data_6SJC # _model_server_result.job_id T_d4FIU7HVy2YX-eiZcxZA _model_server_result.datetime_utc '2024-11-24 12:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 6SJC # _exptl.entry_id 6SJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.407 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(L-alpha-aspartylsulfamoyl)adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.17 _cell.angle_gamma 90 _cell.entry_id 6SJC _cell.length_a 82.089 _cell.length_b 112.764 _cell.length_c 88.073 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H19 N7 O9 S' _chem_comp.formula_weight 461.407 _chem_comp.id DSZ _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(L-alpha-aspartylsulfamoyl)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C DSZ sing 83 n n C NAT DSZ sing 84 n n C O DSZ doub 85 n n N CA DSZ sing 86 n n N HN DSZ sing 87 n n N HNA DSZ sing 88 n n C2 N1 DSZ doub 89 n y N1 C6 DSZ sing 90 n y N3 C2 DSZ sing 91 n y C2 H2 DSZ sing 92 n n N3 C4 DSZ doub 93 n y N9 C4 DSZ sing 94 n y C4 C5 DSZ sing 95 n y C5 N7 DSZ sing 96 n y C5 C6 DSZ doub 97 n y C6 N6 DSZ sing 98 n n N6 HN6 DSZ sing 99 n n N6 HN6A DSZ sing 100 n n C8 N7 DSZ doub 101 n y N9 C8 DSZ sing 102 n y C8 H8 DSZ sing 103 n n C1' N9 DSZ sing 104 n n CA CB DSZ sing 105 n n CA HA DSZ sing 106 n n CB CG DSZ sing 107 n n CB HB DSZ sing 108 n n CB HBA DSZ sing 109 n n CG OD2 DSZ doub 110 n n CG OD1 DSZ sing 111 n n O4' C1' DSZ sing 112 n n C1' C2' DSZ sing 113 n n C1' H1' DSZ sing 114 n n C3' C2' DSZ sing 115 n n C2' O2' DSZ sing 116 n n C2' H2' DSZ sing 117 n n O2' HO2' DSZ sing 118 n n C4' C3' DSZ sing 119 n n O3' C3' DSZ sing 120 n n C3' H3' DSZ sing 121 n n O3' HO3' DSZ sing 122 n n C5' C4' DSZ sing 123 n n C4' O4' DSZ sing 124 n n C4' H4' DSZ sing 125 n n C5' O5' DSZ sing 126 n n C5' H5' DSZ sing 127 n n C5' "H5'A" DSZ sing 128 n n SBE O5' DSZ sing 129 n n NAT SBE DSZ sing 130 n n NAT HNAT DSZ sing 131 n n OAX SBE DSZ doub 132 n n SBE OAY DSZ doub 133 n n OD1 HOD1 DSZ sing 134 n n # _atom_sites.entry_id 6SJC _atom_sites.fract_transf_matrix[1][1] 0.012182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003075 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01171 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DSZ A 1 601 1 DSZ DSA . D 2 DSZ B 1 601 2 DSZ DSA . E 3 HOH A 1 701 195 HOH HOH . E 3 HOH A 2 702 114 HOH HOH . E 3 HOH A 3 703 130 HOH HOH . E 3 HOH A 4 704 152 HOH HOH . E 3 HOH A 5 705 88 HOH HOH . E 3 HOH A 6 706 34 HOH HOH . E 3 HOH A 7 707 119 HOH HOH . E 3 HOH A 8 708 78 HOH HOH . E 3 HOH A 9 709 91 HOH HOH . E 3 HOH A 10 710 14 HOH HOH . E 3 HOH A 11 711 44 HOH HOH . E 3 HOH A 12 712 145 HOH HOH . E 3 HOH A 13 713 156 HOH HOH . E 3 HOH A 14 714 25 HOH HOH . E 3 HOH A 15 715 179 HOH HOH . E 3 HOH A 16 716 196 HOH HOH . E 3 HOH A 17 717 151 HOH HOH . E 3 HOH A 18 718 90 HOH HOH . E 3 HOH A 19 719 8 HOH HOH . E 3 HOH A 20 720 21 HOH HOH . E 3 HOH A 21 721 6 HOH HOH . E 3 HOH A 22 722 38 HOH HOH . E 3 HOH A 23 723 22 HOH HOH . E 3 HOH A 24 724 52 HOH HOH . E 3 HOH A 25 725 57 HOH HOH . E 3 HOH A 26 726 9 HOH HOH . E 3 HOH A 27 727 154 HOH HOH . E 3 HOH A 28 728 197 HOH HOH . E 3 HOH A 29 729 111 HOH HOH . E 3 HOH A 30 730 82 HOH HOH . E 3 HOH A 31 731 23 HOH HOH . E 3 HOH A 32 732 66 HOH HOH . E 3 HOH A 33 733 53 HOH HOH . E 3 HOH A 34 734 85 HOH HOH . E 3 HOH A 35 735 28 HOH HOH . E 3 HOH A 36 736 162 HOH HOH . E 3 HOH A 37 737 31 HOH HOH . E 3 HOH A 38 738 13 HOH HOH . E 3 HOH A 39 739 104 HOH HOH . E 3 HOH A 40 740 60 HOH HOH . E 3 HOH A 41 741 47 HOH HOH . E 3 HOH A 42 742 18 HOH HOH . E 3 HOH A 43 743 41 HOH HOH . E 3 HOH A 44 744 98 HOH HOH . E 3 HOH A 45 745 100 HOH HOH . E 3 HOH A 46 746 106 HOH HOH . E 3 HOH A 47 747 174 HOH HOH . E 3 HOH A 48 748 19 HOH HOH . E 3 HOH A 49 749 99 HOH HOH . E 3 HOH A 50 750 68 HOH HOH . E 3 HOH A 51 751 83 HOH HOH . E 3 HOH A 52 752 161 HOH HOH . E 3 HOH A 53 753 94 HOH HOH . E 3 HOH A 54 754 133 HOH HOH . E 3 HOH A 55 755 56 HOH HOH . E 3 HOH A 56 756 129 HOH HOH . E 3 HOH A 57 757 74 HOH HOH . E 3 HOH A 58 758 184 HOH HOH . E 3 HOH A 59 759 73 HOH HOH . E 3 HOH A 60 760 127 HOH HOH . E 3 HOH A 61 761 105 HOH HOH . E 3 HOH A 62 762 29 HOH HOH . E 3 HOH A 63 763 140 HOH HOH . E 3 HOH A 64 764 204 HOH HOH . E 3 HOH A 65 765 5 HOH HOH . E 3 HOH A 66 766 26 HOH HOH . E 3 HOH A 67 767 117 HOH HOH . E 3 HOH A 68 768 80 HOH HOH . E 3 HOH A 69 769 70 HOH HOH . E 3 HOH A 70 770 131 HOH HOH . E 3 HOH A 71 771 173 HOH HOH . E 3 HOH A 72 772 102 HOH HOH . E 3 HOH A 73 773 65 HOH HOH . E 3 HOH A 74 774 50 HOH HOH . E 3 HOH A 75 775 30 HOH HOH . E 3 HOH A 76 776 33 HOH HOH . E 3 HOH A 77 777 62 HOH HOH . E 3 HOH A 78 778 58 HOH HOH . E 3 HOH A 79 779 95 HOH HOH . E 3 HOH A 80 780 71 HOH HOH . E 3 HOH A 81 781 48 HOH HOH . E 3 HOH A 82 782 39 HOH HOH . E 3 HOH A 83 783 40 HOH HOH . E 3 HOH A 84 784 86 HOH HOH . E 3 HOH A 85 785 190 HOH HOH . E 3 HOH A 86 786 142 HOH HOH . E 3 HOH A 87 787 177 HOH HOH . E 3 HOH A 88 788 49 HOH HOH . E 3 HOH A 89 789 46 HOH HOH . E 3 HOH A 90 790 15 HOH HOH . E 3 HOH A 91 791 191 HOH HOH . E 3 HOH A 92 792 128 HOH HOH . E 3 HOH A 93 793 158 HOH HOH . E 3 HOH A 94 794 120 HOH HOH . E 3 HOH A 95 795 205 HOH HOH . E 3 HOH A 96 796 165 HOH HOH . E 3 HOH A 97 797 43 HOH HOH . E 3 HOH A 98 798 32 HOH HOH . E 3 HOH A 99 799 112 HOH HOH . E 3 HOH A 100 800 108 HOH HOH . E 3 HOH A 101 801 107 HOH HOH . E 3 HOH A 102 802 159 HOH HOH . E 3 HOH A 103 803 121 HOH HOH . E 3 HOH A 104 804 192 HOH HOH . E 3 HOH A 105 805 206 HOH HOH . E 3 HOH A 106 806 193 HOH HOH . E 3 HOH A 107 807 194 HOH HOH . E 3 HOH A 108 808 92 HOH HOH . E 3 HOH A 109 809 188 HOH HOH . E 3 HOH A 110 810 189 HOH HOH . E 3 HOH A 111 811 170 HOH HOH . F 3 HOH B 1 701 27 HOH HOH . F 3 HOH B 2 702 123 HOH HOH . F 3 HOH B 3 703 175 HOH HOH . F 3 HOH B 4 704 11 HOH HOH . F 3 HOH B 5 705 163 HOH HOH . F 3 HOH B 6 706 1 HOH HOH . F 3 HOH B 7 707 75 HOH HOH . F 3 HOH B 8 708 132 HOH HOH . F 3 HOH B 9 709 16 HOH HOH . F 3 HOH B 10 710 59 HOH HOH . F 3 HOH B 11 711 42 HOH HOH . F 3 HOH B 12 712 113 HOH HOH . F 3 HOH B 13 713 115 HOH HOH . F 3 HOH B 14 714 2 HOH HOH . F 3 HOH B 15 715 79 HOH HOH . F 3 HOH B 16 716 7 HOH HOH . F 3 HOH B 17 717 176 HOH HOH . F 3 HOH B 18 718 125 HOH HOH . F 3 HOH B 19 719 166 HOH HOH . F 3 HOH B 20 720 37 HOH HOH . F 3 HOH B 21 721 136 HOH HOH . F 3 HOH B 22 722 64 HOH HOH . F 3 HOH B 23 723 146 HOH HOH . F 3 HOH B 24 724 183 HOH HOH . F 3 HOH B 25 725 144 HOH HOH . F 3 HOH B 26 726 93 HOH HOH . F 3 HOH B 27 727 97 HOH HOH . F 3 HOH B 28 728 4 HOH HOH . F 3 HOH B 29 729 199 HOH HOH . F 3 HOH B 30 730 118 HOH HOH . F 3 HOH B 31 731 36 HOH HOH . F 3 HOH B 32 732 55 HOH HOH . F 3 HOH B 33 733 203 HOH HOH . F 3 HOH B 34 734 103 HOH HOH . F 3 HOH B 35 735 155 HOH HOH . F 3 HOH B 36 736 24 HOH HOH . F 3 HOH B 37 737 198 HOH HOH . F 3 HOH B 38 738 35 HOH HOH . F 3 HOH B 39 739 181 HOH HOH . F 3 HOH B 40 740 69 HOH HOH . F 3 HOH B 41 741 178 HOH HOH . F 3 HOH B 42 742 84 HOH HOH . F 3 HOH B 43 743 63 HOH HOH . F 3 HOH B 44 744 148 HOH HOH . F 3 HOH B 45 745 96 HOH HOH . F 3 HOH B 46 746 20 HOH HOH . F 3 HOH B 47 747 185 HOH HOH . F 3 HOH B 48 748 54 HOH HOH . F 3 HOH B 49 749 87 HOH HOH . F 3 HOH B 50 750 77 HOH HOH . F 3 HOH B 51 751 122 HOH HOH . F 3 HOH B 52 752 67 HOH HOH . F 3 HOH B 53 753 138 HOH HOH . F 3 HOH B 54 754 139 HOH HOH . F 3 HOH B 55 755 168 HOH HOH . F 3 HOH B 56 756 124 HOH HOH . F 3 HOH B 57 757 169 HOH HOH . F 3 HOH B 58 758 116 HOH HOH . F 3 HOH B 59 759 149 HOH HOH . F 3 HOH B 60 760 10 HOH HOH . F 3 HOH B 61 761 172 HOH HOH . F 3 HOH B 62 762 141 HOH HOH . F 3 HOH B 63 763 143 HOH HOH . F 3 HOH B 64 764 147 HOH HOH . F 3 HOH B 65 765 51 HOH HOH . F 3 HOH B 66 766 171 HOH HOH . F 3 HOH B 67 767 89 HOH HOH . F 3 HOH B 68 768 157 HOH HOH . F 3 HOH B 69 769 101 HOH HOH . F 3 HOH B 70 770 81 HOH HOH . F 3 HOH B 71 771 12 HOH HOH . F 3 HOH B 72 772 186 HOH HOH . F 3 HOH B 73 773 150 HOH HOH . F 3 HOH B 74 774 45 HOH HOH . F 3 HOH B 75 775 167 HOH HOH . F 3 HOH B 76 776 207 HOH HOH . F 3 HOH B 77 777 17 HOH HOH . F 3 HOH B 78 778 201 HOH HOH . F 3 HOH B 79 779 202 HOH HOH . F 3 HOH B 80 780 3 HOH HOH . F 3 HOH B 81 781 110 HOH HOH . F 3 HOH B 82 782 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C DSZ . . . D 2 -48.844 -16.436 -12.533 1 61.78 ? C DSZ 601 B 1 HETATM 2 N N DSZ . . . D 2 -49.362 -14.134 -11.934 1 51.71 ? N DSZ 601 B 1 HETATM 3 O O DSZ . . . D 2 -47.691 -16.338 -12.111 1 51.01 ? O DSZ 601 B 1 HETATM 4 N N1 DSZ . . . D 2 -40.573 -23.22 -12.766 1 59.73 ? N1 DSZ 601 B 1 HETATM 5 C C2 DSZ . . . D 2 -40.828 -23.05 -14.068 1 56.59 ? C2 DSZ 601 B 1 HETATM 6 N N3 DSZ . . . D 2 -41.955 -22.636 -14.653 1 58.43 ? N3 DSZ 601 B 1 HETATM 7 C C4 DSZ . . . D 2 -42.907 -22.375 -13.742 1 54.51 ? C4 DSZ 601 B 1 HETATM 8 C C5 DSZ . . . D 2 -42.788 -22.513 -12.368 1 51.27 ? C5 DSZ 601 B 1 HETATM 9 C C6 DSZ . . . D 2 -41.551 -22.954 -11.869 1 60.44 ? C6 DSZ 601 B 1 HETATM 10 N N6 DSZ . . . D 2 -41.276 -23.091 -10.568 1 50.21 ? N6 DSZ 601 B 1 HETATM 11 N N7 DSZ . . . D 2 -43.974 -22.142 -11.741 1 52.11 ? N7 DSZ 601 B 1 HETATM 12 C C8 DSZ . . . D 2 -44.755 -21.793 -12.734 1 50.23 ? C8 DSZ 601 B 1 HETATM 13 N N9 DSZ . . . D 2 -44.173 -21.901 -13.97 1 59.65 ? N9 DSZ 601 B 1 HETATM 14 C CA DSZ . . . D 2 -49.843 -15.287 -12.712 1 52.99 ? CA DSZ 601 B 1 HETATM 15 C CB DSZ . . . D 2 -49.993 -15.029 -14.21 1 53.79 ? CB DSZ 601 B 1 HETATM 16 C CG DSZ . . . D 2 -51.219 -14.144 -14.4 1 60.31 ? CG DSZ 601 B 1 HETATM 17 C C1' DSZ . . . D 2 -44.762 -21.53 -15.257 1 58.55 ? C1' DSZ 601 B 1 HETATM 18 C C2' DSZ . . . D 2 -45.951 -22.402 -15.7 1 48.35 ? C2' DSZ 601 B 1 HETATM 19 O O2' DSZ . . . D 2 -45.841 -22.735 -17.08 1 57.8 ? O2' DSZ 601 B 1 HETATM 20 C C3' DSZ . . . D 2 -47.145 -21.477 -15.46 1 56.16 ? C3' DSZ 601 B 1 HETATM 21 O O3' DSZ . . . D 2 -48.201 -21.753 -16.371 1 61.77 ? O3' DSZ 601 B 1 HETATM 22 C C4' DSZ . . . D 2 -46.545 -20.107 -15.734 1 58.2 ? C4' DSZ 601 B 1 HETATM 23 O O4' DSZ . . . D 2 -45.219 -20.187 -15.177 1 61.07 ? O4' DSZ 601 B 1 HETATM 24 C C5' DSZ . . . D 2 -47.289 -18.934 -15.148 1 61.07 ? C5' DSZ 601 B 1 HETATM 25 O O5' DSZ . . . D 2 -47.137 -18.983 -13.703 1 56.48 ? O5' DSZ 601 B 1 HETATM 26 N NAT DSZ . . . D 2 -49.297 -17.748 -12.923 1 59.67 ? NAT DSZ 601 B 1 HETATM 27 O OAX DSZ . . . D 2 -47.983 -19.202 -11.474 1 50.71 ? OAX DSZ 601 B 1 HETATM 28 O OAY DSZ . . . D 2 -49.236 -20.127 -13.398 1 58.55 ? OAY DSZ 601 B 1 HETATM 29 S SBE DSZ . . . D 2 -48.455 -19.099 -12.809 1 60.04 ? SBE DSZ 601 B 1 HETATM 30 O OD1 DSZ . . . D 2 -51.126 -13.168 -15.178 1 54.34 ? OD1 DSZ 601 B 1 HETATM 31 O OD2 DSZ . . . D 2 -52.255 -14.461 -13.771 1 58.47 ? OD2 DSZ 601 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #