data_6SEM
#
_model_server_result.job_id            vvKqdajfE51ArMZX5jGC-A 
_model_server_result.datetime_utc      '2025-08-31 04:51:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sem 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    6SEM 
#
_exptl.entry_id    6SEM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.91 
_cell.angle_gamma         90 
_cell.entry_id            6SEM 
_cell.length_a            152.961 
_cell.length_b            147.776 
_cell.length_c            144.931 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SEM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,K 1 1 
B,D,F,H,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     6SEM 
_atom_sites.fract_transf_matrix[1][1]    0.006538 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000792 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006767 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00695 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD B 1 601 601 FAD FAD . 
F 2 FAD A 1 601 601 FAD FAD . 
G 2 FAD C 1 601 601 FAD FAD . 
H 2 FAD D 1 601 601 FAD FAD . 
I 3 HOH B 1 701 2 HOH HOH . 
I 3 HOH B 2 702 43 HOH HOH . 
I 3 HOH B 3 703 26 HOH HOH . 
I 3 HOH B 4 704 3 HOH HOH . 
I 3 HOH B 5 705 38 HOH HOH . 
I 3 HOH B 6 706 56 HOH HOH . 
I 3 HOH B 7 707 113 HOH HOH . 
I 3 HOH B 8 708 10 HOH HOH . 
I 3 HOH B 9 709 4 HOH HOH . 
I 3 HOH B 10 710 117 HOH HOH . 
I 3 HOH B 11 711 48 HOH HOH . 
I 3 HOH B 12 712 71 HOH HOH . 
I 3 HOH B 13 713 51 HOH HOH . 
I 3 HOH B 14 714 41 HOH HOH . 
I 3 HOH B 15 715 65 HOH HOH . 
I 3 HOH B 16 716 64 HOH HOH . 
J 3 HOH A 1 701 62 HOH HOH . 
J 3 HOH A 2 702 5 HOH HOH . 
J 3 HOH A 3 703 28 HOH HOH . 
J 3 HOH A 4 704 52 HOH HOH . 
J 3 HOH A 5 705 35 HOH HOH . 
J 3 HOH A 6 706 58 HOH HOH . 
J 3 HOH A 7 707 89 HOH HOH . 
J 3 HOH A 8 708 88 HOH HOH . 
J 3 HOH A 9 709 69 HOH HOH . 
J 3 HOH A 10 710 75 HOH HOH . 
K 3 HOH C 1 701 23 HOH HOH . 
K 3 HOH C 2 702 39 HOH HOH . 
K 3 HOH C 3 703 25 HOH HOH . 
K 3 HOH C 4 704 53 HOH HOH . 
K 3 HOH C 5 705 83 HOH HOH . 
K 3 HOH C 6 706 67 HOH HOH . 
K 3 HOH C 7 707 73 HOH HOH . 
K 3 HOH C 8 708 82 HOH HOH . 
K 3 HOH C 9 709 20 HOH HOH . 
K 3 HOH C 10 710 66 HOH HOH . 
K 3 HOH C 11 711 118 HOH HOH . 
K 3 HOH C 12 712 68 HOH HOH . 
K 3 HOH C 13 713 49 HOH HOH . 
K 3 HOH C 14 714 63 HOH HOH . 
K 3 HOH C 15 715 85 HOH HOH . 
L 3 HOH D 1 701 6 HOH HOH . 
L 3 HOH D 2 702 42 HOH HOH . 
L 3 HOH D 3 703 60 HOH HOH . 
L 3 HOH D 4 704 21 HOH HOH . 
L 3 HOH D 5 705 27 HOH HOH . 
L 3 HOH D 6 706 72 HOH HOH . 
L 3 HOH D 7 707 9 HOH HOH . 
L 3 HOH D 8 708 79 HOH HOH . 
L 3 HOH D 9 709 84 HOH HOH . 
L 3 HOH D 10 710 31 HOH HOH . 
L 3 HOH D 11 711 17 HOH HOH . 
L 3 HOH D 12 712 77 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . E 2 7.584 -42.011 52.052 1 82 ? PA FAD 601 B 1 
HETATM 2 O O1A FAD . . . E 2 6.185 -42.453 51.607 1 71.54 ? O1A FAD 601 B 1 
HETATM 3 O O2A FAD . . . E 2 7.946 -40.711 52.764 1 74.6 ? O2A FAD 601 B 1 
HETATM 4 O O5B FAD . . . E 2 8.109 -43.167 53.006 1 98.94 ? O5B FAD 601 B 1 
HETATM 5 C C5B FAD . . . E 2 8.296 -42.959 54.404 1 105.58 ? C5B FAD 601 B 1 
HETATM 6 C C4B FAD . . . E 2 7.94 -44.266 55.111 1 100.57 ? C4B FAD 601 B 1 
HETATM 7 O O4B FAD . . . E 2 9.121 -44.781 55.725 1 98.62 ? O4B FAD 601 B 1 
HETATM 8 C C3B FAD . . . E 2 6.917 -44.029 56.203 1 93.6 ? C3B FAD 601 B 1 
HETATM 9 O O3B FAD . . . E 2 6.124 -45.208 56.391 1 79.68 ? O3B FAD 601 B 1 
HETATM 10 C C2B FAD . . . E 2 7.833 -43.674 57.353 1 92.3 ? C2B FAD 601 B 1 
HETATM 11 O O2B FAD . . . E 2 7.282 -43.832 58.658 1 98.3 ? O2B FAD 601 B 1 
HETATM 12 C C1B FAD . . . E 2 8.937 -44.676 57.131 1 94.83 ? C1B FAD 601 B 1 
HETATM 13 N N9A FAD . . . E 2 10.166 -44.308 57.872 1 89.42 ? N9A FAD 601 B 1 
HETATM 14 C C8A FAD . . . E 2 10.814 -43.134 57.9 1 83.89 ? C8A FAD 601 B 1 
HETATM 15 N N7A FAD . . . E 2 11.879 -43.213 58.734 1 77.76 ? N7A FAD 601 B 1 
HETATM 16 C C5A FAD . . . E 2 11.88 -44.451 59.242 1 73.16 ? C5A FAD 601 B 1 
HETATM 17 C C6A FAD . . . E 2 12.711 -45.213 60.172 1 78.6 ? C6A FAD 601 B 1 
HETATM 18 N N6A FAD . . . E 2 13.803 -44.666 60.761 1 83.09 ? N6A FAD 601 B 1 
HETATM 19 N N1A FAD . . . E 2 12.344 -46.48 60.425 1 81.96 ? N1A FAD 601 B 1 
HETATM 20 C C2A FAD . . . E 2 11.271 -47.081 59.876 1 81.78 ? C2A FAD 601 B 1 
HETATM 21 N N3A FAD . . . E 2 10.48 -46.449 59.021 1 72.54 ? N3A FAD 601 B 1 
HETATM 22 C C4A FAD . . . E 2 10.755 -45.168 58.678 1 76.46 ? C4A FAD 601 B 1 
HETATM 23 N N1 FAD . . . E 2 4.752 -39.118 42.539 1 79.77 ? N1 FAD 601 B 1 
HETATM 24 C C2 FAD . . . E 2 4.006 -39.55 41.487 1 76.84 ? C2 FAD 601 B 1 
HETATM 25 O O2 FAD . . . E 2 4.438 -40.466 40.785 1 75.87 ? O2 FAD 601 B 1 
HETATM 26 N N3 FAD . . . E 2 2.817 -39.046 41.151 1 78.39 ? N3 FAD 601 B 1 
HETATM 27 C C4 FAD . . . E 2 2.269 -38.05 41.853 1 84.77 ? C4 FAD 601 B 1 
HETATM 28 O O4 FAD . . . E 2 1.155 -37.587 41.512 1 93.33 ? O4 FAD 601 B 1 
HETATM 29 C C4X FAD . . . E 2 3.015 -37.497 43.023 1 86 ? C4X FAD 601 B 1 
HETATM 30 N N5 FAD . . . E 2 2.51 -36.504 43.781 1 83.39 ? N5 FAD 601 B 1 
HETATM 31 C C5X FAD . . . E 2 3.187 -36.011 44.84 1 91.11 ? C5X FAD 601 B 1 
HETATM 32 C C6 FAD . . . E 2 2.594 -34.974 45.546 1 95.75 ? C6 FAD 601 B 1 
HETATM 33 C C7 FAD . . . E 2 3.232 -34.407 46.637 1 94.4 ? C7 FAD 601 B 1 
HETATM 34 C C7M FAD . . . E 2 2.581 -33.279 47.387 1 98.27 ? C7M FAD 601 B 1 
HETATM 35 C C8 FAD . . . E 2 4.552 -34.917 47.056 1 93.74 ? C8 FAD 601 B 1 
HETATM 36 C C8M FAD . . . E 2 5.207 -34.283 48.253 1 96.14 ? C8M FAD 601 B 1 
HETATM 37 C C9 FAD . . . E 2 5.163 -35.964 46.357 1 93.72 ? C9 FAD 601 B 1 
HETATM 38 C C9A FAD . . . E 2 4.533 -36.541 45.239 1 93.89 ? C9A FAD 601 B 1 
HETATM 39 N N10 FAD . . . E 2 5.092 -37.62 44.473 1 93.17 ? N10 FAD 601 B 1 
HETATM 40 C C10 FAD . . . E 2 4.338 -38.103 43.347 1 88.85 ? C10 FAD 601 B 1 
HETATM 41 C C1' FAD . . . E 2 6.412 -38.232 44.794 1 84.41 ? C1' FAD 601 B 1 
HETATM 42 C C2' FAD . . . E 2 6.274 -39.493 45.659 1 75.51 ? C2' FAD 601 B 1 
HETATM 43 O O2' FAD . . . E 2 5.022 -40.141 45.385 1 64.81 ? O2' FAD 601 B 1 
HETATM 44 C C3' FAD . . . E 2 6.312 -39.205 47.149 1 72.64 ? C3' FAD 601 B 1 
HETATM 45 O O3' FAD . . . E 2 7.408 -38.321 47.452 1 69.63 ? O3' FAD 601 B 1 
HETATM 46 C C4' FAD . . . E 2 6.266 -40.515 47.983 1 71.51 ? C4' FAD 601 B 1 
HETATM 47 O O4' FAD . . . E 2 6.376 -40.163 49.354 1 80.67 ? O4' FAD 601 B 1 
HETATM 48 C C5' FAD . . . E 2 7.307 -41.613 47.795 1 69.39 ? C5' FAD 601 B 1 
HETATM 49 O O5' FAD . . . E 2 7.192 -42.62 48.844 1 72.71 ? O5' FAD 601 B 1 
HETATM 50 P P FAD . . . E 2 8.463 -43.213 49.69 1 65.53 ? P FAD 601 B 1 
HETATM 51 O O1P FAD . . . E 2 8.157 -44.644 50.106 1 62.64 ? O1P FAD 601 B 1 
HETATM 52 O O2P FAD . . . E 2 9.765 -42.975 48.981 1 67.71 ? O2P FAD 601 B 1 
HETATM 53 O O3P FAD . . . E 2 8.653 -42.155 50.875 1 65.23 ? O3P FAD 601 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    52 
_model_server_stats.query_time_ms           415 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#