data_6SII # _model_server_result.job_id J9kRXCF0BLs6yaS8pSflGw _model_server_result.datetime_utc '2025-01-10 08:11:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sii # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6SII # _exptl.entry_id 6SII _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.888 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(3-chlorophenyl)methyl]-1-(1~{H}-indol-3-ylmethyl)piperidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6SII _cell.length_a 61.631 _cell.length_b 61.631 _cell.length_c 342.247 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SII _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 Cl N3' _chem_comp.formula_weight 353.888 _chem_comp.id LEZ _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(3-chlorophenyl)methyl]-1-(1~{H}-indol-3-ylmethyl)piperidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C22 LEZ doub 205 n y C21 C20 LEZ sing 206 n y C22 C23 LEZ sing 207 n y C20 C19 LEZ doub 208 n y C23 C24 LEZ doub 209 n y C23 CL LEZ sing 210 n n C19 C24 LEZ sing 211 n y C19 C18 LEZ sing 212 n n N17 C18 LEZ sing 213 n n N17 C16 LEZ sing 214 n n C15 C16 LEZ sing 215 n n C15 C14 LEZ sing 216 n n C16 C11 LEZ sing 217 n n C14 N13 LEZ sing 218 n n C1 C2 LEZ doub 219 n y C1 C6 LEZ sing 220 n y C2 C3 LEZ sing 221 n y C6 C5 LEZ doub 222 n y C11 C12 LEZ sing 223 n n C3 C4 LEZ doub 224 n y C5 C4 LEZ sing 225 n y C5 N9 LEZ sing 226 n y N13 C12 LEZ sing 227 n n N13 C10 LEZ sing 228 n n C4 C7 LEZ sing 229 n y N9 C8 LEZ sing 230 n y C7 C8 LEZ doub 231 n y C7 C10 LEZ sing 232 n n C1 H1 LEZ sing 233 n n C2 H2 LEZ sing 234 n n C3 H3 LEZ sing 235 n n C11 H4 LEZ sing 236 n n C11 H5 LEZ sing 237 n n C12 H6 LEZ sing 238 n n C12 H7 LEZ sing 239 n n C14 H8 LEZ sing 240 n n C14 H9 LEZ sing 241 n n C15 H10 LEZ sing 242 n n C15 H11 LEZ sing 243 n n C16 H12 LEZ sing 244 n n C18 H13 LEZ sing 245 n n C18 H14 LEZ sing 246 n n C20 H15 LEZ sing 247 n n C21 H16 LEZ sing 248 n n C22 H17 LEZ sing 249 n n C24 H18 LEZ sing 250 n n C6 H19 LEZ sing 251 n n C8 H20 LEZ sing 252 n n N9 H21 LEZ sing 253 n n C10 H22 LEZ sing 254 n n C10 H23 LEZ sing 255 n n N17 H25 LEZ sing 256 n n # _atom_sites.entry_id 6SII _atom_sites.fract_transf_matrix[1][1] 0.016226 _atom_sites.fract_transf_matrix[1][2] 0.009368 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018736 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002922 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LEZ A 1 401 401 LEZ LI1 . C 3 GOL A 1 402 501 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LEZ . . . B 2 16.224 19.44 -16.466 0.86 113.16 ? C1 LEZ 401 A 1 HETATM 2 C C2 LEZ . . . B 2 14.897 19.009 -16.412 0.86 112.56 ? C2 LEZ 401 A 1 HETATM 3 C C3 LEZ . . . B 2 14.583 17.725 -15.986 0.86 110.94 ? C3 LEZ 401 A 1 HETATM 4 C C11 LEZ . . . B 2 14.434 11.038 -15.51 0.86 120.49 ? C11 LEZ 401 A 1 HETATM 5 C C12 LEZ . . . B 2 15.219 12.296 -15.139 0.86 119.09 ? C12 LEZ 401 A 1 HETATM 6 C C14 LEZ . . . B 2 13.591 13.157 -16.721 0.86 117.66 ? C14 LEZ 401 A 1 HETATM 7 C C15 LEZ . . . B 2 13.914 12.054 -17.726 0.86 118.8 ? C15 LEZ 401 A 1 HETATM 8 C C16 LEZ . . . B 2 14.441 10.822 -17.012 0.86 120.68 ? C16 LEZ 401 A 1 HETATM 9 C C18 LEZ . . . B 2 13.941 8.658 -18.115 0.86 125.16 ? C18 LEZ 401 A 1 HETATM 10 C C19 LEZ . . . B 2 12.709 7.967 -18.649 0.86 126.12 ? C19 LEZ 401 A 1 HETATM 11 C C20 LEZ . . . B 2 12.775 7.146 -19.767 0.86 124.48 ? C20 LEZ 401 A 1 HETATM 12 C C21 LEZ . . . B 2 11.621 6.629 -20.336 0.86 123.56 ? C21 LEZ 401 A 1 HETATM 13 C C22 LEZ . . . B 2 10.381 6.92 -19.795 0.86 124.51 ? C22 LEZ 401 A 1 HETATM 14 C C23 LEZ . . . B 2 10.325 7.697 -18.657 0.86 126.47 ? C23 LEZ 401 A 1 HETATM 15 C C24 LEZ . . . B 2 11.465 8.219 -18.077 0.86 126.91 ? C24 LEZ 401 A 1 HETATM 16 C C4 LEZ . . . B 2 15.605 16.858 -15.601 0.86 111.47 ? C4 LEZ 401 A 1 HETATM 17 C C5 LEZ . . . B 2 16.937 17.314 -15.652 0.86 111.52 ? C5 LEZ 401 A 1 HETATM 18 C C6 LEZ . . . B 2 17.26 18.598 -16.086 0.86 112.11 ? C6 LEZ 401 A 1 HETATM 19 C C7 LEZ . . . B 2 15.638 15.519 -15.084 0.86 112.92 ? C7 LEZ 401 A 1 HETATM 20 C C8 LEZ . . . B 2 16.948 15.244 -14.819 0.86 113.05 ? C8 LEZ 401 A 1 HETATM 21 N N9 LEZ . . . B 2 17.736 16.308 -15.171 0.86 111.97 ? N9 LEZ 401 A 1 HETATM 22 C C10 LEZ . . . B 2 14.466 14.586 -14.972 0.86 114.25 ? C10 LEZ 401 A 1 HETATM 23 N N13 LEZ . . . B 2 14.76 13.484 -15.886 0.86 116.88 ? N13 LEZ 401 A 1 HETATM 24 N N17 LEZ . . . B 2 13.601 9.611 -17.053 0.86 122.89 ? N17 LEZ 401 A 1 HETATM 25 CL CL LEZ . . . B 2 8.783 8.01 -17.911 0.86 127.21 ? CL LEZ 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 25 #