data_6SEC # _model_server_result.job_id dw8P022uGck0MXnyfZCFNw _model_server_result.datetime_utc '2024-11-05 16:21:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1103}' # _entry.id 6SEC # _exptl.entry_id 6SEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SEC _cell.length_a 137.33 _cell.length_b 137.33 _cell.length_c 126.784 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 207 A ASP 207 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc2 A O PHE 581 A PHE 581 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc3 A OD2 ASP 584 A ASP 584 1_555 D NA NA . A NA 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 D NA NA . A NA 1103 1_555 E O6 145 . A 145 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc5 D NA NA . A NA 1103 1_555 F O HOH . A HOH 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SEC _atom_sites.fract_transf_matrix[1][1] 0.007282 _atom_sites.fract_transf_matrix[1][2] 0.004204 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008408 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007887 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 1101 1 ACT ACT . C 2 ACT A 1 1102 2 ACT ACT . D 3 NA A 1 1103 1 NA NA . E 4 145 A 1 1104 1 145 145 . F 5 HOH A 1 1201 55 HOH HOH . F 5 HOH A 2 1202 102 HOH HOH . F 5 HOH A 3 1203 48 HOH HOH . F 5 HOH A 4 1204 57 HOH HOH . F 5 HOH A 5 1205 111 HOH HOH . F 5 HOH A 6 1206 63 HOH HOH . F 5 HOH A 7 1207 53 HOH HOH . F 5 HOH A 8 1208 100 HOH HOH . F 5 HOH A 9 1209 105 HOH HOH . F 5 HOH A 10 1210 87 HOH HOH . F 5 HOH A 11 1211 51 HOH HOH . F 5 HOH A 12 1212 128 HOH HOH . F 5 HOH A 13 1213 93 HOH HOH . F 5 HOH A 14 1214 65 HOH HOH . F 5 HOH A 15 1215 61 HOH HOH . F 5 HOH A 16 1216 121 HOH HOH . F 5 HOH A 17 1217 103 HOH HOH . F 5 HOH A 18 1218 18 HOH HOH . F 5 HOH A 19 1219 109 HOH HOH . F 5 HOH A 20 1220 31 HOH HOH . F 5 HOH A 21 1221 126 HOH HOH . F 5 HOH A 22 1222 68 HOH HOH . F 5 HOH A 23 1223 25 HOH HOH . F 5 HOH A 24 1224 13 HOH HOH . F 5 HOH A 25 1225 26 HOH HOH . F 5 HOH A 26 1226 64 HOH HOH . F 5 HOH A 27 1227 62 HOH HOH . F 5 HOH A 28 1228 99 HOH HOH . F 5 HOH A 29 1229 19 HOH HOH . F 5 HOH A 30 1230 20 HOH HOH . F 5 HOH A 31 1231 32 HOH HOH . F 5 HOH A 32 1232 66 HOH HOH . F 5 HOH A 33 1233 79 HOH HOH . F 5 HOH A 34 1234 110 HOH HOH . F 5 HOH A 35 1235 83 HOH HOH . F 5 HOH A 36 1236 84 HOH HOH . F 5 HOH A 37 1237 38 HOH HOH . F 5 HOH A 38 1238 34 HOH HOH . F 5 HOH A 39 1239 21 HOH HOH . F 5 HOH A 40 1240 36 HOH HOH . F 5 HOH A 41 1241 30 HOH HOH . F 5 HOH A 42 1242 35 HOH HOH . F 5 HOH A 43 1243 101 HOH HOH . F 5 HOH A 44 1244 5 HOH HOH . F 5 HOH A 45 1245 69 HOH HOH . F 5 HOH A 46 1246 46 HOH HOH . F 5 HOH A 47 1247 71 HOH HOH . F 5 HOH A 48 1248 9 HOH HOH . F 5 HOH A 49 1249 4 HOH HOH . F 5 HOH A 50 1250 72 HOH HOH . F 5 HOH A 51 1251 3 HOH HOH . F 5 HOH A 52 1252 10 HOH HOH . F 5 HOH A 53 1253 17 HOH HOH . F 5 HOH A 54 1254 56 HOH HOH . F 5 HOH A 55 1255 15 HOH HOH . F 5 HOH A 56 1256 88 HOH HOH . F 5 HOH A 57 1257 78 HOH HOH . F 5 HOH A 58 1258 106 HOH HOH . F 5 HOH A 59 1259 67 HOH HOH . F 5 HOH A 60 1260 8 HOH HOH . F 5 HOH A 61 1261 116 HOH HOH . F 5 HOH A 62 1262 120 HOH HOH . F 5 HOH A 63 1263 94 HOH HOH . F 5 HOH A 64 1264 24 HOH HOH . F 5 HOH A 65 1265 29 HOH HOH . F 5 HOH A 66 1266 47 HOH HOH . F 5 HOH A 67 1267 45 HOH HOH . F 5 HOH A 68 1268 115 HOH HOH . F 5 HOH A 69 1269 77 HOH HOH . F 5 HOH A 70 1270 33 HOH HOH . F 5 HOH A 71 1271 44 HOH HOH . F 5 HOH A 72 1272 124 HOH HOH . F 5 HOH A 73 1273 1 HOH HOH . F 5 HOH A 74 1274 54 HOH HOH . F 5 HOH A 75 1275 133 HOH HOH . F 5 HOH A 76 1276 2 HOH HOH . F 5 HOH A 77 1277 58 HOH HOH . F 5 HOH A 78 1278 37 HOH HOH . F 5 HOH A 79 1279 112 HOH HOH . F 5 HOH A 80 1280 70 HOH HOH . F 5 HOH A 81 1281 86 HOH HOH . F 5 HOH A 82 1282 6 HOH HOH . F 5 HOH A 83 1283 22 HOH HOH . F 5 HOH A 84 1284 23 HOH HOH . F 5 HOH A 85 1285 107 HOH HOH . F 5 HOH A 86 1286 81 HOH HOH . F 5 HOH A 87 1287 50 HOH HOH . F 5 HOH A 88 1288 91 HOH HOH . F 5 HOH A 89 1289 28 HOH HOH . F 5 HOH A 90 1290 76 HOH HOH . F 5 HOH A 91 1291 7 HOH HOH . F 5 HOH A 92 1292 43 HOH HOH . F 5 HOH A 93 1293 41 HOH HOH . F 5 HOH A 94 1294 14 HOH HOH . F 5 HOH A 95 1295 92 HOH HOH . F 5 HOH A 96 1296 80 HOH HOH . F 5 HOH A 97 1297 73 HOH HOH . F 5 HOH A 98 1298 74 HOH HOH . F 5 HOH A 99 1299 90 HOH HOH . F 5 HOH A 100 1300 129 HOH HOH . F 5 HOH A 101 1301 39 HOH HOH . F 5 HOH A 102 1302 60 HOH HOH . F 5 HOH A 103 1303 97 HOH HOH . F 5 HOH A 104 1304 75 HOH HOH . F 5 HOH A 105 1305 127 HOH HOH . F 5 HOH A 106 1306 11 HOH HOH . F 5 HOH A 107 1307 12 HOH HOH . F 5 HOH A 108 1308 52 HOH HOH . F 5 HOH A 109 1309 85 HOH HOH . F 5 HOH A 110 1310 113 HOH HOH . F 5 HOH A 111 1311 49 HOH HOH . F 5 HOH A 112 1312 40 HOH HOH . F 5 HOH A 113 1313 89 HOH HOH . F 5 HOH A 114 1314 96 HOH HOH . F 5 HOH A 115 1315 95 HOH HOH . F 5 HOH A 116 1316 114 HOH HOH . F 5 HOH A 117 1317 122 HOH HOH . F 5 HOH A 118 1318 98 HOH HOH . F 5 HOH A 119 1319 59 HOH HOH . F 5 HOH A 120 1320 119 HOH HOH . F 5 HOH A 121 1321 108 HOH HOH . F 5 HOH A 122 1322 131 HOH HOH . F 5 HOH A 123 1323 42 HOH HOH . F 5 HOH A 124 1324 104 HOH HOH . F 5 HOH A 125 1325 132 HOH HOH . F 5 HOH A 126 1326 16 HOH HOH . F 5 HOH A 127 1327 123 HOH HOH . F 5 HOH A 128 1328 130 HOH HOH . F 5 HOH A 129 1329 27 HOH HOH . F 5 HOH A 130 1330 118 HOH HOH . F 5 HOH A 131 1331 117 HOH HOH . F 5 HOH A 132 1332 82 HOH HOH . F 5 HOH A 133 1333 125 HOH HOH . F 5 HOH A 134 1334 134 HOH HOH . F 5 HOH A 135 1335 135 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 33.851 _atom_site.Cartn_y 32.67 _atom_site.Cartn_z 16.177 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 92 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #