data_6SHQ # _model_server_result.job_id dV_UKGoou0hG5u6MYohuTg _model_server_result.datetime_utc '2025-01-10 12:38:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6shq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 6SHQ # _exptl.entry_id 6SHQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SHQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 6SHQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AMP A 1 501 501 AMP AMP . F 2 AMP D 1 501 501 AMP AMP . G 2 AMP C 1 501 501 AMP AMP . H 2 AMP B 1 501 501 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . E 2 116.539 94.94 86.913 1 123.16 ? P AMP 501 A 1 HETATM 2 O O1P AMP . . . E 2 116.734 96.291 86.28 1 123.16 ? O1P AMP 501 A 1 HETATM 3 O O2P AMP . . . E 2 117.787 94.102 87.005 1 123.16 ? O2P AMP 501 A 1 HETATM 4 O O3P AMP . . . E 2 115.705 94.92 88.164 1 123.16 ? O3P AMP 501 A 1 HETATM 5 O O5' AMP . . . E 2 115.662 94.198 85.816 1 123.16 ? O5' AMP 501 A 1 HETATM 6 C C5' AMP . . . E 2 116.199 93.921 84.52 1 123.16 ? C5' AMP 501 A 1 HETATM 7 C C4' AMP . . . E 2 115.383 92.865 83.836 1 123.16 ? C4' AMP 501 A 1 HETATM 8 O O4' AMP . . . E 2 115.516 91.61 84.562 1 123.16 ? O4' AMP 501 A 1 HETATM 9 C C3' AMP . . . E 2 113.897 93.148 83.729 1 123.16 ? C3' AMP 501 A 1 HETATM 10 O O3' AMP . . . E 2 113.393 92.671 82.497 1 123.16 ? O3' AMP 501 A 1 HETATM 11 C C2' AMP . . . E 2 113.326 92.359 84.903 1 123.16 ? C2' AMP 501 A 1 HETATM 12 O O2' AMP . . . E 2 111.95 92.005 84.789 1 123.16 ? O2' AMP 501 A 1 HETATM 13 C C1' AMP . . . E 2 114.219 91.122 84.868 1 123.16 ? C1' AMP 501 A 1 HETATM 14 N N9 AMP . . . E 2 114.298 90.373 86.128 1 123.16 ? N9 AMP 501 A 1 HETATM 15 C C8 AMP . . . E 2 114.214 90.795 87.4 1 123.16 ? C8 AMP 501 A 1 HETATM 16 N N7 AMP . . . E 2 114.346 89.747 88.248 1 123.16 ? N7 AMP 501 A 1 HETATM 17 C C5 AMP . . . E 2 114.526 88.642 87.508 1 123.16 ? C5 AMP 501 A 1 HETATM 18 C C6 AMP . . . E 2 114.728 87.202 87.749 1 123.16 ? C6 AMP 501 A 1 HETATM 19 N N6 AMP . . . E 2 114.771 86.732 89.009 1 123.16 ? N6 AMP 501 A 1 HETATM 20 N N1 AMP . . . E 2 114.86 86.394 86.678 1 123.16 ? N1 AMP 501 A 1 HETATM 21 C C2 AMP . . . E 2 114.82 86.857 85.419 1 123.16 ? C2 AMP 501 A 1 HETATM 22 N N3 AMP . . . E 2 114.639 88.152 85.131 1 123.16 ? N3 AMP 501 A 1 HETATM 23 C C4 AMP . . . E 2 114.496 89.067 86.112 1 123.16 ? C4 AMP 501 A 1 HETATM 24 H "H5'1" AMP . . . E 2 117.221 93.59 84.632 1 123.16 ? "H5'1" AMP 501 A 1 HETATM 25 H "H5'2" AMP . . . E 2 116.19 94.831 83.921 1 123.16 ? "H5'2" AMP 501 A 1 HETATM 26 H H4' AMP . . . E 2 115.788 92.728 82.811 1 123.16 ? H4' AMP 501 A 1 HETATM 27 H H3' AMP . . . E 2 113.704 94.226 83.878 1 123.16 ? H3' AMP 501 A 1 HETATM 28 H HO3' AMP . . . E 2 112.449 92.869 82.44 1 123.16 ? HO3' AMP 501 A 1 HETATM 29 H H2' AMP . . . E 2 113.485 92.932 85.812 1 123.16 ? H2' AMP 501 A 1 HETATM 30 H HO2' AMP . . . E 2 111.462 92.432 85.506 1 123.16 ? HO2' AMP 501 A 1 HETATM 31 H H1' AMP . . . E 2 113.89 90.47 84.075 1 123.16 ? H1' AMP 501 A 1 HETATM 32 H H8 AMP . . . E 2 114.063 91.819 87.709 1 123.16 ? H8 AMP 501 A 1 HETATM 33 H HN61 AMP . . . E 2 114.659 87.376 89.776 1 123.16 ? HN61 AMP 501 A 1 HETATM 34 H HN62 AMP . . . E 2 114.906 85.748 89.186 1 123.16 ? HN62 AMP 501 A 1 HETATM 35 H H2 AMP . . . E 2 114.938 86.158 84.603 1 123.16 ? H2 AMP 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 424 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #