data_6SJK # _model_server_result.job_id iGe12WeTyNDHm1iALmtTuA _model_server_result.datetime_utc '2024-11-01 19:35:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 6SJK # _exptl.entry_id 6SJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SJK _cell.length_a 76.11 _cell.length_b 84.06 _cell.length_c 86.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6SJK _atom_sites.fract_transf_matrix[1][1] 0.013139 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 401 2 GOL GOL . D 2 GOL A 1 402 4 GOL GOL . E 2 GOL A 1 403 5 GOL GOL . F 2 GOL B 1 401 1 GOL GOL . G 2 GOL B 1 402 3 GOL GOL . H 3 HOH A 1 501 66 HOH HOH . H 3 HOH A 2 502 54 HOH HOH . H 3 HOH A 3 503 38 HOH HOH . H 3 HOH A 4 504 53 HOH HOH . H 3 HOH A 5 505 95 HOH HOH . H 3 HOH A 6 506 109 HOH HOH . H 3 HOH A 7 507 70 HOH HOH . H 3 HOH A 8 508 103 HOH HOH . H 3 HOH A 9 509 82 HOH HOH . H 3 HOH A 10 510 93 HOH HOH . H 3 HOH A 11 511 112 HOH HOH . H 3 HOH A 12 512 148 HOH HOH . H 3 HOH A 13 513 118 HOH HOH . H 3 HOH A 14 514 94 HOH HOH . H 3 HOH A 15 515 99 HOH HOH . H 3 HOH A 16 516 170 HOH HOH . H 3 HOH A 17 517 44 HOH HOH . H 3 HOH A 18 518 89 HOH HOH . H 3 HOH A 19 519 166 HOH HOH . H 3 HOH A 20 520 11 HOH HOH . H 3 HOH A 21 521 131 HOH HOH . H 3 HOH A 22 522 135 HOH HOH . H 3 HOH A 23 523 77 HOH HOH . H 3 HOH A 24 524 13 HOH HOH . H 3 HOH A 25 525 74 HOH HOH . H 3 HOH A 26 526 56 HOH HOH . H 3 HOH A 27 527 12 HOH HOH . H 3 HOH A 28 528 159 HOH HOH . H 3 HOH A 29 529 15 HOH HOH . H 3 HOH A 30 530 85 HOH HOH . H 3 HOH A 31 531 156 HOH HOH . H 3 HOH A 32 532 152 HOH HOH . H 3 HOH A 33 533 150 HOH HOH . H 3 HOH A 34 534 67 HOH HOH . H 3 HOH A 35 535 134 HOH HOH . H 3 HOH A 36 536 116 HOH HOH . H 3 HOH A 37 537 73 HOH HOH . H 3 HOH A 38 538 22 HOH HOH . H 3 HOH A 39 539 146 HOH HOH . H 3 HOH A 40 540 151 HOH HOH . H 3 HOH A 41 541 155 HOH HOH . H 3 HOH A 42 542 92 HOH HOH . H 3 HOH A 43 543 69 HOH HOH . H 3 HOH A 44 544 178 HOH HOH . H 3 HOH A 45 545 98 HOH HOH . H 3 HOH A 46 546 136 HOH HOH . H 3 HOH A 47 547 141 HOH HOH . H 3 HOH A 48 548 32 HOH HOH . H 3 HOH A 49 549 110 HOH HOH . H 3 HOH A 50 550 164 HOH HOH . H 3 HOH A 51 551 143 HOH HOH . H 3 HOH A 52 552 133 HOH HOH . H 3 HOH A 53 553 187 HOH HOH . H 3 HOH A 54 554 129 HOH HOH . H 3 HOH A 55 555 8 HOH HOH . H 3 HOH A 56 556 168 HOH HOH . H 3 HOH A 57 557 23 HOH HOH . H 3 HOH A 58 558 100 HOH HOH . H 3 HOH A 59 559 154 HOH HOH . H 3 HOH A 60 560 52 HOH HOH . H 3 HOH A 61 561 127 HOH HOH . H 3 HOH A 62 562 158 HOH HOH . H 3 HOH A 63 563 108 HOH HOH . H 3 HOH A 64 564 181 HOH HOH . H 3 HOH A 65 565 96 HOH HOH . H 3 HOH A 66 566 64 HOH HOH . H 3 HOH A 67 567 185 HOH HOH . H 3 HOH A 68 568 61 HOH HOH . H 3 HOH A 69 569 63 HOH HOH . H 3 HOH A 70 570 130 HOH HOH . H 3 HOH A 71 571 121 HOH HOH . H 3 HOH A 72 572 78 HOH HOH . H 3 HOH A 73 573 171 HOH HOH . H 3 HOH A 74 574 60 HOH HOH . H 3 HOH A 75 575 128 HOH HOH . H 3 HOH A 76 576 132 HOH HOH . H 3 HOH A 77 577 107 HOH HOH . H 3 HOH A 78 578 177 HOH HOH . H 3 HOH A 79 579 25 HOH HOH . H 3 HOH A 80 580 153 HOH HOH . H 3 HOH A 81 581 117 HOH HOH . I 3 HOH B 1 501 49 HOH HOH . I 3 HOH B 2 502 59 HOH HOH . I 3 HOH B 3 503 20 HOH HOH . I 3 HOH B 4 504 144 HOH HOH . I 3 HOH B 5 505 83 HOH HOH . I 3 HOH B 6 506 123 HOH HOH . I 3 HOH B 7 507 119 HOH HOH . I 3 HOH B 8 508 19 HOH HOH . I 3 HOH B 9 509 167 HOH HOH . I 3 HOH B 10 510 75 HOH HOH . I 3 HOH B 11 511 163 HOH HOH . I 3 HOH B 12 512 87 HOH HOH . I 3 HOH B 13 513 17 HOH HOH . I 3 HOH B 14 514 14 HOH HOH . I 3 HOH B 15 515 18 HOH HOH . I 3 HOH B 16 516 97 HOH HOH . I 3 HOH B 17 517 137 HOH HOH . I 3 HOH B 18 518 45 HOH HOH . I 3 HOH B 19 519 46 HOH HOH . I 3 HOH B 20 520 102 HOH HOH . I 3 HOH B 21 521 30 HOH HOH . I 3 HOH B 22 522 80 HOH HOH . I 3 HOH B 23 523 65 HOH HOH . I 3 HOH B 24 524 126 HOH HOH . I 3 HOH B 25 525 47 HOH HOH . I 3 HOH B 26 526 104 HOH HOH . I 3 HOH B 27 527 160 HOH HOH . I 3 HOH B 28 528 162 HOH HOH . I 3 HOH B 29 529 48 HOH HOH . I 3 HOH B 30 530 90 HOH HOH . I 3 HOH B 31 531 37 HOH HOH . I 3 HOH B 32 532 9 HOH HOH . I 3 HOH B 33 533 42 HOH HOH . I 3 HOH B 34 534 169 HOH HOH . I 3 HOH B 35 535 28 HOH HOH . I 3 HOH B 36 536 173 HOH HOH . I 3 HOH B 37 537 186 HOH HOH . I 3 HOH B 38 538 106 HOH HOH . I 3 HOH B 39 539 50 HOH HOH . I 3 HOH B 40 540 36 HOH HOH . I 3 HOH B 41 541 35 HOH HOH . I 3 HOH B 42 542 149 HOH HOH . I 3 HOH B 43 543 10 HOH HOH . I 3 HOH B 44 544 142 HOH HOH . I 3 HOH B 45 545 81 HOH HOH . I 3 HOH B 46 546 7 HOH HOH . I 3 HOH B 47 547 157 HOH HOH . I 3 HOH B 48 548 79 HOH HOH . I 3 HOH B 49 549 84 HOH HOH . I 3 HOH B 50 550 29 HOH HOH . I 3 HOH B 51 551 21 HOH HOH . I 3 HOH B 52 552 86 HOH HOH . I 3 HOH B 53 553 101 HOH HOH . I 3 HOH B 54 554 138 HOH HOH . I 3 HOH B 55 555 40 HOH HOH . I 3 HOH B 56 556 6 HOH HOH . I 3 HOH B 57 557 88 HOH HOH . I 3 HOH B 58 558 33 HOH HOH . I 3 HOH B 59 559 39 HOH HOH . I 3 HOH B 60 560 41 HOH HOH . I 3 HOH B 61 561 58 HOH HOH . I 3 HOH B 62 562 71 HOH HOH . I 3 HOH B 63 563 105 HOH HOH . I 3 HOH B 64 564 16 HOH HOH . I 3 HOH B 65 565 72 HOH HOH . I 3 HOH B 66 566 62 HOH HOH . I 3 HOH B 67 567 34 HOH HOH . I 3 HOH B 68 568 27 HOH HOH . I 3 HOH B 69 569 174 HOH HOH . I 3 HOH B 70 570 124 HOH HOH . I 3 HOH B 71 571 43 HOH HOH . I 3 HOH B 72 572 176 HOH HOH . I 3 HOH B 73 573 172 HOH HOH . I 3 HOH B 74 574 68 HOH HOH . I 3 HOH B 75 575 24 HOH HOH . I 3 HOH B 76 576 140 HOH HOH . I 3 HOH B 77 577 182 HOH HOH . I 3 HOH B 78 578 31 HOH HOH . I 3 HOH B 79 579 91 HOH HOH . I 3 HOH B 80 580 145 HOH HOH . I 3 HOH B 81 581 120 HOH HOH . I 3 HOH B 82 582 179 HOH HOH . I 3 HOH B 83 583 57 HOH HOH . I 3 HOH B 84 584 76 HOH HOH . I 3 HOH B 85 585 139 HOH HOH . I 3 HOH B 86 586 55 HOH HOH . I 3 HOH B 87 587 51 HOH HOH . I 3 HOH B 88 588 26 HOH HOH . I 3 HOH B 89 589 183 HOH HOH . I 3 HOH B 90 590 111 HOH HOH . I 3 HOH B 91 591 175 HOH HOH . I 3 HOH B 92 592 180 HOH HOH . I 3 HOH B 93 593 113 HOH HOH . I 3 HOH B 94 594 161 HOH HOH . I 3 HOH B 95 595 184 HOH HOH . I 3 HOH B 96 596 165 HOH HOH . I 3 HOH B 97 597 122 HOH HOH . I 3 HOH B 98 598 125 HOH HOH . I 3 HOH B 99 599 114 HOH HOH . I 3 HOH B 100 600 147 HOH HOH . I 3 HOH B 101 601 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 2 33.023 18.11 58.228 1 53.52 ? C1 GOL 402 B 1 HETATM 2 O O1 GOL . . . G 2 32.47 19.395 58.502 1 53.83 ? O1 GOL 402 B 1 HETATM 3 C C2 GOL . . . G 2 34.537 18.127 58.268 1 53.59 ? C2 GOL 402 B 1 HETATM 4 O O2 GOL . . . G 2 34.982 18.244 59.619 1 54.29 ? O2 GOL 402 B 1 HETATM 5 C C3 GOL . . . G 2 35.149 19.23 57.43 1 53.3 ? C3 GOL 402 B 1 HETATM 6 O O3 GOL . . . G 2 34.191 19.827 56.561 1 53.01 ? O3 GOL 402 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #