data_6SDP # _model_server_result.job_id zvfZtMB5NlIAR8sIrAWJ7g _model_server_result.datetime_utc '2025-01-10 08:13:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sdp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6SDP # _exptl.entry_id 6SDP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SDP _cell.length_a 57.864 _cell.length_b 57.864 _cell.length_c 397.732 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SDP _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -28.932 -50.111694 -66.288667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 98 A ASP 98 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 A OD2 ASP 98 A ASP 98 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 A OD2 ASP 102 A ASP 102 1_555 C ZN ZN . A ZN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc4 C ZN ZN . A ZN 402 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc5 C ZN ZN . A ZN 402 1_555 F O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc6 C ZN ZN . A ZN 402 1_555 F O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc7 D ZN ZN . A ZN 403 1_555 F O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc8 D ZN ZN . A ZN 403 1_555 F O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SDP _atom_sites.fract_transf_matrix[1][1] 0.017282 _atom_sites.fract_transf_matrix[1][2] 0.009978 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 ZN A 1 402 1 ZN ZN . D 3 ZN A 1 403 2 ZN ZN . E 4 NPO A 1 404 1 NPO 4NP . F 5 HOH A 1 501 209 HOH HOH . F 5 HOH A 2 502 239 HOH HOH . F 5 HOH A 3 503 230 HOH HOH . F 5 HOH A 4 504 258 HOH HOH . F 5 HOH A 5 505 278 HOH HOH . F 5 HOH A 6 506 251 HOH HOH . F 5 HOH A 7 507 141 HOH HOH . F 5 HOH A 8 508 78 HOH HOH . F 5 HOH A 9 509 33 HOH HOH . F 5 HOH A 10 510 48 HOH HOH . F 5 HOH A 11 511 223 HOH HOH . F 5 HOH A 12 512 269 HOH HOH . F 5 HOH A 13 513 1 HOH HOH . F 5 HOH A 14 514 193 HOH HOH . F 5 HOH A 15 515 132 HOH HOH . F 5 HOH A 16 516 30 HOH HOH . F 5 HOH A 17 517 271 HOH HOH . F 5 HOH A 18 518 172 HOH HOH . F 5 HOH A 19 519 250 HOH HOH . F 5 HOH A 20 520 176 HOH HOH . F 5 HOH A 21 521 42 HOH HOH . F 5 HOH A 22 522 27 HOH HOH . F 5 HOH A 23 523 135 HOH HOH . F 5 HOH A 24 524 184 HOH HOH . F 5 HOH A 25 525 127 HOH HOH . F 5 HOH A 26 526 50 HOH HOH . F 5 HOH A 27 527 205 HOH HOH . F 5 HOH A 28 528 162 HOH HOH . F 5 HOH A 29 529 210 HOH HOH . F 5 HOH A 30 530 169 HOH HOH . F 5 HOH A 31 531 191 HOH HOH . F 5 HOH A 32 532 130 HOH HOH . F 5 HOH A 33 533 14 HOH HOH . F 5 HOH A 34 534 88 HOH HOH . F 5 HOH A 35 535 5 HOH HOH . F 5 HOH A 36 536 22 HOH HOH . F 5 HOH A 37 537 173 HOH HOH . F 5 HOH A 38 538 125 HOH HOH . F 5 HOH A 39 539 25 HOH HOH . F 5 HOH A 40 540 93 HOH HOH . F 5 HOH A 41 541 115 HOH HOH . F 5 HOH A 42 542 37 HOH HOH . F 5 HOH A 43 543 134 HOH HOH . F 5 HOH A 44 544 101 HOH HOH . F 5 HOH A 45 545 19 HOH HOH . F 5 HOH A 46 546 80 HOH HOH . F 5 HOH A 47 547 16 HOH HOH . F 5 HOH A 48 548 28 HOH HOH . F 5 HOH A 49 549 89 HOH HOH . F 5 HOH A 50 550 129 HOH HOH . F 5 HOH A 51 551 29 HOH HOH . F 5 HOH A 52 552 2 HOH HOH . F 5 HOH A 53 553 9 HOH HOH . F 5 HOH A 54 554 253 HOH HOH . F 5 HOH A 55 555 122 HOH HOH . F 5 HOH A 56 556 222 HOH HOH . F 5 HOH A 57 557 70 HOH HOH . F 5 HOH A 58 558 215 HOH HOH . F 5 HOH A 59 559 170 HOH HOH . F 5 HOH A 60 560 207 HOH HOH . F 5 HOH A 61 561 204 HOH HOH . F 5 HOH A 62 562 218 HOH HOH . F 5 HOH A 63 563 111 HOH HOH . F 5 HOH A 64 564 95 HOH HOH . F 5 HOH A 65 565 155 HOH HOH . F 5 HOH A 66 566 23 HOH HOH . F 5 HOH A 67 567 168 HOH HOH . F 5 HOH A 68 568 94 HOH HOH . F 5 HOH A 69 569 183 HOH HOH . F 5 HOH A 70 570 181 HOH HOH . F 5 HOH A 71 571 58 HOH HOH . F 5 HOH A 72 572 248 HOH HOH . F 5 HOH A 73 573 13 HOH HOH . F 5 HOH A 74 574 206 HOH HOH . F 5 HOH A 75 575 104 HOH HOH . F 5 HOH A 76 576 49 HOH HOH . F 5 HOH A 77 577 53 HOH HOH . F 5 HOH A 78 578 97 HOH HOH . F 5 HOH A 79 579 15 HOH HOH . F 5 HOH A 80 580 147 HOH HOH . F 5 HOH A 81 581 179 HOH HOH . F 5 HOH A 82 582 238 HOH HOH . F 5 HOH A 83 583 20 HOH HOH . F 5 HOH A 84 584 4 HOH HOH . F 5 HOH A 85 585 39 HOH HOH . F 5 HOH A 86 586 109 HOH HOH . F 5 HOH A 87 587 83 HOH HOH . F 5 HOH A 88 588 199 HOH HOH . F 5 HOH A 89 589 201 HOH HOH . F 5 HOH A 90 590 254 HOH HOH . F 5 HOH A 91 591 24 HOH HOH . F 5 HOH A 92 592 45 HOH HOH . F 5 HOH A 93 593 110 HOH HOH . F 5 HOH A 94 594 112 HOH HOH . F 5 HOH A 95 595 46 HOH HOH . F 5 HOH A 96 596 100 HOH HOH . F 5 HOH A 97 597 10 HOH HOH . F 5 HOH A 98 598 61 HOH HOH . F 5 HOH A 99 599 235 HOH HOH . F 5 HOH A 100 600 51 HOH HOH . F 5 HOH A 101 601 140 HOH HOH . F 5 HOH A 102 602 68 HOH HOH . F 5 HOH A 103 603 149 HOH HOH . F 5 HOH A 104 604 55 HOH HOH . F 5 HOH A 105 605 90 HOH HOH . F 5 HOH A 106 606 228 HOH HOH . F 5 HOH A 107 607 64 HOH HOH . F 5 HOH A 108 608 35 HOH HOH . F 5 HOH A 109 609 243 HOH HOH . F 5 HOH A 110 610 38 HOH HOH . F 5 HOH A 111 611 91 HOH HOH . F 5 HOH A 112 612 99 HOH HOH . F 5 HOH A 113 613 220 HOH HOH . F 5 HOH A 114 614 133 HOH HOH . F 5 HOH A 115 615 217 HOH HOH . F 5 HOH A 116 616 57 HOH HOH . F 5 HOH A 117 617 87 HOH HOH . F 5 HOH A 118 618 143 HOH HOH . F 5 HOH A 119 619 31 HOH HOH . F 5 HOH A 120 620 6 HOH HOH . F 5 HOH A 121 621 128 HOH HOH . F 5 HOH A 122 622 158 HOH HOH . F 5 HOH A 123 623 52 HOH HOH . F 5 HOH A 124 624 153 HOH HOH . F 5 HOH A 125 625 163 HOH HOH . F 5 HOH A 126 626 65 HOH HOH . F 5 HOH A 127 627 142 HOH HOH . F 5 HOH A 128 628 247 HOH HOH . F 5 HOH A 129 629 118 HOH HOH . F 5 HOH A 130 630 102 HOH HOH . F 5 HOH A 131 631 92 HOH HOH . F 5 HOH A 132 632 188 HOH HOH . F 5 HOH A 133 633 225 HOH HOH . F 5 HOH A 134 634 164 HOH HOH . F 5 HOH A 135 635 219 HOH HOH . F 5 HOH A 136 636 114 HOH HOH . F 5 HOH A 137 637 124 HOH HOH . F 5 HOH A 138 638 32 HOH HOH . F 5 HOH A 139 639 77 HOH HOH . F 5 HOH A 140 640 21 HOH HOH . F 5 HOH A 141 641 72 HOH HOH . F 5 HOH A 142 642 236 HOH HOH . F 5 HOH A 143 643 26 HOH HOH . F 5 HOH A 144 644 233 HOH HOH . F 5 HOH A 145 645 145 HOH HOH . F 5 HOH A 146 646 165 HOH HOH . F 5 HOH A 147 647 40 HOH HOH . F 5 HOH A 148 648 73 HOH HOH . F 5 HOH A 149 649 252 HOH HOH . F 5 HOH A 150 650 213 HOH HOH . F 5 HOH A 151 651 245 HOH HOH . F 5 HOH A 152 652 63 HOH HOH . F 5 HOH A 153 653 194 HOH HOH . F 5 HOH A 154 654 154 HOH HOH . F 5 HOH A 155 655 107 HOH HOH . F 5 HOH A 156 656 120 HOH HOH . F 5 HOH A 157 657 44 HOH HOH . F 5 HOH A 158 658 12 HOH HOH . F 5 HOH A 159 659 36 HOH HOH . F 5 HOH A 160 660 246 HOH HOH . F 5 HOH A 161 661 150 HOH HOH . F 5 HOH A 162 662 198 HOH HOH . F 5 HOH A 163 663 178 HOH HOH . F 5 HOH A 164 664 11 HOH HOH . F 5 HOH A 165 665 241 HOH HOH . F 5 HOH A 166 666 56 HOH HOH . F 5 HOH A 167 667 96 HOH HOH . F 5 HOH A 168 668 74 HOH HOH . F 5 HOH A 169 669 180 HOH HOH . F 5 HOH A 170 670 260 HOH HOH . F 5 HOH A 171 671 259 HOH HOH . F 5 HOH A 172 672 281 HOH HOH . F 5 HOH A 173 673 211 HOH HOH . F 5 HOH A 174 674 174 HOH HOH . F 5 HOH A 175 675 82 HOH HOH . F 5 HOH A 176 676 268 HOH HOH . F 5 HOH A 177 677 167 HOH HOH . F 5 HOH A 178 678 257 HOH HOH . F 5 HOH A 179 679 139 HOH HOH . F 5 HOH A 180 680 18 HOH HOH . F 5 HOH A 181 681 113 HOH HOH . F 5 HOH A 182 682 200 HOH HOH . F 5 HOH A 183 683 79 HOH HOH . F 5 HOH A 184 684 136 HOH HOH . F 5 HOH A 185 685 277 HOH HOH . F 5 HOH A 186 686 272 HOH HOH . F 5 HOH A 187 687 47 HOH HOH . F 5 HOH A 188 688 76 HOH HOH . F 5 HOH A 189 689 175 HOH HOH . F 5 HOH A 190 690 197 HOH HOH . F 5 HOH A 191 691 85 HOH HOH . F 5 HOH A 192 692 159 HOH HOH . F 5 HOH A 193 693 41 HOH HOH . F 5 HOH A 194 694 255 HOH HOH . F 5 HOH A 195 695 263 HOH HOH . F 5 HOH A 196 696 261 HOH HOH . F 5 HOH A 197 697 151 HOH HOH . F 5 HOH A 198 698 7 HOH HOH . F 5 HOH A 199 699 98 HOH HOH . F 5 HOH A 200 700 212 HOH HOH . F 5 HOH A 201 701 264 HOH HOH . F 5 HOH A 202 702 81 HOH HOH . F 5 HOH A 203 703 160 HOH HOH . F 5 HOH A 204 704 156 HOH HOH . F 5 HOH A 205 705 8 HOH HOH . F 5 HOH A 206 706 106 HOH HOH . F 5 HOH A 207 707 186 HOH HOH . F 5 HOH A 208 708 84 HOH HOH . F 5 HOH A 209 709 131 HOH HOH . F 5 HOH A 210 710 161 HOH HOH . F 5 HOH A 211 711 185 HOH HOH . F 5 HOH A 212 712 166 HOH HOH . F 5 HOH A 213 713 244 HOH HOH . F 5 HOH A 214 714 273 HOH HOH . F 5 HOH A 215 715 192 HOH HOH . F 5 HOH A 216 716 232 HOH HOH . F 5 HOH A 217 717 137 HOH HOH . F 5 HOH A 218 718 66 HOH HOH . F 5 HOH A 219 719 224 HOH HOH . F 5 HOH A 220 720 59 HOH HOH . F 5 HOH A 221 721 249 HOH HOH . F 5 HOH A 222 722 121 HOH HOH . F 5 HOH A 223 723 189 HOH HOH . F 5 HOH A 224 724 138 HOH HOH . F 5 HOH A 225 725 229 HOH HOH . F 5 HOH A 226 726 237 HOH HOH . F 5 HOH A 227 727 203 HOH HOH . F 5 HOH A 228 728 148 HOH HOH . F 5 HOH A 229 729 262 HOH HOH . F 5 HOH A 230 730 75 HOH HOH . F 5 HOH A 231 731 187 HOH HOH . F 5 HOH A 232 732 182 HOH HOH . F 5 HOH A 233 733 152 HOH HOH . F 5 HOH A 234 734 275 HOH HOH . F 5 HOH A 235 735 276 HOH HOH . F 5 HOH A 236 736 202 HOH HOH . F 5 HOH A 237 737 146 HOH HOH . F 5 HOH A 238 738 71 HOH HOH . F 5 HOH A 239 739 270 HOH HOH . F 5 HOH A 240 740 195 HOH HOH . F 5 HOH A 241 741 196 HOH HOH . F 5 HOH A 242 742 34 HOH HOH . F 5 HOH A 243 743 226 HOH HOH . F 5 HOH A 244 744 117 HOH HOH . F 5 HOH A 245 745 54 HOH HOH . F 5 HOH A 246 746 105 HOH HOH . F 5 HOH A 247 747 240 HOH HOH . F 5 HOH A 248 748 227 HOH HOH . F 5 HOH A 249 749 103 HOH HOH . F 5 HOH A 250 750 119 HOH HOH . F 5 HOH A 251 751 177 HOH HOH . F 5 HOH A 252 752 221 HOH HOH . F 5 HOH A 253 753 279 HOH HOH . F 5 HOH A 254 754 214 HOH HOH . F 5 HOH A 255 755 280 HOH HOH . F 5 HOH A 256 756 157 HOH HOH . F 5 HOH A 257 757 171 HOH HOH . F 5 HOH A 258 758 144 HOH HOH . F 5 HOH A 259 759 242 HOH HOH . F 5 HOH A 260 760 208 HOH HOH . F 5 HOH A 261 761 274 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -19.17 _atom_site.Cartn_y -17.98 _atom_site.Cartn_z -21.602 _atom_site.occupancy 0.8 _atom_site.B_iso_or_equiv 21.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #