data_6SF8 # _model_server_result.job_id 7lSGhU1VpA8PfWfYsSQ0kQ _model_server_result.datetime_utc '2024-11-29 03:33:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sf8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 6SF8 # _exptl.entry_id 6SF8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.324 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[(4E)-4-imino-5,6-dimethylfuro[2,3-d]pyrimidin-3(4H)-yl]-N,N-dimethylpropan-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SF8 _cell.length_a 57.903 _cell.length_b 57.903 _cell.length_c 398.288 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SF8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -28.9515 -50.145469 -66.381333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H20 N4 O' _chem_comp.formula_weight 248.324 _chem_comp.id 47Y _chem_comp.mon_nstd_flag . _chem_comp.name 3-[(4E)-4-imino-5,6-dimethylfuro[2,3-d]pyrimidin-3(4H)-yl]-N,N-dimethylpropan-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C1 47Y sing 1 n y O C2 47Y sing 2 n y C C1 47Y sing 3 n n N C2 47Y sing 4 n n N C3 47Y doub 5 n n C1 C11 47Y doub 6 n y C2 C10 47Y doub 7 n y C3 N1 47Y sing 8 n n C11 C10 47Y sing 9 n y C11 C12 47Y sing 10 n n C10 C9 47Y sing 11 n n N1 C9 47Y sing 12 n n N1 C4 47Y sing 13 n n C9 N3 47Y doub 14 n n C4 C5 47Y sing 15 n n C5 C6 47Y sing 16 n n C6 N2 47Y sing 17 n n N2 C7 47Y sing 18 n n N2 C8 47Y sing 19 n n C4 H1 47Y sing 20 n n C4 H2 47Y sing 21 n n C5 H3 47Y sing 22 n n C5 H4 47Y sing 23 n n C6 H5 47Y sing 24 n n C6 H6 47Y sing 25 n n C7 H7 47Y sing 26 n n C7 H8 47Y sing 27 n n C7 H9 47Y sing 28 n n C8 H10 47Y sing 29 n n C8 H11 47Y sing 30 n n C8 H12 47Y sing 31 n n C12 H14 47Y sing 32 n n C12 H15 47Y sing 33 n n C12 H16 47Y sing 34 n n N3 H17 47Y sing 35 n n C H18 47Y sing 36 n n C H19 47Y sing 37 n n C H20 47Y sing 38 n n C3 H21 47Y sing 39 n n # _atom_sites.entry_id 6SF8 _atom_sites.fract_transf_matrix[1][1] 0.01727 _atom_sites.fract_transf_matrix[1][2] 0.009971 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 3 47Y A 1 402 1 47Y XXX . D 4 HOH A 1 501 233 HOH HOH . D 4 HOH A 2 502 249 HOH HOH . D 4 HOH A 3 503 217 HOH HOH . D 4 HOH A 4 504 128 HOH HOH . D 4 HOH A 5 505 173 HOH HOH . D 4 HOH A 6 506 309 HOH HOH . D 4 HOH A 7 507 246 HOH HOH . D 4 HOH A 8 508 296 HOH HOH . D 4 HOH A 9 509 164 HOH HOH . D 4 HOH A 10 510 59 HOH HOH . D 4 HOH A 11 511 139 HOH HOH . D 4 HOH A 12 512 141 HOH HOH . D 4 HOH A 13 513 191 HOH HOH . D 4 HOH A 14 514 78 HOH HOH . D 4 HOH A 15 515 235 HOH HOH . D 4 HOH A 16 516 250 HOH HOH . D 4 HOH A 17 517 25 HOH HOH . D 4 HOH A 18 518 281 HOH HOH . D 4 HOH A 19 519 130 HOH HOH . D 4 HOH A 20 520 260 HOH HOH . D 4 HOH A 21 521 169 HOH HOH . D 4 HOH A 22 522 196 HOH HOH . D 4 HOH A 23 523 35 HOH HOH . D 4 HOH A 24 524 200 HOH HOH . D 4 HOH A 25 525 180 HOH HOH . D 4 HOH A 26 526 262 HOH HOH . D 4 HOH A 27 527 26 HOH HOH . D 4 HOH A 28 528 40 HOH HOH . D 4 HOH A 29 529 143 HOH HOH . D 4 HOH A 30 530 77 HOH HOH . D 4 HOH A 31 531 167 HOH HOH . D 4 HOH A 32 532 27 HOH HOH . D 4 HOH A 33 533 73 HOH HOH . D 4 HOH A 34 534 39 HOH HOH . D 4 HOH A 35 535 140 HOH HOH . D 4 HOH A 36 536 198 HOH HOH . D 4 HOH A 37 537 106 HOH HOH . D 4 HOH A 38 538 88 HOH HOH . D 4 HOH A 39 539 216 HOH HOH . D 4 HOH A 40 540 20 HOH HOH . D 4 HOH A 41 541 12 HOH HOH . D 4 HOH A 42 542 57 HOH HOH . D 4 HOH A 43 543 280 HOH HOH . D 4 HOH A 44 544 149 HOH HOH . D 4 HOH A 45 545 172 HOH HOH . D 4 HOH A 46 546 184 HOH HOH . D 4 HOH A 47 547 132 HOH HOH . D 4 HOH A 48 548 38 HOH HOH . D 4 HOH A 49 549 4 HOH HOH . D 4 HOH A 50 550 30 HOH HOH . D 4 HOH A 51 551 227 HOH HOH . D 4 HOH A 52 552 44 HOH HOH . D 4 HOH A 53 553 168 HOH HOH . D 4 HOH A 54 554 7 HOH HOH . D 4 HOH A 55 555 115 HOH HOH . D 4 HOH A 56 556 113 HOH HOH . D 4 HOH A 57 557 63 HOH HOH . D 4 HOH A 58 558 86 HOH HOH . D 4 HOH A 59 559 87 HOH HOH . D 4 HOH A 60 560 148 HOH HOH . D 4 HOH A 61 561 210 HOH HOH . D 4 HOH A 62 562 3 HOH HOH . D 4 HOH A 63 563 70 HOH HOH . D 4 HOH A 64 564 245 HOH HOH . D 4 HOH A 65 565 135 HOH HOH . D 4 HOH A 66 566 62 HOH HOH . D 4 HOH A 67 567 23 HOH HOH . D 4 HOH A 68 568 119 HOH HOH . D 4 HOH A 69 569 64 HOH HOH . D 4 HOH A 70 570 2 HOH HOH . D 4 HOH A 71 571 54 HOH HOH . D 4 HOH A 72 572 47 HOH HOH . D 4 HOH A 73 573 170 HOH HOH . D 4 HOH A 74 574 150 HOH HOH . D 4 HOH A 75 575 224 HOH HOH . D 4 HOH A 76 576 201 HOH HOH . D 4 HOH A 77 577 188 HOH HOH . D 4 HOH A 78 578 82 HOH HOH . D 4 HOH A 79 579 79 HOH HOH . D 4 HOH A 80 580 116 HOH HOH . D 4 HOH A 81 581 144 HOH HOH . D 4 HOH A 82 582 177 HOH HOH . D 4 HOH A 83 583 36 HOH HOH . D 4 HOH A 84 584 41 HOH HOH . D 4 HOH A 85 585 8 HOH HOH . D 4 HOH A 86 586 102 HOH HOH . D 4 HOH A 87 587 56 HOH HOH . D 4 HOH A 88 588 163 HOH HOH . D 4 HOH A 89 589 175 HOH HOH . D 4 HOH A 90 590 89 HOH HOH . D 4 HOH A 91 591 194 HOH HOH . D 4 HOH A 92 592 1 HOH HOH . D 4 HOH A 93 593 24 HOH HOH . D 4 HOH A 94 594 193 HOH HOH . D 4 HOH A 95 595 197 HOH HOH . D 4 HOH A 96 596 80 HOH HOH . D 4 HOH A 97 597 19 HOH HOH . D 4 HOH A 98 598 74 HOH HOH . D 4 HOH A 99 599 61 HOH HOH . D 4 HOH A 100 600 232 HOH HOH . D 4 HOH A 101 601 22 HOH HOH . D 4 HOH A 102 602 16 HOH HOH . D 4 HOH A 103 603 13 HOH HOH . D 4 HOH A 104 604 154 HOH HOH . D 4 HOH A 105 605 267 HOH HOH . D 4 HOH A 106 606 67 HOH HOH . D 4 HOH A 107 607 208 HOH HOH . D 4 HOH A 108 608 31 HOH HOH . D 4 HOH A 109 609 14 HOH HOH . D 4 HOH A 110 610 112 HOH HOH . D 4 HOH A 111 611 156 HOH HOH . D 4 HOH A 112 612 142 HOH HOH . D 4 HOH A 113 613 98 HOH HOH . D 4 HOH A 114 614 171 HOH HOH . D 4 HOH A 115 615 93 HOH HOH . D 4 HOH A 116 616 289 HOH HOH . D 4 HOH A 117 617 66 HOH HOH . D 4 HOH A 118 618 218 HOH HOH . D 4 HOH A 119 619 190 HOH HOH . D 4 HOH A 120 620 58 HOH HOH . D 4 HOH A 121 621 153 HOH HOH . D 4 HOH A 122 622 118 HOH HOH . D 4 HOH A 123 623 85 HOH HOH . D 4 HOH A 124 624 33 HOH HOH . D 4 HOH A 125 625 114 HOH HOH . D 4 HOH A 126 626 234 HOH HOH . D 4 HOH A 127 627 53 HOH HOH . D 4 HOH A 128 628 252 HOH HOH . D 4 HOH A 129 629 15 HOH HOH . D 4 HOH A 130 630 11 HOH HOH . D 4 HOH A 131 631 84 HOH HOH . D 4 HOH A 132 632 187 HOH HOH . D 4 HOH A 133 633 282 HOH HOH . D 4 HOH A 134 634 228 HOH HOH . D 4 HOH A 135 635 83 HOH HOH . D 4 HOH A 136 636 244 HOH HOH . D 4 HOH A 137 637 299 HOH HOH . D 4 HOH A 138 638 212 HOH HOH . D 4 HOH A 139 639 120 HOH HOH . D 4 HOH A 140 640 238 HOH HOH . D 4 HOH A 141 641 75 HOH HOH . D 4 HOH A 142 642 123 HOH HOH . D 4 HOH A 143 643 100 HOH HOH . D 4 HOH A 144 644 55 HOH HOH . D 4 HOH A 145 645 160 HOH HOH . D 4 HOH A 146 646 295 HOH HOH . D 4 HOH A 147 647 223 HOH HOH . D 4 HOH A 148 648 48 HOH HOH . D 4 HOH A 149 649 166 HOH HOH . D 4 HOH A 150 650 111 HOH HOH . D 4 HOH A 151 651 95 HOH HOH . D 4 HOH A 152 652 76 HOH HOH . D 4 HOH A 153 653 18 HOH HOH . D 4 HOH A 154 654 104 HOH HOH . D 4 HOH A 155 655 34 HOH HOH . D 4 HOH A 156 656 207 HOH HOH . D 4 HOH A 157 657 261 HOH HOH . D 4 HOH A 158 658 176 HOH HOH . D 4 HOH A 159 659 105 HOH HOH . D 4 HOH A 160 660 32 HOH HOH . D 4 HOH A 161 661 50 HOH HOH . D 4 HOH A 162 662 133 HOH HOH . D 4 HOH A 163 663 108 HOH HOH . D 4 HOH A 164 664 117 HOH HOH . D 4 HOH A 165 665 9 HOH HOH . D 4 HOH A 166 666 312 HOH HOH . D 4 HOH A 167 667 183 HOH HOH . D 4 HOH A 168 668 43 HOH HOH . D 4 HOH A 169 669 45 HOH HOH . D 4 HOH A 170 670 290 HOH HOH . D 4 HOH A 171 671 69 HOH HOH . D 4 HOH A 172 672 303 HOH HOH . D 4 HOH A 173 673 28 HOH HOH . D 4 HOH A 174 674 288 HOH HOH . D 4 HOH A 175 675 155 HOH HOH . D 4 HOH A 176 676 195 HOH HOH . D 4 HOH A 177 677 21 HOH HOH . D 4 HOH A 178 678 5 HOH HOH . D 4 HOH A 179 679 240 HOH HOH . D 4 HOH A 180 680 81 HOH HOH . D 4 HOH A 181 681 297 HOH HOH . D 4 HOH A 182 682 161 HOH HOH . D 4 HOH A 183 683 247 HOH HOH . D 4 HOH A 184 684 136 HOH HOH . D 4 HOH A 185 685 109 HOH HOH . D 4 HOH A 186 686 110 HOH HOH . D 4 HOH A 187 687 287 HOH HOH . D 4 HOH A 188 688 236 HOH HOH . D 4 HOH A 189 689 213 HOH HOH . D 4 HOH A 190 690 68 HOH HOH . D 4 HOH A 191 691 52 HOH HOH . D 4 HOH A 192 692 279 HOH HOH . D 4 HOH A 193 693 241 HOH HOH . D 4 HOH A 194 694 122 HOH HOH . D 4 HOH A 195 695 209 HOH HOH . D 4 HOH A 196 696 6 HOH HOH . D 4 HOH A 197 697 147 HOH HOH . D 4 HOH A 198 698 42 HOH HOH . D 4 HOH A 199 699 205 HOH HOH . D 4 HOH A 200 700 206 HOH HOH . D 4 HOH A 201 701 165 HOH HOH . D 4 HOH A 202 702 107 HOH HOH . D 4 HOH A 203 703 292 HOH HOH . D 4 HOH A 204 704 179 HOH HOH . D 4 HOH A 205 705 125 HOH HOH . D 4 HOH A 206 706 127 HOH HOH . D 4 HOH A 207 707 300 HOH HOH . D 4 HOH A 208 708 178 HOH HOH . D 4 HOH A 209 709 186 HOH HOH . D 4 HOH A 210 710 137 HOH HOH . D 4 HOH A 211 711 302 HOH HOH . D 4 HOH A 212 712 138 HOH HOH . D 4 HOH A 213 713 60 HOH HOH . D 4 HOH A 214 714 225 HOH HOH . D 4 HOH A 215 715 99 HOH HOH . D 4 HOH A 216 716 269 HOH HOH . D 4 HOH A 217 717 97 HOH HOH . D 4 HOH A 218 718 285 HOH HOH . D 4 HOH A 219 719 275 HOH HOH . D 4 HOH A 220 720 158 HOH HOH . D 4 HOH A 221 721 222 HOH HOH . D 4 HOH A 222 722 37 HOH HOH . D 4 HOH A 223 723 304 HOH HOH . D 4 HOH A 224 724 124 HOH HOH . D 4 HOH A 225 725 305 HOH HOH . D 4 HOH A 226 726 10 HOH HOH . D 4 HOH A 227 727 202 HOH HOH . D 4 HOH A 228 728 157 HOH HOH . D 4 HOH A 229 729 231 HOH HOH . D 4 HOH A 230 730 192 HOH HOH . D 4 HOH A 231 731 243 HOH HOH . D 4 HOH A 232 732 65 HOH HOH . D 4 HOH A 233 733 91 HOH HOH . D 4 HOH A 234 734 283 HOH HOH . D 4 HOH A 235 735 214 HOH HOH . D 4 HOH A 236 736 254 HOH HOH . D 4 HOH A 237 737 272 HOH HOH . D 4 HOH A 238 738 298 HOH HOH . D 4 HOH A 239 739 129 HOH HOH . D 4 HOH A 240 740 276 HOH HOH . D 4 HOH A 241 741 307 HOH HOH . D 4 HOH A 242 742 71 HOH HOH . D 4 HOH A 243 743 215 HOH HOH . D 4 HOH A 244 744 278 HOH HOH . D 4 HOH A 245 745 284 HOH HOH . D 4 HOH A 246 746 251 HOH HOH . D 4 HOH A 247 747 268 HOH HOH . D 4 HOH A 248 748 242 HOH HOH . D 4 HOH A 249 749 273 HOH HOH . D 4 HOH A 250 750 313 HOH HOH . D 4 HOH A 251 751 72 HOH HOH . D 4 HOH A 252 752 229 HOH HOH . D 4 HOH A 253 753 274 HOH HOH . D 4 HOH A 254 754 221 HOH HOH . D 4 HOH A 255 755 46 HOH HOH . D 4 HOH A 256 756 199 HOH HOH . D 4 HOH A 257 757 146 HOH HOH . D 4 HOH A 258 758 301 HOH HOH . D 4 HOH A 259 759 49 HOH HOH . D 4 HOH A 260 760 131 HOH HOH . D 4 HOH A 261 761 145 HOH HOH . D 4 HOH A 262 762 159 HOH HOH . D 4 HOH A 263 763 277 HOH HOH . D 4 HOH A 264 764 248 HOH HOH . D 4 HOH A 265 765 121 HOH HOH . D 4 HOH A 266 766 204 HOH HOH . D 4 HOH A 267 767 226 HOH HOH . D 4 HOH A 268 768 96 HOH HOH . D 4 HOH A 269 769 306 HOH HOH . D 4 HOH A 270 770 263 HOH HOH . D 4 HOH A 271 771 152 HOH HOH . D 4 HOH A 272 772 151 HOH HOH . D 4 HOH A 273 773 182 HOH HOH . D 4 HOH A 274 774 230 HOH HOH . D 4 HOH A 275 775 220 HOH HOH . D 4 HOH A 276 776 185 HOH HOH . D 4 HOH A 277 777 311 HOH HOH . D 4 HOH A 278 778 237 HOH HOH . D 4 HOH A 279 779 271 HOH HOH . D 4 HOH A 280 780 294 HOH HOH . D 4 HOH A 281 781 219 HOH HOH . D 4 HOH A 282 782 203 HOH HOH . D 4 HOH A 283 783 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 47Y . . . C 3 -20.811 -2.066 -3.468 1 36.9 ? C4 47Y 402 A 1 HETATM 2 N N1 47Y . . . C 3 -20.211 -3.401 -3.301 1 39.46 ? N1 47Y 402 A 1 HETATM 3 C C9 47Y . . . C 3 -18.991 -3.735 -3.807 1 31.92 ? C9 47Y 402 A 1 HETATM 4 C C10 47Y . . . C 3 -18.509 -5.048 -3.528 1 31.04 ? C10 47Y 402 A 1 HETATM 5 C C11 47Y . . . C 3 -17.315 -5.799 -3.778 1 29.95 ? C11 47Y 402 A 1 HETATM 6 C C12 47Y . . . C 3 -16.139 -5.284 -4.556 1 31.95 ? C12 47Y 402 A 1 HETATM 7 N N3 47Y . . . C 3 -18.247 -2.887 -4.571 1 37.49 ? N3 47Y 402 A 1 HETATM 8 C C2 47Y . . . C 3 -19.347 -5.869 -2.793 1 33.22 ? C2 47Y 402 A 1 HETATM 9 O O 47Y . . . C 3 -18.73 -7.069 -2.592 1 33.53 ? O 47Y 402 A 1 HETATM 10 C C1 47Y . . . C 3 -17.494 -7 -3.195 1 31.03 ? C1 47Y 402 A 1 HETATM 11 C C 47Y . . . C 3 -16.652 -8.213 -3.07 1 32.31 ? C 47Y 402 A 1 HETATM 12 C C3 47Y . . . C 3 -20.926 -4.323 -2.589 1 36.39 ? C3 47Y 402 A 1 HETATM 13 N N 47Y . . . C 3 -20.565 -5.54 -2.317 1 42.73 ? N 47Y 402 A 1 # _model_server_stats.io_time_ms 131 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 13 #