data_6SDJ # _model_server_result.job_id q5XuP4TLD6Q0NAEb4vAv1Q _model_server_result.datetime_utc '2024-10-19 16:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sdj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 6SDJ # _exptl.entry_id 6SDJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.187 _cell.angle_gamma 90 _cell.entry_id 6SDJ _cell.length_a 42.359 _cell.length_b 41.103 _cell.length_c 72.174 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SDJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASN 67 A ASN 62 1_555 E HG HG . A HG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc2 A ND1 HIS 69 A HIS 64 1_555 E HG HG . A HG 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc3 A NE2 HIS 99 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc4 A NE2 HIS 101 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc5 A ND1 HIS 124 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc6 A O VAL 139 A VAL 135 1_555 D HG HG . A HG 303 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.09 ? metalc ? metalc7 A O GLN 141 A GLN 137 1_555 G HG BE7 . A BE7 306 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.836 ? metalc ? metalc8 A O GLU 209 A GLU 205 1_555 G HG BE7 . A BE7 306 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.065 ? metalc ? metalc9 A SG CYS 210 A CYS 206 1_555 D HG HG . A HG 303 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.473 ? metalc ? metalc10 A SG CYS 210 A CYS 206 1_555 G HG BE7 . A BE7 306 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.408 ? metalc ? metalc11 A OE2 GLU 243 A GLU 239 1_555 F HG BE7 . A BE7 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? metalc ? metalc12 B ZN ZN . A ZN 301 1_555 C N J3K . A J3K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc13 E HG HG . A HG 304 1_555 H O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc14 E HG HG . A HG 304 1_555 H O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc15 F HG BE7 . A BE7 305 1_555 H O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.949 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SDJ _atom_sites.fract_transf_matrix[1][1] 0.023608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005968 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024329 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 2 ZN ZN . C 3 J3K A 1 302 1 J3K APR . D 4 HG A 1 303 1 HG HG . E 4 HG A 1 304 2 HG HG . F 5 BE7 A 1 305 1 BE7 BE7 . G 5 BE7 A 1 306 2 BE7 BE7 . H 6 HOH A 1 401 205 HOH HOH . H 6 HOH A 2 402 74 HOH HOH . H 6 HOH A 3 403 104 HOH HOH . H 6 HOH A 4 404 38 HOH HOH . H 6 HOH A 5 405 136 HOH HOH . H 6 HOH A 6 406 88 HOH HOH . H 6 HOH A 7 407 6 HOH HOH . H 6 HOH A 8 408 52 HOH HOH . H 6 HOH A 9 409 20 HOH HOH . H 6 HOH A 10 410 41 HOH HOH . H 6 HOH A 11 411 110 HOH HOH . H 6 HOH A 12 412 159 HOH HOH . H 6 HOH A 13 413 164 HOH HOH . H 6 HOH A 14 414 35 HOH HOH . H 6 HOH A 15 415 180 HOH HOH . H 6 HOH A 16 416 49 HOH HOH . H 6 HOH A 17 417 204 HOH HOH . H 6 HOH A 18 418 137 HOH HOH . H 6 HOH A 19 419 19 HOH HOH . H 6 HOH A 20 420 75 HOH HOH . H 6 HOH A 21 421 103 HOH HOH . H 6 HOH A 22 422 85 HOH HOH . H 6 HOH A 23 423 18 HOH HOH . H 6 HOH A 24 424 122 HOH HOH . H 6 HOH A 25 425 36 HOH HOH . H 6 HOH A 26 426 61 HOH HOH . H 6 HOH A 27 427 171 HOH HOH . H 6 HOH A 28 428 134 HOH HOH . H 6 HOH A 29 429 168 HOH HOH . H 6 HOH A 30 430 68 HOH HOH . H 6 HOH A 31 431 56 HOH HOH . H 6 HOH A 32 432 22 HOH HOH . H 6 HOH A 33 433 14 HOH HOH . H 6 HOH A 34 434 11 HOH HOH . H 6 HOH A 35 435 45 HOH HOH . H 6 HOH A 36 436 76 HOH HOH . H 6 HOH A 37 437 106 HOH HOH . H 6 HOH A 38 438 154 HOH HOH . H 6 HOH A 39 439 43 HOH HOH . H 6 HOH A 40 440 57 HOH HOH . H 6 HOH A 41 441 184 HOH HOH . H 6 HOH A 42 442 169 HOH HOH . H 6 HOH A 43 443 32 HOH HOH . H 6 HOH A 44 444 91 HOH HOH . H 6 HOH A 45 445 58 HOH HOH . H 6 HOH A 46 446 146 HOH HOH . H 6 HOH A 47 447 125 HOH HOH . H 6 HOH A 48 448 33 HOH HOH . H 6 HOH A 49 449 7 HOH HOH . H 6 HOH A 50 450 82 HOH HOH . H 6 HOH A 51 451 3 HOH HOH . H 6 HOH A 52 452 108 HOH HOH . H 6 HOH A 53 453 99 HOH HOH . H 6 HOH A 54 454 151 HOH HOH . H 6 HOH A 55 455 129 HOH HOH . H 6 HOH A 56 456 113 HOH HOH . H 6 HOH A 57 457 196 HOH HOH . H 6 HOH A 58 458 24 HOH HOH . H 6 HOH A 59 459 10 HOH HOH . H 6 HOH A 60 460 26 HOH HOH . H 6 HOH A 61 461 73 HOH HOH . H 6 HOH A 62 462 170 HOH HOH . H 6 HOH A 63 463 87 HOH HOH . H 6 HOH A 64 464 29 HOH HOH . H 6 HOH A 65 465 70 HOH HOH . H 6 HOH A 66 466 8 HOH HOH . H 6 HOH A 67 467 94 HOH HOH . H 6 HOH A 68 468 71 HOH HOH . H 6 HOH A 69 469 1 HOH HOH . H 6 HOH A 70 470 133 HOH HOH . H 6 HOH A 71 471 23 HOH HOH . H 6 HOH A 72 472 27 HOH HOH . H 6 HOH A 73 473 39 HOH HOH . H 6 HOH A 74 474 102 HOH HOH . H 6 HOH A 75 475 165 HOH HOH . H 6 HOH A 76 476 17 HOH HOH . H 6 HOH A 77 477 95 HOH HOH . H 6 HOH A 78 478 59 HOH HOH . H 6 HOH A 79 479 72 HOH HOH . H 6 HOH A 80 480 115 HOH HOH . H 6 HOH A 81 481 120 HOH HOH . H 6 HOH A 82 482 109 HOH HOH . H 6 HOH A 83 483 92 HOH HOH . H 6 HOH A 84 484 155 HOH HOH . H 6 HOH A 85 485 5 HOH HOH . H 6 HOH A 86 486 15 HOH HOH . H 6 HOH A 87 487 90 HOH HOH . H 6 HOH A 88 488 46 HOH HOH . H 6 HOH A 89 489 117 HOH HOH . H 6 HOH A 90 490 193 HOH HOH . H 6 HOH A 91 491 28 HOH HOH . H 6 HOH A 92 492 34 HOH HOH . H 6 HOH A 93 493 181 HOH HOH . H 6 HOH A 94 494 177 HOH HOH . H 6 HOH A 95 495 185 HOH HOH . H 6 HOH A 96 496 96 HOH HOH . H 6 HOH A 97 497 153 HOH HOH . H 6 HOH A 98 498 116 HOH HOH . H 6 HOH A 99 499 51 HOH HOH . H 6 HOH A 100 500 62 HOH HOH . H 6 HOH A 101 501 100 HOH HOH . H 6 HOH A 102 502 44 HOH HOH . H 6 HOH A 103 503 179 HOH HOH . H 6 HOH A 104 504 42 HOH HOH . H 6 HOH A 105 505 9 HOH HOH . H 6 HOH A 106 506 176 HOH HOH . H 6 HOH A 107 507 55 HOH HOH . H 6 HOH A 108 508 130 HOH HOH . H 6 HOH A 109 509 121 HOH HOH . H 6 HOH A 110 510 126 HOH HOH . H 6 HOH A 111 511 84 HOH HOH . H 6 HOH A 112 512 162 HOH HOH . H 6 HOH A 113 513 2 HOH HOH . H 6 HOH A 114 514 47 HOH HOH . H 6 HOH A 115 515 167 HOH HOH . H 6 HOH A 116 516 21 HOH HOH . H 6 HOH A 117 517 31 HOH HOH . H 6 HOH A 118 518 54 HOH HOH . H 6 HOH A 119 519 107 HOH HOH . H 6 HOH A 120 520 69 HOH HOH . H 6 HOH A 121 521 80 HOH HOH . H 6 HOH A 122 522 140 HOH HOH . H 6 HOH A 123 523 163 HOH HOH . H 6 HOH A 124 524 123 HOH HOH . H 6 HOH A 125 525 16 HOH HOH . H 6 HOH A 126 526 30 HOH HOH . H 6 HOH A 127 527 200 HOH HOH . H 6 HOH A 128 528 64 HOH HOH . H 6 HOH A 129 529 201 HOH HOH . H 6 HOH A 130 530 98 HOH HOH . H 6 HOH A 131 531 183 HOH HOH . H 6 HOH A 132 532 160 HOH HOH . H 6 HOH A 133 533 131 HOH HOH . H 6 HOH A 134 534 77 HOH HOH . H 6 HOH A 135 535 158 HOH HOH . H 6 HOH A 136 536 156 HOH HOH . H 6 HOH A 137 537 66 HOH HOH . H 6 HOH A 138 538 166 HOH HOH . H 6 HOH A 139 539 25 HOH HOH . H 6 HOH A 140 540 148 HOH HOH . H 6 HOH A 141 541 192 HOH HOH . H 6 HOH A 142 542 157 HOH HOH . H 6 HOH A 143 543 138 HOH HOH . H 6 HOH A 144 544 147 HOH HOH . H 6 HOH A 145 545 89 HOH HOH . H 6 HOH A 146 546 40 HOH HOH . H 6 HOH A 147 547 127 HOH HOH . H 6 HOH A 148 548 135 HOH HOH . H 6 HOH A 149 549 124 HOH HOH . H 6 HOH A 150 550 150 HOH HOH . H 6 HOH A 151 551 53 HOH HOH . H 6 HOH A 152 552 60 HOH HOH . H 6 HOH A 153 553 67 HOH HOH . H 6 HOH A 154 554 182 HOH HOH . H 6 HOH A 155 555 189 HOH HOH . H 6 HOH A 156 556 198 HOH HOH . H 6 HOH A 157 557 4 HOH HOH . H 6 HOH A 158 558 187 HOH HOH . H 6 HOH A 159 559 145 HOH HOH . H 6 HOH A 160 560 79 HOH HOH . H 6 HOH A 161 561 13 HOH HOH . H 6 HOH A 162 562 83 HOH HOH . H 6 HOH A 163 563 111 HOH HOH . H 6 HOH A 164 564 152 HOH HOH . H 6 HOH A 165 565 86 HOH HOH . H 6 HOH A 166 566 191 HOH HOH . H 6 HOH A 167 567 141 HOH HOH . H 6 HOH A 168 568 50 HOH HOH . H 6 HOH A 169 569 202 HOH HOH . H 6 HOH A 170 570 78 HOH HOH . H 6 HOH A 171 571 175 HOH HOH . H 6 HOH A 172 572 112 HOH HOH . H 6 HOH A 173 573 197 HOH HOH . H 6 HOH A 174 574 101 HOH HOH . H 6 HOH A 175 575 199 HOH HOH . H 6 HOH A 176 576 194 HOH HOH . H 6 HOH A 177 577 173 HOH HOH . H 6 HOH A 178 578 174 HOH HOH . H 6 HOH A 179 579 143 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.223 _atom_site.Cartn_y 1.617 _atom_site.Cartn_z 77.222 _atom_site.occupancy 0.32 _atom_site.B_iso_or_equiv 10.76 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #