data_6SIU # _model_server_result.job_id jHhV1rjnxPFlJBpMWV7m6g _model_server_result.datetime_utc '2024-11-13 20:17:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6siu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":203}' # _entry.id 6SIU # _exptl.entry_id 6SIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.238 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{S},4~{R},5~{R})-5-[4-(acetamidomethyl)-1,2,3-triazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SIU _cell.length_a 92.241 _cell.length_b 102.213 _cell.length_c 129.273 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 O N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 274 A CYS 3755 1_555 S C56 LJN . D LJN 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.794 ? covale ? covale2 A SG CYS 274 A CYS 3755 1_555 S C56 LJN . D LJN 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.791 ? covale ? covale3 B SG CYS 274 B CYS 3755 1_555 O C56 LJN . C LJN 203 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.804 ? covale ? covale4 B SG CYS 274 B CYS 3755 1_555 O C56 LJN . C LJN 203 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.839 ? covale ? covale5 C OH TYR 33 C TYR 32 1_555 O P14 LJN . C LJN 203 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.673 ? covale ? covale6 C OH TYR 33 C TYR 32 1_555 O P14 LJN . C LJN 203 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.668 ? covale ? covale7 D OH TYR 33 D TYR 32 1_555 S P14 LJN . D LJN 203 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.66 ? covale ? covale8 D OH TYR 33 D TYR 32 1_555 S P14 LJN . D LJN 203 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.656 ? # _chem_comp.formula 'C10 H17 N4 O8 P' _chem_comp.formula_weight 352.238 _chem_comp.id LJN _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{S},4~{R},5~{R})-5-[4-(acetamidomethyl)-1,2,3-triazol-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N28 N27 LJN doub 252 n y N28 C29 LJN sing 253 n y N27 N26 LJN sing 254 n y C29 C31 LJN sing 255 n n C29 C30 LJN doub 256 n y C31 N32 LJN sing 257 n n O35 C33 LJN doub 258 n n N26 C30 LJN sing 259 n y N26 C22 LJN sing 260 n n C33 N32 LJN sing 261 n n C33 C56 LJN sing 262 n n O25 C21 LJN sing 263 n n C21 C22 LJN sing 264 n n C21 C20 LJN sing 265 n n C22 O23 LJN sing 266 n n C20 O24 LJN sing 267 n n C20 C19 LJN sing 268 n n O23 C19 LJN sing 269 n n C19 C18 LJN sing 270 n n O17 C18 LJN sing 271 n n O17 P14 LJN sing 272 n n O15 P14 LJN sing 273 n n P14 O16 LJN doub 274 n n C18 H1 LJN sing 275 n n C18 H2 LJN sing 276 n n C19 H3 LJN sing 277 n n C20 H4 LJN sing 278 n n C21 H5 LJN sing 279 n n C22 H6 LJN sing 280 n n C30 H7 LJN sing 281 n n C31 H8 LJN sing 282 n n C31 H9 LJN sing 283 n n C56 H10 LJN sing 284 n n C56 H11 LJN sing 285 n n C56 H12 LJN sing 286 n n N32 H13 LJN sing 287 n n O15 H14 LJN sing 288 n n O24 H16 LJN sing 289 n n O25 H17 LJN sing 290 n n P14 O1 LJN sing 291 n n O1 H15 LJN sing 292 n n # _atom_sites.entry_id 6SIU _atom_sites.fract_transf_matrix[1][1] 0.010841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009783 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 3801 1 SO4 SO4 . F 3 SO4 A 1 3802 3 SO4 SO4 . G 3 SO4 A 1 3803 6 SO4 SO4 . H 3 SO4 A 1 3804 10 SO4 SO4 . I 3 SO4 B 1 3801 2 SO4 SO4 . J 3 SO4 B 1 3802 4 SO4 SO4 . K 3 SO4 B 1 3803 5 SO4 SO4 . L 3 SO4 B 1 3804 11 SO4 SO4 . M 4 GDP C 1 201 201 GDP GDP . N 5 GOL C 1 202 301 GOL GOL . O 6 LJN C 1 203 32 LJN YXC . P 3 SO4 C 1 204 7 SO4 SO4 . Q 4 GDP D 1 201 201 GDP GDP . R 5 GOL D 1 202 301 GOL GOL . S 6 LJN D 1 203 32 LJN YXC . T 3 SO4 D 1 204 8 SO4 SO4 . U 7 HOH A 1 3901 62 HOH HOH . U 7 HOH A 2 3902 31 HOH HOH . U 7 HOH A 3 3903 103 HOH HOH . U 7 HOH A 4 3904 66 HOH HOH . U 7 HOH A 5 3905 19 HOH HOH . U 7 HOH A 6 3906 15 HOH HOH . U 7 HOH A 7 3907 93 HOH HOH . U 7 HOH A 8 3908 7 HOH HOH . U 7 HOH A 9 3909 6 HOH HOH . U 7 HOH A 10 3910 104 HOH HOH . U 7 HOH A 11 3911 110 HOH HOH . U 7 HOH A 12 3912 2 HOH HOH . U 7 HOH A 13 3913 75 HOH HOH . U 7 HOH A 14 3914 5 HOH HOH . U 7 HOH A 15 3915 54 HOH HOH . U 7 HOH A 16 3916 44 HOH HOH . U 7 HOH A 17 3917 86 HOH HOH . U 7 HOH A 18 3918 87 HOH HOH . U 7 HOH A 19 3919 56 HOH HOH . U 7 HOH A 20 3920 108 HOH HOH . U 7 HOH A 21 3921 16 HOH HOH . U 7 HOH A 22 3922 10 HOH HOH . U 7 HOH A 23 3923 18 HOH HOH . U 7 HOH A 24 3924 65 HOH HOH . U 7 HOH A 25 3925 57 HOH HOH . U 7 HOH A 26 3926 40 HOH HOH . U 7 HOH A 27 3927 105 HOH HOH . U 7 HOH A 28 3928 45 HOH HOH . U 7 HOH A 29 3929 106 HOH HOH . U 7 HOH A 30 3930 89 HOH HOH . U 7 HOH A 31 3931 109 HOH HOH . U 7 HOH A 32 3932 85 HOH HOH . V 7 HOH B 1 3901 77 HOH HOH . V 7 HOH B 2 3902 38 HOH HOH . V 7 HOH B 3 3903 94 HOH HOH . V 7 HOH B 4 3904 42 HOH HOH . V 7 HOH B 5 3905 102 HOH HOH . V 7 HOH B 6 3906 51 HOH HOH . V 7 HOH B 7 3907 20 HOH HOH . V 7 HOH B 8 3908 50 HOH HOH . V 7 HOH B 9 3909 35 HOH HOH . V 7 HOH B 10 3910 100 HOH HOH . V 7 HOH B 11 3911 9 HOH HOH . V 7 HOH B 12 3912 41 HOH HOH . V 7 HOH B 13 3913 32 HOH HOH . V 7 HOH B 14 3914 70 HOH HOH . V 7 HOH B 15 3915 21 HOH HOH . V 7 HOH B 16 3916 79 HOH HOH . V 7 HOH B 17 3917 1 HOH HOH . V 7 HOH B 18 3918 53 HOH HOH . V 7 HOH B 19 3919 29 HOH HOH . V 7 HOH B 20 3920 4 HOH HOH . V 7 HOH B 21 3921 49 HOH HOH . V 7 HOH B 22 3922 72 HOH HOH . V 7 HOH B 23 3923 78 HOH HOH . V 7 HOH B 24 3924 99 HOH HOH . V 7 HOH B 25 3925 92 HOH HOH . V 7 HOH B 26 3926 33 HOH HOH . V 7 HOH B 27 3927 55 HOH HOH . V 7 HOH B 28 3928 91 HOH HOH . V 7 HOH B 29 3929 34 HOH HOH . V 7 HOH B 30 3930 69 HOH HOH . V 7 HOH B 31 3931 74 HOH HOH . V 7 HOH B 32 3932 61 HOH HOH . V 7 HOH B 33 3933 8 HOH HOH . V 7 HOH B 34 3934 67 HOH HOH . V 7 HOH B 35 3935 52 HOH HOH . V 7 HOH B 36 3936 36 HOH HOH . V 7 HOH B 37 3937 60 HOH HOH . V 7 HOH B 38 3938 95 HOH HOH . V 7 HOH B 39 3939 68 HOH HOH . V 7 HOH B 40 3940 80 HOH HOH . V 7 HOH B 41 3941 96 HOH HOH . W 7 HOH C 1 301 27 HOH HOH . W 7 HOH C 2 302 3 HOH HOH . W 7 HOH C 3 303 47 HOH HOH . W 7 HOH C 4 304 81 HOH HOH . W 7 HOH C 5 305 107 HOH HOH . W 7 HOH C 6 306 26 HOH HOH . W 7 HOH C 7 307 39 HOH HOH . W 7 HOH C 8 308 14 HOH HOH . W 7 HOH C 9 309 46 HOH HOH . W 7 HOH C 10 310 73 HOH HOH . W 7 HOH C 11 311 17 HOH HOH . W 7 HOH C 12 312 30 HOH HOH . W 7 HOH C 13 313 23 HOH HOH . W 7 HOH C 14 314 28 HOH HOH . W 7 HOH C 15 315 25 HOH HOH . W 7 HOH C 16 316 58 HOH HOH . W 7 HOH C 17 317 97 HOH HOH . W 7 HOH C 18 318 59 HOH HOH . W 7 HOH C 19 319 63 HOH HOH . X 7 HOH D 1 301 76 HOH HOH . X 7 HOH D 2 302 48 HOH HOH . X 7 HOH D 3 303 24 HOH HOH . X 7 HOH D 4 304 83 HOH HOH . X 7 HOH D 5 305 82 HOH HOH . X 7 HOH D 6 306 98 HOH HOH . X 7 HOH D 7 307 90 HOH HOH . X 7 HOH D 8 308 64 HOH HOH . X 7 HOH D 9 309 37 HOH HOH . X 7 HOH D 10 310 12 HOH HOH . X 7 HOH D 11 311 22 HOH HOH . X 7 HOH D 12 312 88 HOH HOH . X 7 HOH D 13 313 13 HOH HOH . X 7 HOH D 14 314 43 HOH HOH . X 7 HOH D 15 315 71 HOH HOH . X 7 HOH D 16 316 84 HOH HOH . X 7 HOH D 17 317 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 LJN . A . S 6 23.666 -11.782 -34.939 0.5 56.31 ? C18 LJN 203 D 1 HETATM 2 C C18 LJN . B . S 6 24.223 -12.285 -34.026 0.5 59.3 ? C18 LJN 203 D 1 HETATM 3 C C19 LJN . A . S 6 24.86 -12.599 -35.453 0.5 61.16 ? C19 LJN 203 D 1 HETATM 4 C C19 LJN . B . S 6 25.136 -12.956 -35.054 0.5 61.57 ? C19 LJN 203 D 1 HETATM 5 C C20 LJN . A . S 6 25.639 -13.207 -34.317 0.5 62.52 ? C20 LJN 203 D 1 HETATM 6 C C20 LJN . B . S 6 26.194 -13.761 -34.353 0.5 65.61 ? C20 LJN 203 D 1 HETATM 7 C C21 LJN . A . S 6 27.033 -12.683 -34.415 0.5 63.33 ? C21 LJN 203 D 1 HETATM 8 C C21 LJN . B . S 6 27.438 -12.946 -34.445 0.5 64.59 ? C21 LJN 203 D 1 HETATM 9 C C22 LJN . A . S 6 27.133 -12.03 -35.746 0.5 61.69 ? C22 LJN 203 D 1 HETATM 10 C C22 LJN . B . S 6 27.254 -12.118 -35.665 0.5 61.72 ? C22 LJN 203 D 1 HETATM 11 C C29 LJN . A . S 6 28.672 -8.874 -34.998 0.5 61.07 ? C29 LJN 203 D 1 HETATM 12 C C29 LJN . B . S 6 28.532 -8.898 -34.747 0.5 61.91 ? C29 LJN 203 D 1 HETATM 13 C C30 LJN . A . S 6 27.703 -9.902 -34.567 0.5 61.3 ? C30 LJN 203 D 1 HETATM 14 C C30 LJN . B . S 6 27.647 -10.02 -34.376 0.5 61.98 ? C30 LJN 203 D 1 HETATM 15 C C31 LJN . A . S 6 28.937 -7.596 -34.172 0.5 65.38 ? C31 LJN 203 D 1 HETATM 16 C C31 LJN . B . S 6 28.695 -7.65 -33.852 0.5 65.46 ? C31 LJN 203 D 1 HETATM 17 C C33 LJN . A . S 6 26.777 -6.225 -34.265 0.5 64.07 ? C33 LJN 203 D 1 HETATM 18 C C33 LJN . B . S 6 26.612 -6.213 -34.195 0.5 64.14 ? C33 LJN 203 D 1 HETATM 19 C C56 LJN . A . S 6 25.934 -5.044 -34.794 0.5 64.37 ? C56 LJN 203 D 1 HETATM 20 C C56 LJN . B . S 6 25.871 -5.002 -34.804 0.5 64.24 ? C56 LJN 203 D 1 HETATM 21 N N26 LJN . A . S 6 27.869 -10.812 -35.654 0.5 61.2 ? N26 LJN 203 D 1 HETATM 22 N N26 LJN . B . S 6 27.887 -10.851 -35.509 0.5 60.89 ? N26 LJN 203 D 1 HETATM 23 N N27 LJN . A . S 6 28.84 -10.415 -36.675 0.5 62.86 ? N27 LJN 203 D 1 HETATM 24 N N27 LJN . B . S 6 28.825 -10.328 -36.501 0.5 62.61 ? N27 LJN 203 D 1 HETATM 25 N N28 LJN . A . S 6 29.374 -9.122 -36.228 0.5 63.43 ? N28 LJN 203 D 1 HETATM 26 N N28 LJN . B . S 6 29.255 -9.023 -35.983 0.5 62.58 ? N28 LJN 203 D 1 HETATM 27 N N32 LJN . A . S 6 28.169 -6.432 -34.729 0.5 60.81 ? N32 LJN 203 D 1 HETATM 28 N N32 LJN . B . S 6 28.044 -6.455 -34.484 0.5 62.06 ? N32 LJN 203 D 1 HETATM 29 O O15 LJN . A . S 6 21.589 -14.306 -36.066 0.5 44.37 ? O15 LJN 203 D 1 HETATM 30 O O15 LJN . B . S 6 26.605 -11.146 -31.476 0.5 63.67 ? O15 LJN 203 D 1 HETATM 31 O O17 LJN . A . S 6 22.549 -11.892 -35.841 0.5 52.1 ? O17 LJN 203 D 1 HETATM 32 O O17 LJN . B . S 6 24.921 -11.168 -33.459 0.5 56.35 ? O17 LJN 203 D 1 HETATM 33 O O23 LJN . A . S 6 25.765 -11.761 -36.166 0.5 63.41 ? O23 LJN 203 D 1 HETATM 34 O O23 LJN . B . S 6 25.815 -11.956 -35.806 0.5 62.58 ? O23 LJN 203 D 1 HETATM 35 O O24 LJN . A . S 6 25.653 -14.612 -34.467 0.5 68.14 ? O24 LJN 203 D 1 HETATM 36 O O24 LJN . B . S 6 26.383 -14.997 -35.016 0.5 69.09 ? O24 LJN 203 D 1 HETATM 37 O O25 LJN . A . S 6 27.97 -13.747 -34.324 0.5 68.13 ? O25 LJN 203 D 1 HETATM 38 O O25 LJN . B . S 6 28.576 -13.783 -34.588 0.5 68.18 ? O25 LJN 203 D 1 HETATM 39 O O35 LJN . A . S 6 26.307 -6.976 -33.48 0.5 67.35 ? O35 LJN 203 D 1 HETATM 40 O O35 LJN . B . S 6 26.03 -6.961 -33.486 0.5 69.03 ? O35 LJN 203 D 1 HETATM 41 P P14 LJN . A . S 6 21.301 -12.955 -35.478 0.5 42.51 ? P14 LJN 203 D 1 HETATM 42 P P14 LJN . B . S 6 25.134 -11.098 -31.795 0.5 60.4 ? P14 LJN 203 D 1 HETATM 43 O O1 LJN . A . S 6 19.984 -12.465 -36.027 0.5 41.48 ? O1 LJN 203 D 1 HETATM 44 O O1 LJN . B . S 6 24.428 -12.249 -31.103 0.5 58.96 ? O1 LJN 203 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #