data_6SEY # _model_server_result.job_id JhKy2DwqSQveXgvMRMZSTQ _model_server_result.datetime_utc '2025-01-10 08:44:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":306}' # _entry.id 6SEY # _exptl.entry_id 6SEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.681 _cell.angle_gamma 90 _cell.entry_id 6SEY _cell.length_a 42.671 _cell.length_b 41.842 _cell.length_c 72.836 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 99 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A NE2 HIS 101 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A ND1 HIS 124 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A O GLN 141 A GLN 137 1_555 D HG BE7 . A BE7 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.981 ? metalc ? metalc5 A O GLU 209 A GLU 205 1_555 D HG BE7 . A BE7 303 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.063 ? metalc ? metalc6 A SG CYS 210 A CYS 206 1_555 C HG HG . A HG 302 1_555 ? B ? ? B ? ? ? ? ? ? ? 3.07 ? metalc ? metalc7 A SG CYS 210 A CYS 206 1_555 D HG BE7 . A BE7 303 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.382 ? metalc ? metalc8 B ZN ZN . A ZN 301 1_555 H N L9B . A L9B 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc9 C HG HG . A HG 302 1_555 J O HOH . A HOH 540 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc10 D HG BE7 . A BE7 303 1_555 J O HOH . A HOH 540 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.808 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id GLC _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GLC sing 123 n n C1 O1 GLC sing 124 n n C1 O5 GLC sing 125 n n C1 H1 GLC sing 126 n n C2 C3 GLC sing 127 n n C2 O2 GLC sing 128 n n C2 H2 GLC sing 129 n n C3 C4 GLC sing 130 n n C3 O3 GLC sing 131 n n C3 H3 GLC sing 132 n n C4 C5 GLC sing 133 n n C4 O4 GLC sing 134 n n C4 H4 GLC sing 135 n n C5 C6 GLC sing 136 n n C5 O5 GLC sing 137 n n C5 H5 GLC sing 138 n n C6 O6 GLC sing 139 n n C6 H61 GLC sing 140 n n C6 H62 GLC sing 141 n n O1 HO1 GLC sing 142 n n O2 HO2 GLC sing 143 n n O3 HO3 GLC sing 144 n n O4 HO4 GLC sing 145 n n O6 HO6 GLC sing 146 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 GLC a-D-glucopyranose 'COMMON NAME' GMML 1 GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6SEY _atom_sites.fract_transf_matrix[1][1] 0.023435 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00614 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 HG A 1 302 2 HG HG . D 4 BE7 A 1 303 1 BE7 BE7 . E 5 BGC A 1 304 1 BGC BGC . F 5 BGC A 1 305 2 BGC BGC . G 6 GLC A 1 306 1 GLC GLC . H 7 L9B A 1 307 1 L9B XXX . I 7 L9B A 1 308 2 L9B XXX . J 8 HOH A 1 401 99 HOH HOH . J 8 HOH A 2 402 120 HOH HOH . J 8 HOH A 3 403 56 HOH HOH . J 8 HOH A 4 404 223 HOH HOH . J 8 HOH A 5 405 222 HOH HOH . J 8 HOH A 6 406 92 HOH HOH . J 8 HOH A 7 407 43 HOH HOH . J 8 HOH A 8 408 161 HOH HOH . J 8 HOH A 9 409 1 HOH HOH . J 8 HOH A 10 410 67 HOH HOH . J 8 HOH A 11 411 122 HOH HOH . J 8 HOH A 12 412 214 HOH HOH . J 8 HOH A 13 413 143 HOH HOH . J 8 HOH A 14 414 3 HOH HOH . J 8 HOH A 15 415 226 HOH HOH . J 8 HOH A 16 416 33 HOH HOH . J 8 HOH A 17 417 124 HOH HOH . J 8 HOH A 18 418 193 HOH HOH . J 8 HOH A 19 419 156 HOH HOH . J 8 HOH A 20 420 150 HOH HOH . J 8 HOH A 21 421 111 HOH HOH . J 8 HOH A 22 422 34 HOH HOH . J 8 HOH A 23 423 221 HOH HOH . J 8 HOH A 24 424 10 HOH HOH . J 8 HOH A 25 425 21 HOH HOH . J 8 HOH A 26 426 80 HOH HOH . J 8 HOH A 27 427 62 HOH HOH . J 8 HOH A 28 428 73 HOH HOH . J 8 HOH A 29 429 123 HOH HOH . J 8 HOH A 30 430 13 HOH HOH . J 8 HOH A 31 431 104 HOH HOH . J 8 HOH A 32 432 138 HOH HOH . J 8 HOH A 33 433 63 HOH HOH . J 8 HOH A 34 434 172 HOH HOH . J 8 HOH A 35 435 17 HOH HOH . J 8 HOH A 36 436 237 HOH HOH . J 8 HOH A 37 437 194 HOH HOH . J 8 HOH A 38 438 198 HOH HOH . J 8 HOH A 39 439 44 HOH HOH . J 8 HOH A 40 440 16 HOH HOH . J 8 HOH A 41 441 154 HOH HOH . J 8 HOH A 42 442 183 HOH HOH . J 8 HOH A 43 443 148 HOH HOH . J 8 HOH A 44 444 127 HOH HOH . J 8 HOH A 45 445 215 HOH HOH . J 8 HOH A 46 446 38 HOH HOH . J 8 HOH A 47 447 8 HOH HOH . J 8 HOH A 48 448 201 HOH HOH . J 8 HOH A 49 449 243 HOH HOH . J 8 HOH A 50 450 23 HOH HOH . J 8 HOH A 51 451 188 HOH HOH . J 8 HOH A 52 452 29 HOH HOH . J 8 HOH A 53 453 146 HOH HOH . J 8 HOH A 54 454 144 HOH HOH . J 8 HOH A 55 455 234 HOH HOH . J 8 HOH A 56 456 42 HOH HOH . J 8 HOH A 57 457 108 HOH HOH . J 8 HOH A 58 458 41 HOH HOH . J 8 HOH A 59 459 26 HOH HOH . J 8 HOH A 60 460 106 HOH HOH . J 8 HOH A 61 461 114 HOH HOH . J 8 HOH A 62 462 191 HOH HOH . J 8 HOH A 63 463 149 HOH HOH . J 8 HOH A 64 464 4 HOH HOH . J 8 HOH A 65 465 22 HOH HOH . J 8 HOH A 66 466 225 HOH HOH . J 8 HOH A 67 467 5 HOH HOH . J 8 HOH A 68 468 97 HOH HOH . J 8 HOH A 69 469 71 HOH HOH . J 8 HOH A 70 470 30 HOH HOH . J 8 HOH A 71 471 27 HOH HOH . J 8 HOH A 72 472 2 HOH HOH . J 8 HOH A 73 473 96 HOH HOH . J 8 HOH A 74 474 45 HOH HOH . J 8 HOH A 75 475 128 HOH HOH . J 8 HOH A 76 476 14 HOH HOH . J 8 HOH A 77 477 228 HOH HOH . J 8 HOH A 78 478 164 HOH HOH . J 8 HOH A 79 479 119 HOH HOH . J 8 HOH A 80 480 81 HOH HOH . J 8 HOH A 81 481 53 HOH HOH . J 8 HOH A 82 482 39 HOH HOH . J 8 HOH A 83 483 57 HOH HOH . J 8 HOH A 84 484 54 HOH HOH . J 8 HOH A 85 485 50 HOH HOH . J 8 HOH A 86 486 134 HOH HOH . J 8 HOH A 87 487 11 HOH HOH . J 8 HOH A 88 488 60 HOH HOH . J 8 HOH A 89 489 24 HOH HOH . J 8 HOH A 90 490 20 HOH HOH . J 8 HOH A 91 491 115 HOH HOH . J 8 HOH A 92 492 35 HOH HOH . J 8 HOH A 93 493 58 HOH HOH . J 8 HOH A 94 494 86 HOH HOH . J 8 HOH A 95 495 224 HOH HOH . J 8 HOH A 96 496 28 HOH HOH . J 8 HOH A 97 497 79 HOH HOH . J 8 HOH A 98 498 69 HOH HOH . J 8 HOH A 99 499 139 HOH HOH . J 8 HOH A 100 500 107 HOH HOH . J 8 HOH A 101 501 82 HOH HOH . J 8 HOH A 102 502 235 HOH HOH . J 8 HOH A 103 503 170 HOH HOH . J 8 HOH A 104 504 49 HOH HOH . J 8 HOH A 105 505 230 HOH HOH . J 8 HOH A 106 506 185 HOH HOH . J 8 HOH A 107 507 178 HOH HOH . J 8 HOH A 108 508 31 HOH HOH . J 8 HOH A 109 509 76 HOH HOH . J 8 HOH A 110 510 12 HOH HOH . J 8 HOH A 111 511 187 HOH HOH . J 8 HOH A 112 512 87 HOH HOH . J 8 HOH A 113 513 171 HOH HOH . J 8 HOH A 114 514 159 HOH HOH . J 8 HOH A 115 515 18 HOH HOH . J 8 HOH A 116 516 126 HOH HOH . J 8 HOH A 117 517 192 HOH HOH . J 8 HOH A 118 518 77 HOH HOH . J 8 HOH A 119 519 15 HOH HOH . J 8 HOH A 120 520 51 HOH HOH . J 8 HOH A 121 521 147 HOH HOH . J 8 HOH A 122 522 151 HOH HOH . J 8 HOH A 123 523 190 HOH HOH . J 8 HOH A 124 524 37 HOH HOH . J 8 HOH A 125 525 105 HOH HOH . J 8 HOH A 126 526 40 HOH HOH . J 8 HOH A 127 527 112 HOH HOH . J 8 HOH A 128 528 32 HOH HOH . J 8 HOH A 129 529 64 HOH HOH . J 8 HOH A 130 530 52 HOH HOH . J 8 HOH A 131 531 36 HOH HOH . J 8 HOH A 132 532 239 HOH HOH . J 8 HOH A 133 533 98 HOH HOH . J 8 HOH A 134 534 103 HOH HOH . J 8 HOH A 135 535 72 HOH HOH . J 8 HOH A 136 536 78 HOH HOH . J 8 HOH A 137 537 59 HOH HOH . J 8 HOH A 138 538 217 HOH HOH . J 8 HOH A 139 539 89 HOH HOH . J 8 HOH A 140 540 75 HOH HOH . J 8 HOH A 141 541 46 HOH HOH . J 8 HOH A 142 542 137 HOH HOH . J 8 HOH A 143 543 140 HOH HOH . J 8 HOH A 144 544 129 HOH HOH . J 8 HOH A 145 545 135 HOH HOH . J 8 HOH A 146 546 61 HOH HOH . J 8 HOH A 147 547 169 HOH HOH . J 8 HOH A 148 548 155 HOH HOH . J 8 HOH A 149 549 186 HOH HOH . J 8 HOH A 150 550 162 HOH HOH . J 8 HOH A 151 551 118 HOH HOH . J 8 HOH A 152 552 25 HOH HOH . J 8 HOH A 153 553 47 HOH HOH . J 8 HOH A 154 554 84 HOH HOH . J 8 HOH A 155 555 157 HOH HOH . J 8 HOH A 156 556 94 HOH HOH . J 8 HOH A 157 557 125 HOH HOH . J 8 HOH A 158 558 121 HOH HOH . J 8 HOH A 159 559 102 HOH HOH . J 8 HOH A 160 560 141 HOH HOH . J 8 HOH A 161 561 229 HOH HOH . J 8 HOH A 162 562 168 HOH HOH . J 8 HOH A 163 563 93 HOH HOH . J 8 HOH A 164 564 241 HOH HOH . J 8 HOH A 165 565 48 HOH HOH . J 8 HOH A 166 566 145 HOH HOH . J 8 HOH A 167 567 174 HOH HOH . J 8 HOH A 168 568 100 HOH HOH . J 8 HOH A 169 569 130 HOH HOH . J 8 HOH A 170 570 219 HOH HOH . J 8 HOH A 171 571 216 HOH HOH . J 8 HOH A 172 572 231 HOH HOH . J 8 HOH A 173 573 136 HOH HOH . J 8 HOH A 174 574 163 HOH HOH . J 8 HOH A 175 575 202 HOH HOH . J 8 HOH A 176 576 220 HOH HOH . J 8 HOH A 177 577 74 HOH HOH . J 8 HOH A 178 578 177 HOH HOH . J 8 HOH A 179 579 242 HOH HOH . J 8 HOH A 180 580 83 HOH HOH . J 8 HOH A 181 581 165 HOH HOH . J 8 HOH A 182 582 166 HOH HOH . J 8 HOH A 183 583 180 HOH HOH . J 8 HOH A 184 584 206 HOH HOH . J 8 HOH A 185 585 142 HOH HOH . J 8 HOH A 186 586 197 HOH HOH . J 8 HOH A 187 587 88 HOH HOH . J 8 HOH A 188 588 133 HOH HOH . J 8 HOH A 189 589 240 HOH HOH . J 8 HOH A 190 590 158 HOH HOH . J 8 HOH A 191 591 55 HOH HOH . J 8 HOH A 192 592 153 HOH HOH . J 8 HOH A 193 593 236 HOH HOH . J 8 HOH A 194 594 90 HOH HOH . J 8 HOH A 195 595 101 HOH HOH . J 8 HOH A 196 596 207 HOH HOH . J 8 HOH A 197 597 238 HOH HOH . J 8 HOH A 198 598 205 HOH HOH . J 8 HOH A 199 599 117 HOH HOH . J 8 HOH A 200 600 211 HOH HOH . J 8 HOH A 201 601 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GLC . . . G 6 0.51 -1.838 -2.764 0.72 14.51 ? C1 GLC 306 A 1 HETATM 2 C C2 GLC . . . G 6 -0.183 -0.893 -3.737 0.72 15.09 ? C2 GLC 306 A 1 HETATM 3 C C3 GLC . . . G 6 0.494 0.473 -3.72 0.72 14.15 ? C3 GLC 306 A 1 HETATM 4 C C4 GLC . . . G 6 0.6 1.01 -2.298 0.72 12.89 ? C4 GLC 306 A 1 HETATM 5 C C5 GLC . . . G 6 1.239 -0.029 -1.38 0.72 12.89 ? C5 GLC 306 A 1 HETATM 6 C C6 GLC . . . G 6 1.241 0.388 0.077 0.72 12.16 ? C6 GLC 306 A 1 HETATM 7 O O1 GLC . . . G 6 1.821 -2.056 -3.195 0.72 16.49 ? O1 GLC 306 A 1 HETATM 8 O O2 GLC . . . G 6 -0.137 -1.452 -5.045 0.72 16.18 ? O2 GLC 306 A 1 HETATM 9 O O3 GLC . . . G 6 -0.231 1.399 -4.52 0.72 14.9 ? O3 GLC 306 A 1 HETATM 10 O O4 GLC . . . G 6 1.416 2.173 -2.302 0.72 13.36 ? O4 GLC 306 A 1 HETATM 11 O O5 GLC . . . G 6 0.504 -1.259 -1.464 0.72 13.47 ? O5 GLC 306 A 1 HETATM 12 O O6 GLC . . . G 6 -0.057 0.776 0.524 0.72 11.29 ? O6 GLC 306 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #