data_6SH2
#
_model_server_result.job_id            cZm4qmgyvL1-hpQ7q_UdRQ 
_model_server_result.datetime_utc      '2024-11-13 13:22:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sh2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    6SH2 
#
_exptl.entry_id    6SH2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6SH2 
_cell.length_a            109.267 
_cell.length_b            109.267 
_cell.length_c            112.579 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SH2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 3 AAA CYS 56 1_555 A SG CYS 8 AAA CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf2 A SG CYS 26 AAA CYS 79 1_555 A SG CYS 681 AAA CYS 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 34 AAA CYS 87 1_555 A SG CYS 641 AAA CYS 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 89 AAA CYS 142 1_555 A SG CYS 357 AAA CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf5 A SG CYS 180 AAA CYS 233 1_555 A SG CYS 188 AAA CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 A SG CYS 567 AAA CYS 620 1_555 A SG CYS 693 AAA CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 91 AAA ASN 144 1_555 C C1 NAG . AAA NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale2 A ND2 ASN 231 AAA ASN 284 1_555 E C1 NAG . AAA NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 271 AAA ASN 324 1_555 D C1 NAG . AAA NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? 
covale ? covale4 A ND2 ASN 574 AAA ASN 627 1_555 F C1 NAG . AAA NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
metalc ? metalc1 A NE2 HIS 530 AAA HIS 583 1_555 G ZN ZN . AAA ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc2 A NE2 HIS 534 AAA HIS 587 1_555 G ZN ZN . AAA ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc3 A OE1 GLU 593 AAA GLU 646 1_555 G ZN ZN . AAA ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc4 B O ALA 1 DDD ALA -1 1_555 G ZN ZN . AAA ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6SH2 
_atom_sites.fract_transf_matrix[1][1]    0.009152 
_atom_sites.fract_transf_matrix[1][2]    0.005284 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010568 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008883 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG AAA 1 801 750 NAG NAG . 
D 3 NAG AAA 1 802 751 NAG NAG . 
E 3 NAG AAA 1 803 752 NAG NAG . 
F 3 NAG AAA 1 804 753 NAG NAG . 
G 4 ZN AAA 1 805 1 ZN ZN . 
H 5 CL AAA 1 806 1 CL CL . 
I 5 CL AAA 1 807 2 CL CL . 
J 6 HOH AAA 1 901 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . D 3 -15.271 11.105 -5.583 1 146.9 ? C1 NAG 802 AAA 1 
HETATM 2 C C2 NAG . . . D 3 -16.577 10.439 -6.021 1 147.43 ? C2 NAG 802 AAA 1 
HETATM 3 C C3 NAG . . . D 3 -16.874 9.271 -5.075 1 147.41 ? C3 NAG 802 AAA 1 
HETATM 4 C C4 NAG . . . D 3 -15.697 8.305 -5.026 1 147.47 ? C4 NAG 802 AAA 1 
HETATM 5 C C5 NAG . . . D 3 -14.403 9.051 -4.706 1 146.8 ? C5 NAG 802 AAA 1 
HETATM 6 C C6 NAG . . . D 3 -13.187 8.129 -4.762 1 145.74 ? C6 NAG 802 AAA 1 
HETATM 7 C C7 NAG . . . D 3 -18.738 11.546 -5.38 1 148.45 ? C7 NAG 802 AAA 1 
HETATM 8 C C8 NAG . . . D 3 -19.657 12.669 -5.76 1 147.86 ? C8 NAG 802 AAA 1 
HETATM 9 N N2 NAG . . . D 3 -17.642 11.438 -6.144 1 147.68 ? N2 NAG 802 AAA 1 
HETATM 10 O O3 NAG . . . D 3 -18.045 8.565 -5.501 1 147.13 ? O3 NAG 802 AAA 1 
HETATM 11 O O4 NAG . . . D 3 -15.946 7.307 -4.029 1 147.31 ? O4 NAG 802 AAA 1 
HETATM 12 O O5 NAG . . . D 3 -14.225 10.128 -5.63 1 147.54 ? O5 NAG 802 AAA 1 
HETATM 13 O O6 NAG . . . D 3 -13.009 7.627 -6.091 1 145.06 ? O6 NAG 802 AAA 1 
HETATM 14 O O7 NAG . . . D 3 -19.011 10.814 -4.444 1 148.32 ? O7 NAG 802 AAA 1 
HETATM 15 H H1 NAG . . . D 3 -15.399 11.453 -4.546 1 147.18 ? H1 NAG 802 AAA 1 
HETATM 16 H H2 NAG . . . D 3 -16.408 10.014 -7.023 1 147.37 ? H2 NAG 802 AAA 1 
HETATM 17 H H3 NAG . . . D 3 -17.013 9.665 -4.059 1 147.38 ? H3 NAG 802 AAA 1 
HETATM 18 H H4 NAG . . . D 3 -15.599 7.829 -6.011 1 147.3 ? H4 NAG 802 AAA 1 
HETATM 19 H H5 NAG . . . D 3 -14.48 9.453 -3.686 1 146.87 ? H5 NAG 802 AAA 1 
HETATM 20 H H61 NAG . . . D 3 -13.319 7.296 -4.069 1 145.83 ? H61 NAG 802 AAA 1 
HETATM 21 H H62 NAG . . . D 3 -12.296 8.682 -4.459 1 145.83 ? H62 NAG 802 AAA 1 
HETATM 22 H H81 NAG . . . D 3 -19.984 12.538 -6.759 1 147.98 ? H81 NAG 802 AAA 1 
HETATM 23 H H82 NAG . . . D 3 -20.494 12.674 -5.111 1 147.98 ? H82 NAG 802 AAA 1 
HETATM 24 H H83 NAG . . . D 3 -19.137 13.586 -5.673 1 147.87 ? H83 NAG 802 AAA 1 
HETATM 25 H HN2 NAG . . . D 3 -17.53 12.109 -6.893 1 147.79 ? HN2 NAG 802 AAA 1 
HETATM 26 H HO3 NAG . . . D 3 -18.24 7.855 -4.87 0 147.82 ? HO3 NAG 802 AAA 1 
HETATM 27 H HO4 NAG . . . D 3 -15.214 6.674 -4.015 0 148.15 ? HO4 NAG 802 AAA 1 
HETATM 28 H HO6 NAG . . . D 3 -12.241 7.039 -6.115 0 145.73 ? HO6 NAG 802 AAA 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           28 
#