data_6SH2 # _model_server_result.job_id rEsgnWbFXp1fkvdqzFRVzw _model_server_result.datetime_utc '2024-11-13 13:24:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sh2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":803}' # _entry.id 6SH2 # _exptl.entry_id 6SH2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SH2 _cell.length_a 109.267 _cell.length_b 109.267 _cell.length_c 112.579 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SH2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 AAA CYS 56 1_555 A SG CYS 8 AAA CYS 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 26 AAA CYS 79 1_555 A SG CYS 681 AAA CYS 734 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 34 AAA CYS 87 1_555 A SG CYS 641 AAA CYS 694 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 89 AAA CYS 142 1_555 A SG CYS 357 AAA CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 A SG CYS 180 AAA CYS 233 1_555 A SG CYS 188 AAA CYS 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 A SG CYS 567 AAA CYS 620 1_555 A SG CYS 693 AAA CYS 746 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 91 AAA ASN 144 1_555 C C1 NAG . AAA NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale2 A ND2 ASN 231 AAA ASN 284 1_555 E C1 NAG . AAA NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 271 AAA ASN 324 1_555 D C1 NAG . AAA NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 A ND2 ASN 574 AAA ASN 627 1_555 F C1 NAG . AAA NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? metalc ? metalc1 A NE2 HIS 530 AAA HIS 583 1_555 G ZN ZN . AAA ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 A NE2 HIS 534 AAA HIS 587 1_555 G ZN ZN . AAA ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc3 A OE1 GLU 593 AAA GLU 646 1_555 G ZN ZN . AAA ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc4 B O ALA 1 DDD ALA -1 1_555 G ZN ZN . AAA ZN 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6SH2 _atom_sites.fract_transf_matrix[1][1] 0.009152 _atom_sites.fract_transf_matrix[1][2] 0.005284 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010568 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG AAA 1 801 750 NAG NAG . D 3 NAG AAA 1 802 751 NAG NAG . E 3 NAG AAA 1 803 752 NAG NAG . F 3 NAG AAA 1 804 753 NAG NAG . G 4 ZN AAA 1 805 1 ZN ZN . H 5 CL AAA 1 806 1 CL CL . I 5 CL AAA 1 807 2 CL CL . J 6 HOH AAA 1 901 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 5.164 33.852 5.157 1 135.55 ? C1 NAG 803 AAA 1 HETATM 2 C C2 NAG . . . E 3 6.372 33.019 4.727 1 138.37 ? C2 NAG 803 AAA 1 HETATM 3 C C3 NAG . . . E 3 7.472 33.913 4.154 1 141.43 ? C3 NAG 803 AAA 1 HETATM 4 C C4 NAG . . . E 3 6.923 34.86 3.09 1 142.36 ? C4 NAG 803 AAA 1 HETATM 5 C C5 NAG . . . E 3 5.64 35.553 3.549 1 141.61 ? C5 NAG 803 AAA 1 HETATM 6 C C6 NAG . . . E 3 5.017 36.354 2.41 1 140.62 ? C6 NAG 803 AAA 1 HETATM 7 C C7 NAG . . . E 3 7.314 32.604 6.993 1 136.3 ? C7 NAG 803 AAA 1 HETATM 8 C C8 NAG . . . E 3 7.724 31.523 7.95 1 135.35 ? C8 NAG 803 AAA 1 HETATM 9 N N2 NAG . . . E 3 6.855 32.168 5.813 1 137.44 ? N2 NAG 803 AAA 1 HETATM 10 O O3 NAG . . . E 3 8.49 33.095 3.569 1 142.66 ? O3 NAG 803 AAA 1 HETATM 11 O O4 NAG . . . E 3 7.918 35.844 2.78 1 141.89 ? O4 NAG 803 AAA 1 HETATM 12 O O5 NAG . . . E 3 4.696 34.587 4.023 1 139.22 ? O5 NAG 803 AAA 1 HETATM 13 O O6 NAG . . . E 3 3.795 36.959 2.848 1 139.12 ? O6 NAG 803 AAA 1 HETATM 14 O O7 NAG . . . E 3 7.402 33.782 7.301 1 134.39 ? O7 NAG 803 AAA 1 HETATM 15 H H1 NAG . . . E 3 5.495 34.564 5.925 1 136.98 ? H1 NAG 803 AAA 1 HETATM 16 H H2 NAG . . . E 3 6.037 32.354 3.918 1 138.24 ? H2 NAG 803 AAA 1 HETATM 17 H H3 NAG . . . E 3 7.904 34.52 4.961 1 141.26 ? H3 NAG 803 AAA 1 HETATM 18 H H4 NAG . . . E 3 6.696 34.273 2.189 1 141.97 ? H4 NAG 803 AAA 1 HETATM 19 H H5 NAG . . . E 3 5.895 36.25 4.36 1 141.12 ? H5 NAG 803 AAA 1 HETATM 20 H H61 NAG . . . E 3 4.817 35.693 1.563 1 140.51 ? H61 NAG 803 AAA 1 HETATM 21 H H62 NAG . . . E 3 5.71 37.13 2.079 1 140.52 ? H62 NAG 803 AAA 1 HETATM 22 H H81 NAG . . . E 3 8.497 30.943 7.517 1 135.6 ? H81 NAG 803 AAA 1 HETATM 23 H H82 NAG . . . E 3 8.071 31.961 8.849 1 135.6 ? H82 NAG 803 AAA 1 HETATM 24 H H83 NAG . . . E 3 6.891 30.902 8.158 1 135.6 ? H83 NAG 803 AAA 1 HETATM 25 H HN2 NAG . . . E 3 6.824 31.171 5.651 1 137.34 ? HN2 NAG 803 AAA 1 HETATM 26 H HO3 NAG . . . E 3 9.204 33.653 3.234 0 143.92 ? HO3 NAG 803 AAA 1 HETATM 27 H HO4 NAG . . . E 3 7.6 36.419 2.073 0 142.68 ? HO4 NAG 803 AAA 1 HETATM 28 H HO6 NAG . . . E 3 3.408 37.463 2.114 0 139.58 ? HO6 NAG 803 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 28 #