data_6SJS
#
_model_server_result.job_id            5lnDl_aW25z9RVzE3nPxtA 
_model_server_result.datetime_utc      '2024-11-24 06:11:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sjs 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":904}' 
#
_entry.id    6SJS 
#
_exptl.entry_id    6SJS 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SJS 
_cell.length_a            76.16 
_cell.length_b            84.26 
_cell.length_c            86.71 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SJS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O TYR 26 A TYR 25 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc2 A OD1 ASP 261 A ASP 260 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? 
metalc ? metalc3 D NA NA . A NA 902 1_555 L O HOH . A HOH 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? 
metalc ? metalc4 D NA NA . A NA 902 1_555 L O HOH . A HOH 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc5 D NA NA . A NA 902 1_555 L O HOH . A HOH 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc6 D NA NA . A NA 902 1_555 L O HOH . A HOH 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? 
metalc ? metalc7 D NA NA . A NA 902 1_555 L O HOH . A HOH 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? 
metalc ? metalc8 B O LEU 58 B LEU 57 1_555 F NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? 
metalc ? metalc9 B OE1 GLN 61 B GLN 60 1_555 F NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? 
metalc ? metalc10 B OE1 GLU 62 B GLU 61 1_555 F NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6SJS 
_atom_sites.fract_transf_matrix[1][1]    0.01313 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011868 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 THH A 1 901 901 THH LIG . 
D 3 NA A 1 902 2 NA NA . 
E 2 THH B 1 901 901 THH LIG . 
F 3 NA B 1 902 1 NA NA . 
G 4 GOL B 1 903 3 GOL GOL . 
H 4 GOL B 1 904 5 GOL GOL . 
I 4 GOL B 1 905 6 GOL GOL . 
J 4 GOL B 1 906 7 GOL GOL . 
K 4 GOL B 1 907 8 GOL GOL . 
L 5 HOH A 1 1001 80 HOH HOH . 
L 5 HOH A 2 1002 138 HOH HOH . 
L 5 HOH A 3 1003 111 HOH HOH . 
L 5 HOH A 4 1004 23 HOH HOH . 
L 5 HOH A 5 1005 85 HOH HOH . 
L 5 HOH A 6 1006 91 HOH HOH . 
L 5 HOH A 7 1007 15 HOH HOH . 
L 5 HOH A 8 1008 97 HOH HOH . 
L 5 HOH A 9 1009 119 HOH HOH . 
L 5 HOH A 10 1010 20 HOH HOH . 
L 5 HOH A 11 1011 136 HOH HOH . 
L 5 HOH A 12 1012 92 HOH HOH . 
L 5 HOH A 13 1013 17 HOH HOH . 
L 5 HOH A 14 1014 24 HOH HOH . 
L 5 HOH A 15 1015 68 HOH HOH . 
L 5 HOH A 16 1016 48 HOH HOH . 
L 5 HOH A 17 1017 106 HOH HOH . 
L 5 HOH A 18 1018 94 HOH HOH . 
L 5 HOH A 19 1019 134 HOH HOH . 
L 5 HOH A 20 1020 34 HOH HOH . 
L 5 HOH A 21 1021 31 HOH HOH . 
L 5 HOH A 22 1022 45 HOH HOH . 
L 5 HOH A 23 1023 121 HOH HOH . 
L 5 HOH A 24 1024 63 HOH HOH . 
L 5 HOH A 25 1025 109 HOH HOH . 
L 5 HOH A 26 1026 66 HOH HOH . 
L 5 HOH A 27 1027 13 HOH HOH . 
L 5 HOH A 28 1028 110 HOH HOH . 
L 5 HOH A 29 1029 44 HOH HOH . 
L 5 HOH A 30 1030 145 HOH HOH . 
L 5 HOH A 31 1031 74 HOH HOH . 
L 5 HOH A 32 1032 14 HOH HOH . 
L 5 HOH A 33 1033 118 HOH HOH . 
L 5 HOH A 34 1034 60 HOH HOH . 
L 5 HOH A 35 1035 104 HOH HOH . 
L 5 HOH A 36 1036 90 HOH HOH . 
L 5 HOH A 37 1037 49 HOH HOH . 
L 5 HOH A 38 1038 133 HOH HOH . 
L 5 HOH A 39 1039 46 HOH HOH . 
L 5 HOH A 40 1040 84 HOH HOH . 
L 5 HOH A 41 1041 140 HOH HOH . 
L 5 HOH A 42 1042 116 HOH HOH . 
L 5 HOH A 43 1043 33 HOH HOH . 
L 5 HOH A 44 1044 124 HOH HOH . 
L 5 HOH A 45 1045 57 HOH HOH . 
L 5 HOH A 46 1046 41 HOH HOH . 
L 5 HOH A 47 1047 107 HOH HOH . 
L 5 HOH A 48 1048 78 HOH HOH . 
L 5 HOH A 49 1049 105 HOH HOH . 
L 5 HOH A 50 1050 40 HOH HOH . 
L 5 HOH A 51 1051 76 HOH HOH . 
L 5 HOH A 52 1052 95 HOH HOH . 
L 5 HOH A 53 1053 98 HOH HOH . 
L 5 HOH A 54 1054 100 HOH HOH . 
L 5 HOH A 55 1055 59 HOH HOH . 
L 5 HOH A 56 1056 81 HOH HOH . 
L 5 HOH A 57 1057 64 HOH HOH . 
L 5 HOH A 58 1058 79 HOH HOH . 
L 5 HOH A 59 1059 86 HOH HOH . 
L 5 HOH A 60 1060 126 HOH HOH . 
L 5 HOH A 61 1061 114 HOH HOH . 
L 5 HOH A 62 1062 135 HOH HOH . 
M 5 HOH B 1 1001 58 HOH HOH . 
M 5 HOH B 2 1002 39 HOH HOH . 
M 5 HOH B 3 1003 36 HOH HOH . 
M 5 HOH B 4 1004 137 HOH HOH . 
M 5 HOH B 5 1005 30 HOH HOH . 
M 5 HOH B 6 1006 53 HOH HOH . 
M 5 HOH B 7 1007 123 HOH HOH . 
M 5 HOH B 8 1008 73 HOH HOH . 
M 5 HOH B 9 1009 96 HOH HOH . 
M 5 HOH B 10 1010 19 HOH HOH . 
M 5 HOH B 11 1011 83 HOH HOH . 
M 5 HOH B 12 1012 102 HOH HOH . 
M 5 HOH B 13 1013 88 HOH HOH . 
M 5 HOH B 14 1014 142 HOH HOH . 
M 5 HOH B 15 1015 125 HOH HOH . 
M 5 HOH B 16 1016 47 HOH HOH . 
M 5 HOH B 17 1017 18 HOH HOH . 
M 5 HOH B 18 1018 50 HOH HOH . 
M 5 HOH B 19 1019 21 HOH HOH . 
M 5 HOH B 20 1020 146 HOH HOH . 
M 5 HOH B 21 1021 62 HOH HOH . 
M 5 HOH B 22 1022 122 HOH HOH . 
M 5 HOH B 23 1023 29 HOH HOH . 
M 5 HOH B 24 1024 25 HOH HOH . 
M 5 HOH B 25 1025 35 HOH HOH . 
M 5 HOH B 26 1026 101 HOH HOH . 
M 5 HOH B 27 1027 28 HOH HOH . 
M 5 HOH B 28 1028 82 HOH HOH . 
M 5 HOH B 29 1029 131 HOH HOH . 
M 5 HOH B 30 1030 69 HOH HOH . 
M 5 HOH B 31 1031 52 HOH HOH . 
M 5 HOH B 32 1032 22 HOH HOH . 
M 5 HOH B 33 1033 103 HOH HOH . 
M 5 HOH B 34 1034 93 HOH HOH . 
M 5 HOH B 35 1035 117 HOH HOH . 
M 5 HOH B 36 1036 37 HOH HOH . 
M 5 HOH B 37 1037 55 HOH HOH . 
M 5 HOH B 38 1038 99 HOH HOH . 
M 5 HOH B 39 1039 12 HOH HOH . 
M 5 HOH B 40 1040 42 HOH HOH . 
M 5 HOH B 41 1041 87 HOH HOH . 
M 5 HOH B 42 1042 130 HOH HOH . 
M 5 HOH B 43 1043 139 HOH HOH . 
M 5 HOH B 44 1044 11 HOH HOH . 
M 5 HOH B 45 1045 51 HOH HOH . 
M 5 HOH B 46 1046 16 HOH HOH . 
M 5 HOH B 47 1047 71 HOH HOH . 
M 5 HOH B 48 1048 10 HOH HOH . 
M 5 HOH B 49 1049 132 HOH HOH . 
M 5 HOH B 50 1050 27 HOH HOH . 
M 5 HOH B 51 1051 43 HOH HOH . 
M 5 HOH B 52 1052 38 HOH HOH . 
M 5 HOH B 53 1053 32 HOH HOH . 
M 5 HOH B 54 1054 54 HOH HOH . 
M 5 HOH B 55 1055 89 HOH HOH . 
M 5 HOH B 56 1056 72 HOH HOH . 
M 5 HOH B 57 1057 77 HOH HOH . 
M 5 HOH B 58 1058 56 HOH HOH . 
M 5 HOH B 59 1059 61 HOH HOH . 
M 5 HOH B 60 1060 65 HOH HOH . 
M 5 HOH B 61 1061 26 HOH HOH . 
M 5 HOH B 62 1062 143 HOH HOH . 
M 5 HOH B 63 1063 120 HOH HOH . 
M 5 HOH B 64 1064 75 HOH HOH . 
M 5 HOH B 65 1065 108 HOH HOH . 
M 5 HOH B 66 1066 127 HOH HOH . 
M 5 HOH B 67 1067 112 HOH HOH . 
M 5 HOH B 68 1068 141 HOH HOH . 
M 5 HOH B 69 1069 128 HOH HOH . 
M 5 HOH B 70 1070 113 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 2.435 34.341 65.998 1 31.49 ? C1 GOL 904 B 1 
HETATM 2 O O1 GOL . . . H 4 2.536 32.935 66.205 1 30.49 ? O1 GOL 904 B 1 
HETATM 3 C C2 GOL . . . H 4 2.758 34.72 64.568 1 31.18 ? C2 GOL 904 B 1 
HETATM 4 O O2 GOL . . . H 4 2.012 33.898 63.673 1 32.33 ? O2 GOL 904 B 1 
HETATM 5 C C3 GOL . . . H 4 4.232 34.611 64.238 1 30.68 ? C3 GOL 904 B 1 
HETATM 6 O O3 GOL . . . H 4 5.002 35.598 64.918 1 31.81 ? O3 GOL 904 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           450 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#