data_6SIU # _model_server_result.job_id LFzS0bh8SqtwN_MQ84-BmQ _model_server_result.datetime_utc '2024-11-13 20:38:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6siu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":203}' # _entry.id 6SIU # _exptl.entry_id 6SIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.238 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{S},4~{R},5~{R})-5-[4-(acetamidomethyl)-1,2,3-triazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SIU _cell.length_a 92.241 _cell.length_b 102.213 _cell.length_c 129.273 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 274 A CYS 3755 1_555 S C56 LJN . D LJN 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.794 ? covale ? covale2 A SG CYS 274 A CYS 3755 1_555 S C56 LJN . D LJN 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.791 ? covale ? covale3 B SG CYS 274 B CYS 3755 1_555 O C56 LJN . C LJN 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.804 ? covale ? covale4 B SG CYS 274 B CYS 3755 1_555 O C56 LJN . C LJN 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.839 ? covale ? covale5 C OH TYR 33 C TYR 32 1_555 O P14 LJN . C LJN 203 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.673 ? covale ? covale6 C OH TYR 33 C TYR 32 1_555 O P14 LJN . C LJN 203 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.668 ? covale ? covale7 D OH TYR 33 D TYR 32 1_555 S P14 LJN . D LJN 203 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.66 ? covale ? covale8 D OH TYR 33 D TYR 32 1_555 S P14 LJN . D LJN 203 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.656 ? # _chem_comp.formula 'C10 H17 N4 O8 P' _chem_comp.formula_weight 352.238 _chem_comp.id LJN _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{S},4~{R},5~{R})-5-[4-(acetamidomethyl)-1,2,3-triazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N28 N27 LJN doub 252 n y N28 C29 LJN sing 253 n y N27 N26 LJN sing 254 n y C29 C31 LJN sing 255 n n C29 C30 LJN doub 256 n y C31 N32 LJN sing 257 n n O35 C33 LJN doub 258 n n N26 C30 LJN sing 259 n y N26 C22 LJN sing 260 n n C33 N32 LJN sing 261 n n C33 C56 LJN sing 262 n n O25 C21 LJN sing 263 n n C21 C22 LJN sing 264 n n C21 C20 LJN sing 265 n n C22 O23 LJN sing 266 n n C20 O24 LJN sing 267 n n C20 C19 LJN sing 268 n n O23 C19 LJN sing 269 n n C19 C18 LJN sing 270 n n O17 C18 LJN sing 271 n n O17 P14 LJN sing 272 n n O15 P14 LJN sing 273 n n P14 O16 LJN doub 274 n n C18 H1 LJN sing 275 n n C18 H2 LJN sing 276 n n C19 H3 LJN sing 277 n n C20 H4 LJN sing 278 n n C21 H5 LJN sing 279 n n C22 H6 LJN sing 280 n n C30 H7 LJN sing 281 n n C31 H8 LJN sing 282 n n C31 H9 LJN sing 283 n n C56 H10 LJN sing 284 n n C56 H11 LJN sing 285 n n C56 H12 LJN sing 286 n n N32 H13 LJN sing 287 n n O15 H14 LJN sing 288 n n O24 H16 LJN sing 289 n n O25 H17 LJN sing 290 n n P14 O1 LJN sing 291 n n O1 H15 LJN sing 292 n n # _atom_sites.entry_id 6SIU _atom_sites.fract_transf_matrix[1][1] 0.010841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 3801 1 SO4 SO4 . F 3 SO4 A 1 3802 3 SO4 SO4 . G 3 SO4 A 1 3803 6 SO4 SO4 . H 3 SO4 A 1 3804 10 SO4 SO4 . I 3 SO4 B 1 3801 2 SO4 SO4 . J 3 SO4 B 1 3802 4 SO4 SO4 . K 3 SO4 B 1 3803 5 SO4 SO4 . L 3 SO4 B 1 3804 11 SO4 SO4 . M 4 GDP C 1 201 201 GDP GDP . N 5 GOL C 1 202 301 GOL GOL . O 6 LJN C 1 203 32 LJN YXC . P 3 SO4 C 1 204 7 SO4 SO4 . Q 4 GDP D 1 201 201 GDP GDP . R 5 GOL D 1 202 301 GOL GOL . S 6 LJN D 1 203 32 LJN YXC . T 3 SO4 D 1 204 8 SO4 SO4 . U 7 HOH A 1 3901 62 HOH HOH . U 7 HOH A 2 3902 31 HOH HOH . U 7 HOH A 3 3903 103 HOH HOH . U 7 HOH A 4 3904 66 HOH HOH . U 7 HOH A 5 3905 19 HOH HOH . U 7 HOH A 6 3906 15 HOH HOH . U 7 HOH A 7 3907 93 HOH HOH . U 7 HOH A 8 3908 7 HOH HOH . U 7 HOH A 9 3909 6 HOH HOH . U 7 HOH A 10 3910 104 HOH HOH . U 7 HOH A 11 3911 110 HOH HOH . U 7 HOH A 12 3912 2 HOH HOH . U 7 HOH A 13 3913 75 HOH HOH . U 7 HOH A 14 3914 5 HOH HOH . U 7 HOH A 15 3915 54 HOH HOH . U 7 HOH A 16 3916 44 HOH HOH . U 7 HOH A 17 3917 86 HOH HOH . U 7 HOH A 18 3918 87 HOH HOH . U 7 HOH A 19 3919 56 HOH HOH . U 7 HOH A 20 3920 108 HOH HOH . U 7 HOH A 21 3921 16 HOH HOH . U 7 HOH A 22 3922 10 HOH HOH . U 7 HOH A 23 3923 18 HOH HOH . U 7 HOH A 24 3924 65 HOH HOH . U 7 HOH A 25 3925 57 HOH HOH . U 7 HOH A 26 3926 40 HOH HOH . U 7 HOH A 27 3927 105 HOH HOH . U 7 HOH A 28 3928 45 HOH HOH . U 7 HOH A 29 3929 106 HOH HOH . U 7 HOH A 30 3930 89 HOH HOH . U 7 HOH A 31 3931 109 HOH HOH . U 7 HOH A 32 3932 85 HOH HOH . V 7 HOH B 1 3901 77 HOH HOH . V 7 HOH B 2 3902 38 HOH HOH . V 7 HOH B 3 3903 94 HOH HOH . V 7 HOH B 4 3904 42 HOH HOH . V 7 HOH B 5 3905 102 HOH HOH . V 7 HOH B 6 3906 51 HOH HOH . V 7 HOH B 7 3907 20 HOH HOH . V 7 HOH B 8 3908 50 HOH HOH . V 7 HOH B 9 3909 35 HOH HOH . V 7 HOH B 10 3910 100 HOH HOH . V 7 HOH B 11 3911 9 HOH HOH . V 7 HOH B 12 3912 41 HOH HOH . V 7 HOH B 13 3913 32 HOH HOH . V 7 HOH B 14 3914 70 HOH HOH . V 7 HOH B 15 3915 21 HOH HOH . V 7 HOH B 16 3916 79 HOH HOH . V 7 HOH B 17 3917 1 HOH HOH . V 7 HOH B 18 3918 53 HOH HOH . V 7 HOH B 19 3919 29 HOH HOH . V 7 HOH B 20 3920 4 HOH HOH . V 7 HOH B 21 3921 49 HOH HOH . V 7 HOH B 22 3922 72 HOH HOH . V 7 HOH B 23 3923 78 HOH HOH . V 7 HOH B 24 3924 99 HOH HOH . V 7 HOH B 25 3925 92 HOH HOH . V 7 HOH B 26 3926 33 HOH HOH . V 7 HOH B 27 3927 55 HOH HOH . V 7 HOH B 28 3928 91 HOH HOH . V 7 HOH B 29 3929 34 HOH HOH . V 7 HOH B 30 3930 69 HOH HOH . V 7 HOH B 31 3931 74 HOH HOH . V 7 HOH B 32 3932 61 HOH HOH . V 7 HOH B 33 3933 8 HOH HOH . V 7 HOH B 34 3934 67 HOH HOH . V 7 HOH B 35 3935 52 HOH HOH . V 7 HOH B 36 3936 36 HOH HOH . V 7 HOH B 37 3937 60 HOH HOH . V 7 HOH B 38 3938 95 HOH HOH . V 7 HOH B 39 3939 68 HOH HOH . V 7 HOH B 40 3940 80 HOH HOH . V 7 HOH B 41 3941 96 HOH HOH . W 7 HOH C 1 301 27 HOH HOH . W 7 HOH C 2 302 3 HOH HOH . W 7 HOH C 3 303 47 HOH HOH . W 7 HOH C 4 304 81 HOH HOH . W 7 HOH C 5 305 107 HOH HOH . W 7 HOH C 6 306 26 HOH HOH . W 7 HOH C 7 307 39 HOH HOH . W 7 HOH C 8 308 14 HOH HOH . W 7 HOH C 9 309 46 HOH HOH . W 7 HOH C 10 310 73 HOH HOH . W 7 HOH C 11 311 17 HOH HOH . W 7 HOH C 12 312 30 HOH HOH . W 7 HOH C 13 313 23 HOH HOH . W 7 HOH C 14 314 28 HOH HOH . W 7 HOH C 15 315 25 HOH HOH . W 7 HOH C 16 316 58 HOH HOH . W 7 HOH C 17 317 97 HOH HOH . W 7 HOH C 18 318 59 HOH HOH . W 7 HOH C 19 319 63 HOH HOH . X 7 HOH D 1 301 76 HOH HOH . X 7 HOH D 2 302 48 HOH HOH . X 7 HOH D 3 303 24 HOH HOH . X 7 HOH D 4 304 83 HOH HOH . X 7 HOH D 5 305 82 HOH HOH . X 7 HOH D 6 306 98 HOH HOH . X 7 HOH D 7 307 90 HOH HOH . X 7 HOH D 8 308 64 HOH HOH . X 7 HOH D 9 309 37 HOH HOH . X 7 HOH D 10 310 12 HOH HOH . X 7 HOH D 11 311 22 HOH HOH . X 7 HOH D 12 312 88 HOH HOH . X 7 HOH D 13 313 13 HOH HOH . X 7 HOH D 14 314 43 HOH HOH . X 7 HOH D 15 315 71 HOH HOH . X 7 HOH D 16 316 84 HOH HOH . X 7 HOH D 17 317 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 LJN . A . O 6 -15.342 6.046 -51.281 0.5 52.06 ? C18 LJN 203 C 1 HETATM 2 C C18 LJN . B . O 6 -13.682 5.287 -51.517 0.5 51.86 ? C18 LJN 203 C 1 HETATM 3 C C19 LJN . A . O 6 -14.794 6.454 -52.64 0.5 55.93 ? C19 LJN 203 C 1 HETATM 4 C C19 LJN . B . O 6 -13.63 6.07 -52.837 0.5 55 ? C19 LJN 203 C 1 HETATM 5 C C20 LJN . A . O 6 -15.892 6.891 -53.555 0.5 57.93 ? C20 LJN 203 C 1 HETATM 6 C C20 LJN . B . O 6 -14.892 6.871 -53.013 0.5 57.59 ? C20 LJN 203 C 1 HETATM 7 C C21 LJN . A . O 6 -15.165 6.892 -54.844 0.5 60.69 ? C21 LJN 203 C 1 HETATM 8 C C21 LJN . B . O 6 -15.662 6.17 -54.077 0.5 55.75 ? C21 LJN 203 C 1 HETATM 9 C C22 LJN . A . O 6 -14.294 5.688 -54.76 0.5 57.56 ? C22 LJN 203 C 1 HETATM 10 C C22 LJN . B . O 6 -14.603 5.558 -54.912 0.5 58.01 ? C22 LJN 203 C 1 HETATM 11 C C29 LJN . A . O 6 -16.151 2.947 -56.12 0.5 61.31 ? C29 LJN 203 C 1 HETATM 12 C C29 LJN . B . O 6 -15.948 2.471 -56.122 0.5 61.46 ? C29 LJN 203 C 1 HETATM 13 C C30 LJN . A . O 6 -15.782 3.68 -54.893 0.5 58.69 ? C30 LJN 203 C 1 HETATM 14 C C30 LJN . B . O 6 -15.589 3.268 -54.935 0.5 58.59 ? C30 LJN 203 C 1 HETATM 15 C C31 LJN . A . O 6 -17.087 1.723 -56.096 0.5 61.88 ? C31 LJN 203 C 1 HETATM 16 C C31 LJN . B . O 6 -16.549 1.063 -55.972 0.5 61.41 ? C31 LJN 203 C 1 HETATM 17 C C33 LJN . A . O 6 -16.191 -0.355 -54.978 0.5 61.16 ? C33 LJN 203 C 1 HETATM 18 C C33 LJN . B . O 6 -16.828 -0.395 -53.863 0.5 63 ? C33 LJN 203 C 1 HETATM 19 C C56 LJN . A . O 6 -15.892 -1.319 -53.818 0.5 67.16 ? C56 LJN 203 C 1 HETATM 20 C C56 LJN . B . O 6 -16.295 -1.62 -54.641 0.5 65.66 ? C56 LJN 203 C 1 HETATM 21 N N26 LJN . A . O 6 -14.942 4.661 -55.497 0.5 62.48 ? N26 LJN 203 C 1 HETATM 22 N N26 LJN . B . O 6 -15.105 4.423 -55.611 0.5 60.83 ? N26 LJN 203 C 1 HETATM 23 N N27 LJN . A . O 6 -14.797 4.583 -56.948 0.5 69.87 ? N27 LJN 203 C 1 HETATM 24 N N27 LJN . B . O 6 -15.152 4.376 -57.072 0.5 69.12 ? N27 LJN 203 C 1 HETATM 25 N N28 LJN . A . O 6 -15.605 3.432 -57.36 0.5 68.43 ? N28 LJN 203 C 1 HETATM 26 N N28 LJN . B . O 6 -15.718 3.065 -57.41 0.5 68.12 ? N28 LJN 203 C 1 HETATM 27 N N32 LJN . A . O 6 -16.903 0.93 -54.836 0.5 58.82 ? N32 LJN 203 C 1 HETATM 28 N N32 LJN . B . O 6 -16.955 0.913 -54.539 0.5 58.86 ? N32 LJN 203 C 1 HETATM 29 O O15 LJN . A . O 6 -17.843 3.18 -50.715 0.5 50.98 ? O15 LJN 203 C 1 HETATM 30 O O15 LJN . B . O 6 -11.534 7.468 -50.918 0.5 46.47 ? O15 LJN 203 C 1 HETATM 31 O O17 LJN . A . O 6 -16.573 5.337 -51.447 0.5 46.66 ? O17 LJN 203 C 1 HETATM 32 O O17 LJN . B . O 6 -12.358 4.995 -51.03 0.5 49.72 ? O17 LJN 203 C 1 HETATM 33 O O23 LJN . A . O 6 -14.208 5.363 -53.342 0.5 55.79 ? O23 LJN 203 C 1 HETATM 34 O O23 LJN . B . O 6 -13.556 5.196 -53.965 0.5 54.76 ? O23 LJN 203 C 1 HETATM 35 O O24 LJN . A . O 6 -16.324 8.198 -53.238 0.5 62.29 ? O24 LJN 203 C 1 HETATM 36 O O24 LJN . B . O 6 -14.567 8.173 -53.455 0.5 61.03 ? O24 LJN 203 C 1 HETATM 37 O O25 LJN . A . O 6 -14.375 8.067 -54.906 0.5 63.69 ? O25 LJN 203 C 1 HETATM 38 O O25 LJN . B . O 6 -16.415 7.09 -54.851 0.5 57.76 ? O25 LJN 203 C 1 HETATM 39 O O35 LJN . A . O 6 -15.811 -0.665 -56.044 0.5 65.25 ? O35 LJN 203 C 1 HETATM 40 O O35 LJN . B . O 6 -17.161 -0.492 -52.732 0.5 69.81 ? O35 LJN 203 C 1 HETATM 41 P P14 LJN . A . O 6 -16.819 4.187 -50.262 0.5 52.41 ? P14 LJN 203 C 1 HETATM 42 P P14 LJN . B . O 6 -11.462 6.152 -50.194 0.5 44.19 ? P14 LJN 203 C 1 HETATM 43 O O1 LJN . A . O 6 -17.315 4.917 -49.026 0.5 43.98 ? O1 LJN 203 C 1 HETATM 44 O O1 LJN . B . O 6 -10.002 5.769 -50.151 0.5 43.58 ? O1 LJN 203 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #