH A 72 472 6 HOH HOH . G 7 HOH A 73 473 22 HOH HOH . G 7 HOH A 74 474 8 HOH HOH . G 7 HOH A 75 475 33 HOH HOH . G 7 HOH A 76 476 190 HOH HOH . G 7 HOH A 77 477 128 HOH HOH . G 7 HOH A 78 478 175 HOH HOH . G 7 HOH A 79 479 195 HOH HOH . G 7 HOH A 80 480 56 HOH HOH . G 7 HOH A 81 481 10 HOH HOH . G 7 HOH A 82 482 49 HOH HOH . G 7 HOH A 83 483 38 HOH HOH . G 7 HOH A 84 484 41 HOH HOH . G 7 HOH A 85 485 110 HOH HOH . G 7 HOH A 86 486 63 HOH HOH . G 7 HOH A 87 487 142 HOH HOH . G 7 HOH A 88 488 77 HOH HOH . G 7 HOH A 89 489 202 HOH HOH . G 7 HOH A 90 490 15 HOH HOH . G 7 HOH A 91 491 27 HOH HOH . G 7 HOH A 92 492 139 HOH HOH . G 7 HOH A 93 493 69 HOH HOH . G 7 HOH A 94 494 52 HOH HOH . G 7 HOH A 95 495 32 HOH HOH . G 7 HOH A 96 496 57 HOH HOH . G 7 HOH A 97 497 40 HOH HOH . G 7 HOH A 98 498 17 HOH HOH . G 7 HOH A 99 499 177 HOH HOH . G 7 HOH A 100 500 61 HOH HOH . G 7 HOH A 101 501 47 HOH HOH . G 7 HOH A 102 502 152 HOH HOH . G 7 HOH A 103 503 191 HOH HOH . G 7 HOH A 104 504 35 HOH HOH . G 7 HOH A 105 505 59 HOH HOH . G 7 HOH A 106 506 211 HOH HOH . G 7 HOH A 107 507 60 HOH HOH . G 7 HOH A 108 508 148 HOH HOH . G 7 HOH A 109 509 136 HOH HOH . G 7 HOH A 110 510 193 HOH HOH . G 7 HOH A 111 511 53 HOH HOH . G 7 HOH A 112 512 7 HOH HOH . G 7 HOH A 113 513 103 HOH HOH . G 7 HOH A 114 514 25 HOH HOH . G 7 HOH A 115 515 44 HOH HOH . G 7 HOH A 116 516 115 HOH HOH . G 7 HOH A 117 517 54 HOH HOH . G 7 HOH A 118 518 210 HOH HOH . G 7 HOH A 119 519 194 HOH HOH . G 7 HOH A 120 520 207 HOH HOH . G 7 HOH A 121 521 64 HOH HOH . G 7 HOH A 122 522 88 HOH HOH . G 7 HOH A 123 523 172 HOH HOH . G 7 HOH A 124 524 209 HOH HOH . G 7 HOH A 125 525 36 HOH HOH . G 7 HOH A 126 526 3 HOH HOH . G 7 HOH A 127 527 39 HOH HOH . G 7 HOH A 128 528 127 HOH HOH . G 7 HOH A 129 529 30 HOH HOH . G 7 HOH A 130 530 16 HOH HOH . G 7 HOH A 131 531 169 HOH HOH . G 7 HOH A 132 532 89 HOH HOH . G 7 HOH A 133 533 145 HOH HOH . G 7 HOH A 134 534 140 HOH HOH . G 7 HOH A 135 535 58 HOH HOH . G 7 HOH A 136 536 204 HOH HOH . G 7 HOH A 137 537 162 HOH HOH . G 7 HOH A 138 538 183 HOH HOH . G 7 HOH A 139 539 200 HOH HOH . G 7 HOH A 140 540 154 HOH HOH . G 7 HOH A 141 541 120 HOH HOH . G 7 HOH A 142 542 178 HOH HOH . G 7 HOH A 143 543 166 HOH HOH . G 7 HOH A 144 544 108 HOH HOH . G 7 HOH A 145 545 208 HOH HOH . G 7 HOH A 146 546 129 HOH HOH . G 7 HOH A 147 547 167 HOH HOH . G 7 HOH A 148 548 121 HOH HOH . G 7 HOH A 149 549 212 HOH HOH . G 7 HOH A 150 550 179 HOH HOH . G 7 HOH A 151 551 84 HOH HOH . G 7 HOH A 152 552 186 HOH HOH . G 7 HOH A 153 553 132 HOH HOH . G 7 HOH A 154 554 101 HOH HOH . G 7 HOH A 155 555 151 HOH HOH . G 7 HOH A 156 556 160 HOH HOH . G 7 HOH A 157 557 201 HOH HOH . G 7 HOH A 158 558 187 HOH HOH . G 7 HOH A 159 559 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BE7 . A . D 4 3.832 12.615 100.478 0.62 13.42 ? C1 BE7 303 A 1 HETATM 2 C C2 BE7 . A . D 4 3.299 12.137 99.161 0.62 12.63 ? C2 BE7 303 A 1 HETATM 3 C C3 BE7 . A . D 4 2.869 10.823 99.038 0.62 12.21 ? C3 BE7 303 A 1 HETATM 4 C C4 BE7 . A . D 4 2.37 10.374 97.831 0.62 11.58 ? C4 BE7 303 A 1 HETATM 5 C C5 BE7 . A . D 4 2.315 11.27 96.794 0.62 11.46 ? C5 BE7 303 A 1 HETATM 6 C C6 BE7 . A . D 4 2.732 12.576 96.875 0.62 13.12 ? C6 BE7 303 A 1 HETATM 7 O O9 BE7 . A . D 4 3.809 11.85 101.454 0.62 15.86 ? O9 BE7 303 A 1 HETATM 8 O O8 BE7 . A . D 4 4.278 13.764 100.561 0.62 14.47 ? O8 BE7 303 A 1 HETATM 9 C C7 BE7 . A . D 4 3.227 13.012 98.088 0.62 12.74 ? C7 BE7 303 A 1 HETATM 10 HG HG BE7 . A . D 4 1.497 10.529 94.85 0.62 10.93 ? HG BE7 303 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #