data_6SJD # _model_server_result.job_id Gk017CF6sRuOVSEDBvPfNA _model_server_result.datetime_utc '2025-09-01 07:07:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 6SJD # _exptl.entry_id 6SJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SJD _cell.length_a 114.237 _cell.length_b 114.237 _cell.length_c 165.268 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -82.634 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 97 B ASP 280 1_555 D MG MG . B MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc2 D MG MG . B MG 1001 1_555 G O HOH . B HOH 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc3 D MG MG . B MG 1001 1_555 G O HOH . B HOH 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc4 D MG MG . B MG 1001 1_555 I O HOH . D HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc5 B OD2 ASP 97 A ASP 280 1_555 E MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc6 E MG MG . A MG 1001 1_555 H O HOH . A HOH 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc7 E MG MG . A MG 1001 1_555 H O HOH . A HOH 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? hydrog 'G-A MISPAIR' hydrog1 C N2 G 6 D G 6 1_555 C N1 A 16 D A 16 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-C PAIR' hydrog2 C O6 G 6 D G 6 1_555 C N4 C 18 D C 18 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog3 C N4 C 8 D C 8 1_555 C N1 A 16 D A 16 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog4 C N3 C 8 D C 8 1_555 C N6 A 19 D A 19 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 C N1 A 9 D A 9 1_555 C N3 U 15 D U 15 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 C N6 A 9 D A 9 1_555 C O4 U 15 D U 15 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-U MISPAIR' hydrog7 C N2 G 10 D G 10 1_555 C O2 U 15 D U 15 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-G MISPAIR' hydrog8 C O2 U 11 D U 11 1_555 C N2 G 14 D G 14 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-U MISPAIR' hydrog9 C N2 G 14 D G 14 1_555 C O2 U 11 D U 11 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 C N3 U 15 D U 15 1_555 C N1 A 9 D A 9 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 C O4 U 15 D U 15 1_555 C N6 A 9 D A 9 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-G MISPAIR' hydrog12 C N1 A 16 D A 16 1_555 C N2 G 6 D G 6 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-C MISPAIR' hydrog13 C N1 A 16 D A 16 1_555 C N4 C 8 D C 8 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog14 C N3 A 16 D A 16 1_555 C N6 A 19 D A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-G PAIR' hydrog15 C N4 C 18 D C 18 1_555 C O6 G 6 D G 6 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-C MISPAIR' hydrog16 C N6 A 19 D A 19 1_555 C N3 C 8 D C 8 8_554 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6SJD _atom_sites.fract_transf_matrix[1][1] 0.008754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG B 1 1001 1001 MG MG . E 3 MG A 1 1001 1001 MG MG . F 4 CAC D 1 101 188 CAC CAC . G 5 HOH B 1 1101 24 HOH HOH . G 5 HOH B 2 1102 26 HOH HOH . G 5 HOH B 3 1103 19 HOH HOH . G 5 HOH B 4 1104 13 HOH HOH . G 5 HOH B 5 1105 10 HOH HOH . G 5 HOH B 6 1106 11 HOH HOH . G 5 HOH B 7 1107 25 HOH HOH . H 5 HOH A 1 1101 16 HOH HOH . H 5 HOH A 2 1102 9 HOH HOH . H 5 HOH A 3 1103 20 HOH HOH . H 5 HOH A 4 1104 17 HOH HOH . H 5 HOH A 5 1105 8 HOH HOH . H 5 HOH A 6 1106 14 HOH HOH . H 5 HOH A 7 1107 7 HOH HOH . I 5 HOH D 1 201 23 HOH HOH . I 5 HOH D 2 202 15 HOH HOH . I 5 HOH D 3 203 22 HOH HOH . I 5 HOH D 4 204 6 HOH HOH . I 5 HOH D 5 205 21 HOH HOH . I 5 HOH D 6 206 1 HOH HOH . I 5 HOH D 7 207 3 HOH HOH . I 5 HOH D 8 208 2 HOH HOH . I 5 HOH D 9 209 5 HOH HOH . I 5 HOH D 10 210 4 HOH HOH . I 5 HOH D 11 211 12 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.101 _atom_site.Cartn_y -44.412 _atom_site.Cartn_z -29.304 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 102.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 402 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #