data_6SJO # _model_server_result.job_id Yqk4x_JvrmizAC2PTPTlOg _model_server_result.datetime_utc '2024-11-23 22:53:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":403}' # _entry.id 6SJO # _exptl.entry_id 6SJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SJO _cell.length_a 77.03 _cell.length_b 84.29 _cell.length_c 87.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6SJO _atom_sites.fract_transf_matrix[1][1] 0.012982 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 THH A 1 901 901 THH LIG . D 3 GOL B 1 401 1 GOL GOL . E 3 GOL B 1 402 2 GOL GOL . F 3 GOL B 1 403 3 GOL GOL . G 3 GOL B 1 404 5 GOL GOL . H 3 GOL B 1 405 7 GOL GOL . I 4 HOH A 1 1001 88 HOH HOH . I 4 HOH A 2 1002 24 HOH HOH . I 4 HOH A 3 1003 60 HOH HOH . I 4 HOH A 4 1004 46 HOH HOH . I 4 HOH A 5 1005 44 HOH HOH . I 4 HOH A 6 1006 59 HOH HOH . I 4 HOH A 7 1007 58 HOH HOH . I 4 HOH A 8 1008 11 HOH HOH . I 4 HOH A 9 1009 52 HOH HOH . I 4 HOH A 10 1010 23 HOH HOH . I 4 HOH A 11 1011 19 HOH HOH . I 4 HOH A 12 1012 10 HOH HOH . I 4 HOH A 13 1013 42 HOH HOH . I 4 HOH A 14 1014 38 HOH HOH . I 4 HOH A 15 1015 64 HOH HOH . I 4 HOH A 16 1016 12 HOH HOH . I 4 HOH A 17 1017 68 HOH HOH . I 4 HOH A 18 1018 37 HOH HOH . I 4 HOH A 19 1019 66 HOH HOH . I 4 HOH A 20 1020 87 HOH HOH . I 4 HOH A 21 1021 40 HOH HOH . I 4 HOH A 22 1022 74 HOH HOH . I 4 HOH A 23 1023 31 HOH HOH . I 4 HOH A 24 1024 90 HOH HOH . I 4 HOH A 25 1025 45 HOH HOH . I 4 HOH A 26 1026 22 HOH HOH . I 4 HOH A 27 1027 35 HOH HOH . I 4 HOH A 28 1028 26 HOH HOH . I 4 HOH A 29 1029 83 HOH HOH . I 4 HOH A 30 1030 49 HOH HOH . J 4 HOH B 1 501 73 HOH HOH . J 4 HOH B 2 502 75 HOH HOH . J 4 HOH B 3 503 67 HOH HOH . J 4 HOH B 4 504 80 HOH HOH . J 4 HOH B 5 505 14 HOH HOH . J 4 HOH B 6 506 77 HOH HOH . J 4 HOH B 7 507 54 HOH HOH . J 4 HOH B 8 508 18 HOH HOH . J 4 HOH B 9 509 47 HOH HOH . J 4 HOH B 10 510 21 HOH HOH . J 4 HOH B 11 511 65 HOH HOH . J 4 HOH B 12 512 62 HOH HOH . J 4 HOH B 13 513 78 HOH HOH . J 4 HOH B 14 514 57 HOH HOH . J 4 HOH B 15 515 32 HOH HOH . J 4 HOH B 16 516 9 HOH HOH . J 4 HOH B 17 517 51 HOH HOH . J 4 HOH B 18 518 27 HOH HOH . J 4 HOH B 19 519 93 HOH HOH . J 4 HOH B 20 520 55 HOH HOH . J 4 HOH B 21 521 50 HOH HOH . J 4 HOH B 22 522 20 HOH HOH . J 4 HOH B 23 523 89 HOH HOH . J 4 HOH B 24 524 72 HOH HOH . J 4 HOH B 25 525 15 HOH HOH . J 4 HOH B 26 526 69 HOH HOH . J 4 HOH B 27 527 33 HOH HOH . J 4 HOH B 28 528 13 HOH HOH . J 4 HOH B 29 529 56 HOH HOH . J 4 HOH B 30 530 70 HOH HOH . J 4 HOH B 31 531 17 HOH HOH . J 4 HOH B 32 532 91 HOH HOH . J 4 HOH B 33 533 16 HOH HOH . J 4 HOH B 34 534 29 HOH HOH . J 4 HOH B 35 535 79 HOH HOH . J 4 HOH B 36 536 53 HOH HOH . J 4 HOH B 37 537 36 HOH HOH . J 4 HOH B 38 538 30 HOH HOH . J 4 HOH B 39 539 81 HOH HOH . J 4 HOH B 40 540 28 HOH HOH . J 4 HOH B 41 541 43 HOH HOH . J 4 HOH B 42 542 25 HOH HOH . J 4 HOH B 43 543 34 HOH HOH . J 4 HOH B 44 544 71 HOH HOH . J 4 HOH B 45 545 41 HOH HOH . J 4 HOH B 46 546 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 14.914 30.482 33.882 1 56.63 ? C1 GOL 403 B 1 HETATM 2 O O1 GOL . . . F 3 14.752 29.644 32.742 1 53.24 ? O1 GOL 403 B 1 HETATM 3 C C2 GOL . . . F 3 16.374 30.774 34.158 1 59.09 ? C2 GOL 403 B 1 HETATM 4 O O2 GOL . . . F 3 17.203 29.944 33.344 1 59.28 ? O2 GOL 403 B 1 HETATM 5 C C3 GOL . . . F 3 16.748 30.599 35.617 1 59.1 ? C3 GOL 403 B 1 HETATM 6 O O3 GOL . . . F 3 16.607 29.248 36.053 1 50.67 ? O3 GOL 403 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #