data_6SJY
#
_model_server_result.job_id            djpbxv2_oVMwX9g9p94JfA 
_model_server_result.datetime_utc      '2024-11-08 17:56:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sjy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    6SJY 
#
_exptl.entry_id    6SJY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SJY 
_cell.length_a            174.214 
_cell.length_b            174.214 
_cell.length_c            60.991 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SJY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,K 1 1,3 
C,H,I,J,M 2 1 
B,F,G,L 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_444 y-1/2,-x-1/2,z-1/4 0 1 0 -1 0 0 0 0 1 -87.107 -87.107 -15.24775 
3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 F N N 
? 2 H N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 151 n n 
C1 C2 GOL sing 152 n n 
C1 H11 GOL sing 153 n n 
C1 H12 GOL sing 154 n n 
O1 HO1 GOL sing 155 n n 
C2 O2 GOL sing 156 n n 
C2 C3 GOL sing 157 n n 
C2 H2 GOL sing 158 n n 
O2 HO2 GOL sing 159 n n 
C3 O3 GOL sing 160 n n 
C3 H31 GOL sing 161 n n 
C3 H32 GOL sing 162 n n 
O3 HO3 GOL sing 163 n n 
#
_atom_sites.entry_id                     6SJY 
_atom_sites.fract_transf_matrix[1][1]    0.00574 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016396 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GOL A 1 201 1 GOL GOL . 
E 3 9YT A 1 202 2 9YT NGA . 
F 2 GOL C 1 201 3 GOL GOL . 
G 3 9YT C 1 202 3 9YT NGA . 
H 2 GOL B 1 201 4 GOL GOL . 
I 3 9YT B 1 202 1 9YT NGA . 
J 4 TRS B 1 203 1 TRS TRS . 
K 5 HOH A 1 301 224 HOH HOH . 
K 5 HOH A 2 302 210 HOH HOH . 
K 5 HOH A 3 303 144 HOH HOH . 
K 5 HOH A 4 304 172 HOH HOH . 
K 5 HOH A 5 305 56 HOH HOH . 
K 5 HOH A 6 306 128 HOH HOH . 
K 5 HOH A 7 307 24 HOH HOH . 
K 5 HOH A 8 308 208 HOH HOH . 
K 5 HOH A 9 309 32 HOH HOH . 
K 5 HOH A 10 310 13 HOH HOH . 
K 5 HOH A 11 311 123 HOH HOH . 
K 5 HOH A 12 312 55 HOH HOH . 
K 5 HOH A 13 313 29 HOH HOH . 
K 5 HOH A 14 314 21 HOH HOH . 
K 5 HOH A 15 315 8 HOH HOH . 
K 5 HOH A 16 316 65 HOH HOH . 
K 5 HOH A 17 317 4 HOH HOH . 
K 5 HOH A 18 318 87 HOH HOH . 
K 5 HOH A 19 319 81 HOH HOH . 
K 5 HOH A 20 320 23 HOH HOH . 
K 5 HOH A 21 321 209 HOH HOH . 
K 5 HOH A 22 322 141 HOH HOH . 
K 5 HOH A 23 323 47 HOH HOH . 
K 5 HOH A 24 324 52 HOH HOH . 
K 5 HOH A 25 325 20 HOH HOH . 
K 5 HOH A 26 326 187 HOH HOH . 
K 5 HOH A 27 327 73 HOH HOH . 
K 5 HOH A 28 328 97 HOH HOH . 
K 5 HOH A 29 329 122 HOH HOH . 
K 5 HOH A 30 330 180 HOH HOH . 
K 5 HOH A 31 331 173 HOH HOH . 
K 5 HOH A 32 332 44 HOH HOH . 
K 5 HOH A 33 333 142 HOH HOH . 
K 5 HOH A 34 334 67 HOH HOH . 
K 5 HOH A 35 335 35 HOH HOH . 
K 5 HOH A 36 336 80 HOH HOH . 
K 5 HOH A 37 337 196 HOH HOH . 
K 5 HOH A 38 338 130 HOH HOH . 
K 5 HOH A 39 339 63 HOH HOH . 
K 5 HOH A 40 340 90 HOH HOH . 
K 5 HOH A 41 341 126 HOH HOH . 
K 5 HOH A 42 342 89 HOH HOH . 
K 5 HOH A 43 343 132 HOH HOH . 
K 5 HOH A 44 344 178 HOH HOH . 
K 5 HOH A 45 345 145 HOH HOH . 
K 5 HOH A 46 346 121 HOH HOH . 
K 5 HOH A 47 347 143 HOH HOH . 
K 5 HOH A 48 348 148 HOH HOH . 
K 5 HOH A 49 349 214 HOH HOH . 
K 5 HOH A 50 350 147 HOH HOH . 
K 5 HOH A 51 351 228 HOH HOH . 
K 5 HOH A 52 352 146 HOH HOH . 
K 5 HOH A 53 353 131 HOH HOH . 
K 5 HOH A 54 354 190 HOH HOH . 
K 5 HOH A 55 355 213 HOH HOH . 
K 5 HOH A 56 356 105 HOH HOH . 
K 5 HOH A 57 357 227 HOH HOH . 
K 5 HOH A 58 358 215 HOH HOH . 
K 5 HOH A 59 359 127 HOH HOH . 
K 5 HOH A 60 360 94 HOH HOH . 
L 5 HOH C 1 301 108 HOH HOH . 
L 5 HOH C 2 302 156 HOH HOH . 
L 5 HOH C 3 303 107 HOH HOH . 
L 5 HOH C 4 304 42 HOH HOH . 
L 5 HOH C 5 305 189 HOH HOH . 
L 5 HOH C 6 306 185 HOH HOH . 
L 5 HOH C 7 307 91 HOH HOH . 
L 5 HOH C 8 308 50 HOH HOH . 
L 5 HOH C 9 309 76 HOH HOH . 
L 5 HOH C 10 310 22 HOH HOH . 
L 5 HOH C 11 311 150 HOH HOH . 
L 5 HOH C 12 312 62 HOH HOH . 
L 5 HOH C 13 313 43 HOH HOH . 
L 5 HOH C 14 314 2 HOH HOH . 
L 5 HOH C 15 315 113 HOH HOH . 
L 5 HOH C 16 316 40 HOH HOH . 
L 5 HOH C 17 317 5 HOH HOH . 
L 5 HOH C 18 318 103 HOH HOH . 
L 5 HOH C 19 319 99 HOH HOH . 
L 5 HOH C 20 320 114 HOH HOH . 
L 5 HOH C 21 321 152 HOH HOH . 
L 5 HOH C 22 322 12 HOH HOH . 
L 5 HOH C 23 323 10 HOH HOH . 
L 5 HOH C 24 324 100 HOH HOH . 
L 5 HOH C 25 325 34 HOH HOH . 
L 5 HOH C 26 326 78 HOH HOH . 
L 5 HOH C 27 327 191 HOH HOH . 
L 5 HOH C 28 328 188 HOH HOH . 
L 5 HOH C 29 329 199 HOH HOH . 
L 5 HOH C 30 330 102 HOH HOH . 
L 5 HOH C 31 331 92 HOH HOH . 
L 5 HOH C 32 332 18 HOH HOH . 
L 5 HOH C 33 333 26 HOH HOH . 
L 5 HOH C 34 334 96 HOH HOH . 
L 5 HOH C 35 335 61 HOH HOH . 
L 5 HOH C 36 336 93 HOH HOH . 
L 5 HOH C 37 337 33 HOH HOH . 
L 5 HOH C 38 338 82 HOH HOH . 
L 5 HOH C 39 339 223 HOH HOH . 
L 5 HOH C 40 340 74 HOH HOH . 
L 5 HOH C 41 341 71 HOH HOH . 
L 5 HOH C 42 342 49 HOH HOH . 
L 5 HOH C 43 343 236 HOH HOH . 
L 5 HOH C 44 344 77 HOH HOH . 
L 5 HOH C 45 345 66 HOH HOH . 
L 5 HOH C 46 346 193 HOH HOH . 
L 5 HOH C 47 347 70 HOH HOH . 
L 5 HOH C 48 348 151 HOH HOH . 
L 5 HOH C 49 349 46 HOH HOH . 
L 5 HOH C 50 350 31 HOH HOH . 
L 5 HOH C 51 351 17 HOH HOH . 
L 5 HOH C 52 352 30 HOH HOH . 
L 5 HOH C 53 353 39 HOH HOH . 
L 5 HOH C 54 354 174 HOH HOH . 
L 5 HOH C 55 355 68 HOH HOH . 
L 5 HOH C 56 356 16 HOH HOH . 
L 5 HOH C 57 357 57 HOH HOH . 
L 5 HOH C 58 358 138 HOH HOH . 
L 5 HOH C 59 359 75 HOH HOH . 
L 5 HOH C 60 360 64 HOH HOH . 
L 5 HOH C 61 361 153 HOH HOH . 
L 5 HOH C 62 362 222 HOH HOH . 
L 5 HOH C 63 363 129 HOH HOH . 
L 5 HOH C 64 364 186 HOH HOH . 
L 5 HOH C 65 365 101 HOH HOH . 
L 5 HOH C 66 366 111 HOH HOH . 
L 5 HOH C 67 367 109 HOH HOH . 
L 5 HOH C 68 368 85 HOH HOH . 
L 5 HOH C 69 369 98 HOH HOH . 
L 5 HOH C 70 370 216 HOH HOH . 
L 5 HOH C 71 371 212 HOH HOH . 
L 5 HOH C 72 372 194 HOH HOH . 
L 5 HOH C 73 373 184 HOH HOH . 
L 5 HOH C 74 374 159 HOH HOH . 
L 5 HOH C 75 375 154 HOH HOH . 
L 5 HOH C 76 376 206 HOH HOH . 
L 5 HOH C 77 377 86 HOH HOH . 
L 5 HOH C 78 378 155 HOH HOH . 
L 5 HOH C 79 379 117 HOH HOH . 
L 5 HOH C 80 380 235 HOH HOH . 
L 5 HOH C 81 381 157 HOH HOH . 
L 5 HOH C 82 382 217 HOH HOH . 
L 5 HOH C 83 383 233 HOH HOH . 
M 5 HOH B 1 301 166 HOH HOH . 
M 5 HOH B 2 302 11 HOH HOH . 
M 5 HOH B 3 303 38 HOH HOH . 
M 5 HOH B 4 304 54 HOH HOH . 
M 5 HOH B 5 305 6 HOH HOH . 
M 5 HOH B 6 306 84 HOH HOH . 
M 5 HOH B 7 307 118 HOH HOH . 
M 5 HOH B 8 308 7 HOH HOH . 
M 5 HOH B 9 309 3 HOH HOH . 
M 5 HOH B 10 310 192 HOH HOH . 
M 5 HOH B 11 311 115 HOH HOH . 
M 5 HOH B 12 312 200 HOH HOH . 
M 5 HOH B 13 313 170 HOH HOH . 
M 5 HOH B 14 314 133 HOH HOH . 
M 5 HOH B 15 315 119 HOH HOH . 
M 5 HOH B 16 316 25 HOH HOH . 
M 5 HOH B 17 317 45 HOH HOH . 
M 5 HOH B 18 318 37 HOH HOH . 
M 5 HOH B 19 319 41 HOH HOH . 
M 5 HOH B 20 320 197 HOH HOH . 
M 5 HOH B 21 321 88 HOH HOH . 
M 5 HOH B 22 322 69 HOH HOH . 
M 5 HOH B 23 323 51 HOH HOH . 
M 5 HOH B 24 324 15 HOH HOH . 
M 5 HOH B 25 325 140 HOH HOH . 
M 5 HOH B 26 326 207 HOH HOH . 
M 5 HOH B 27 327 1 HOH HOH . 
M 5 HOH B 28 328 9 HOH HOH . 
M 5 HOH B 29 329 120 HOH HOH . 
M 5 HOH B 30 330 124 HOH HOH . 
M 5 HOH B 31 331 79 HOH HOH . 
M 5 HOH B 32 332 19 HOH HOH . 
M 5 HOH B 33 333 176 HOH HOH . 
M 5 HOH B 34 334 95 HOH HOH . 
M 5 HOH B 35 335 59 HOH HOH . 
M 5 HOH B 36 336 163 HOH HOH . 
M 5 HOH B 37 337 106 HOH HOH . 
M 5 HOH B 38 338 139 HOH HOH . 
M 5 HOH B 39 339 58 HOH HOH . 
M 5 HOH B 40 340 162 HOH HOH . 
M 5 HOH B 41 341 175 HOH HOH . 
M 5 HOH B 42 342 27 HOH HOH . 
M 5 HOH B 43 343 219 HOH HOH . 
M 5 HOH B 44 344 218 HOH HOH . 
M 5 HOH B 45 345 48 HOH HOH . 
M 5 HOH B 46 346 137 HOH HOH . 
M 5 HOH B 47 347 60 HOH HOH . 
M 5 HOH B 48 348 83 HOH HOH . 
M 5 HOH B 49 349 36 HOH HOH . 
M 5 HOH B 50 350 116 HOH HOH . 
M 5 HOH B 51 351 161 HOH HOH . 
M 5 HOH B 52 352 160 HOH HOH . 
M 5 HOH B 53 353 53 HOH HOH . 
M 5 HOH B 54 354 14 HOH HOH . 
M 5 HOH B 55 355 164 HOH HOH . 
M 5 HOH B 56 356 167 HOH HOH . 
M 5 HOH B 57 357 28 HOH HOH . 
M 5 HOH B 58 358 181 HOH HOH . 
M 5 HOH B 59 359 231 HOH HOH . 
M 5 HOH B 60 360 229 HOH HOH . 
M 5 HOH B 61 361 165 HOH HOH . 
M 5 HOH B 62 362 158 HOH HOH . 
M 5 HOH B 63 363 104 HOH HOH . 
M 5 HOH B 64 364 168 HOH HOH . 
M 5 HOH B 65 365 177 HOH HOH . 
M 5 HOH B 66 366 220 HOH HOH . 
M 5 HOH B 67 367 232 HOH HOH . 
M 5 HOH B 68 368 221 HOH HOH . 
M 5 HOH B 69 369 135 HOH HOH . 
M 5 HOH B 70 370 182 HOH HOH . 
M 5 HOH B 71 371 169 HOH HOH . 
M 5 HOH B 72 372 134 HOH HOH . 
M 5 HOH B 73 373 230 HOH HOH . 
M 5 HOH B 74 374 234 HOH HOH . 
M 5 HOH B 75 375 211 HOH HOH . 
M 5 HOH B 76 376 110 HOH HOH . 
M 5 HOH B 77 377 179 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 2 -35.562 -16.404 -12.8 1 55.15 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . D 2 -36.695 -17.29 -12.605 1 54.68 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . D 2 -34.244 -16.981 -12.29 1 58.35 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . D 2 -34.113 -16.892 -10.827 1 60.42 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . D 2 -33.135 -16.218 -13.007 1 55.37 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . D 2 -31.832 -16.544 -12.487 1 47.83 ? O3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#