data_6SJS # _model_server_result.job_id 23K_FybP2HwcVAb-kop44Q _model_server_result.datetime_utc '2024-11-01 19:35:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sjs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":907}' # _entry.id 6SJS # _exptl.entry_id 6SJS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6SJS _cell.length_a 76.16 _cell.length_b 84.26 _cell.length_c 86.71 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SJS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O TYR 26 A TYR 25 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? metalc ? metalc2 A OD1 ASP 261 A ASP 260 1_555 D NA NA . A NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.029 ? metalc ? metalc3 D NA NA . A NA 902 1_555 L O HOH . A HOH 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc4 D NA NA . A NA 902 1_555 L O HOH . A HOH 1022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc5 D NA NA . A NA 902 1_555 L O HOH . A HOH 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc6 D NA NA . A NA 902 1_555 L O HOH . A HOH 1035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.891 ? metalc ? metalc7 D NA NA . A NA 902 1_555 L O HOH . A HOH 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.062 ? metalc ? metalc8 B O LEU 58 B LEU 57 1_555 F NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc9 B OE1 GLN 61 B GLN 60 1_555 F NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? metalc ? metalc10 B OE1 GLU 62 B GLU 61 1_555 F NA NA . B NA 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6SJS _atom_sites.fract_transf_matrix[1][1] 0.01313 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011868 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011533 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 THH A 1 901 901 THH LIG . D 3 NA A 1 902 2 NA NA . E 2 THH B 1 901 901 THH LIG . F 3 NA B 1 902 1 NA NA . G 4 GOL B 1 903 3 GOL GOL . H 4 GOL B 1 904 5 GOL GOL . I 4 GOL B 1 905 6 GOL GOL . J 4 GOL B 1 906 7 GOL GOL . K 4 GOL B 1 907 8 GOL GOL . L 5 HOH A 1 1001 80 HOH HOH . L 5 HOH A 2 1002 138 HOH HOH . L 5 HOH A 3 1003 111 HOH HOH . L 5 HOH A 4 1004 23 HOH HOH . L 5 HOH A 5 1005 85 HOH HOH . L 5 HOH A 6 1006 91 HOH HOH . L 5 HOH A 7 1007 15 HOH HOH . L 5 HOH A 8 1008 97 HOH HOH . L 5 HOH A 9 1009 119 HOH HOH . L 5 HOH A 10 1010 20 HOH HOH . L 5 HOH A 11 1011 136 HOH HOH . L 5 HOH A 12 1012 92 HOH HOH . L 5 HOH A 13 1013 17 HOH HOH . L 5 HOH A 14 1014 24 HOH HOH . L 5 HOH A 15 1015 68 HOH HOH . L 5 HOH A 16 1016 48 HOH HOH . L 5 HOH A 17 1017 106 HOH HOH . L 5 HOH A 18 1018 94 HOH HOH . L 5 HOH A 19 1019 134 HOH HOH . L 5 HOH A 20 1020 34 HOH HOH . L 5 HOH A 21 1021 31 HOH HOH . L 5 HOH A 22 1022 45 HOH HOH . L 5 HOH A 23 1023 121 HOH HOH . L 5 HOH A 24 1024 63 HOH HOH . L 5 HOH A 25 1025 109 HOH HOH . L 5 HOH A 26 1026 66 HOH HOH . L 5 HOH A 27 1027 13 HOH HOH . L 5 HOH A 28 1028 110 HOH HOH . L 5 HOH A 29 1029 44 HOH HOH . L 5 HOH A 30 1030 145 HOH HOH . L 5 HOH A 31 1031 74 HOH HOH . L 5 HOH A 32 1032 14 HOH HOH . L 5 HOH A 33 1033 118 HOH HOH . L 5 HOH A 34 1034 60 HOH HOH . L 5 HOH A 35 1035 104 HOH HOH . L 5 HOH A 36 1036 90 HOH HOH . L 5 HOH A 37 1037 49 HOH HOH . L 5 HOH A 38 1038 133 HOH HOH . L 5 HOH A 39 1039 46 HOH HOH . L 5 HOH A 40 1040 84 HOH HOH . L 5 HOH A 41 1041 140 HOH HOH . L 5 HOH A 42 1042 116 HOH HOH . L 5 HOH A 43 1043 33 HOH HOH . L 5 HOH A 44 1044 124 HOH HOH . L 5 HOH A 45 1045 57 HOH HOH . L 5 HOH A 46 1046 41 HOH HOH . L 5 HOH A 47 1047 107 HOH HOH . L 5 HOH A 48 1048 78 HOH HOH . L 5 HOH A 49 1049 105 HOH HOH . L 5 HOH A 50 1050 40 HOH HOH . L 5 HOH A 51 1051 76 HOH HOH . L 5 HOH A 52 1052 95 HOH HOH . L 5 HOH A 53 1053 98 HOH HOH . L 5 HOH A 54 1054 100 HOH HOH . L 5 HOH A 55 1055 59 HOH HOH . L 5 HOH A 56 1056 81 HOH HOH . L 5 HOH A 57 1057 64 HOH HOH . L 5 HOH A 58 1058 79 HOH HOH . L 5 HOH A 59 1059 86 HOH HOH . L 5 HOH A 60 1060 126 HOH HOH . L 5 HOH A 61 1061 114 HOH HOH . L 5 HOH A 62 1062 135 HOH HOH . M 5 HOH B 1 1001 58 HOH HOH . M 5 HOH B 2 1002 39 HOH HOH . M 5 HOH B 3 1003 36 HOH HOH . M 5 HOH B 4 1004 137 HOH HOH . M 5 HOH B 5 1005 30 HOH HOH . M 5 HOH B 6 1006 53 HOH HOH . M 5 HOH B 7 1007 123 HOH HOH . M 5 HOH B 8 1008 73 HOH HOH . M 5 HOH B 9 1009 96 HOH HOH . M 5 HOH B 10 1010 19 HOH HOH . M 5 HOH B 11 1011 83 HOH HOH . M 5 HOH B 12 1012 102 HOH HOH . M 5 HOH B 13 1013 88 HOH HOH . M 5 HOH B 14 1014 142 HOH HOH . M 5 HOH B 15 1015 125 HOH HOH . M 5 HOH B 16 1016 47 HOH HOH . M 5 HOH B 17 1017 18 HOH HOH . M 5 HOH B 18 1018 50 HOH HOH . M 5 HOH B 19 1019 21 HOH HOH . M 5 HOH B 20 1020 146 HOH HOH . M 5 HOH B 21 1021 62 HOH HOH . M 5 HOH B 22 1022 122 HOH HOH . M 5 HOH B 23 1023 29 HOH HOH . M 5 HOH B 24 1024 25 HOH HOH . M 5 HOH B 25 1025 35 HOH HOH . M 5 HOH B 26 1026 101 HOH HOH . M 5 HOH B 27 1027 28 HOH HOH . M 5 HOH B 28 1028 82 HOH HOH . M 5 HOH B 29 1029 131 HOH HOH . M 5 HOH B 30 1030 69 HOH HOH . M 5 HOH B 31 1031 52 HOH HOH . M 5 HOH B 32 1032 22 HOH HOH . M 5 HOH B 33 1033 103 HOH HOH . M 5 HOH B 34 1034 93 HOH HOH . M 5 HOH B 35 1035 117 HOH HOH . M 5 HOH B 36 1036 37 HOH HOH . M 5 HOH B 37 1037 55 HOH HOH . M 5 HOH B 38 1038 99 HOH HOH . M 5 HOH B 39 1039 12 HOH HOH . M 5 HOH B 40 1040 42 HOH HOH . M 5 HOH B 41 1041 87 HOH HOH . M 5 HOH B 42 1042 130 HOH HOH . M 5 HOH B 43 1043 139 HOH HOH . M 5 HOH B 44 1044 11 HOH HOH . M 5 HOH B 45 1045 51 HOH HOH . M 5 HOH B 46 1046 16 HOH HOH . M 5 HOH B 47 1047 71 HOH HOH . M 5 HOH B 48 1048 10 HOH HOH . M 5 HOH B 49 1049 132 HOH HOH . M 5 HOH B 50 1050 27 HOH HOH . M 5 HOH B 51 1051 43 HOH HOH . M 5 HOH B 52 1052 38 HOH HOH . M 5 HOH B 53 1053 32 HOH HOH . M 5 HOH B 54 1054 54 HOH HOH . M 5 HOH B 55 1055 89 HOH HOH . M 5 HOH B 56 1056 72 HOH HOH . M 5 HOH B 57 1057 77 HOH HOH . M 5 HOH B 58 1058 56 HOH HOH . M 5 HOH B 59 1059 61 HOH HOH . M 5 HOH B 60 1060 65 HOH HOH . M 5 HOH B 61 1061 26 HOH HOH . M 5 HOH B 62 1062 143 HOH HOH . M 5 HOH B 63 1063 120 HOH HOH . M 5 HOH B 64 1064 75 HOH HOH . M 5 HOH B 65 1065 108 HOH HOH . M 5 HOH B 66 1066 127 HOH HOH . M 5 HOH B 67 1067 112 HOH HOH . M 5 HOH B 68 1068 141 HOH HOH . M 5 HOH B 69 1069 128 HOH HOH . M 5 HOH B 70 1070 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 4 22.776 51.526 67.204 1 53.62 ? C1 GOL 907 B 1 HETATM 2 O O1 GOL . . . K 4 22.36 50.632 66.175 1 50.7 ? O1 GOL 907 B 1 HETATM 3 C C2 GOL . . . K 4 23.96 50.98 67.975 1 57.02 ? C2 GOL 907 B 1 HETATM 4 O O2 GOL . . . K 4 23.54 49.873 68.773 1 57.35 ? O2 GOL 907 B 1 HETATM 5 C C3 GOL . . . K 4 25.113 50.563 67.085 1 58.72 ? C3 GOL 907 B 1 HETATM 6 O O3 GOL . . . K 4 26.029 49.708 67.766 1 60.05 ? O3 GOL 907 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 6 #