data_6SJY
#
_model_server_result.job_id            PuIJlsxajEJkwCqX-byM0A 
_model_server_result.datetime_utc      '2024-11-30 19:57:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6sjy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":202}' 
#
_entry.id    6SJY 
#
_exptl.entry_id    6SJY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              160.171 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-4-acetamido-2-azanyl-butanoic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6SJY 
_cell.length_a            174.214 
_cell.length_b            174.214 
_cell.length_c            60.991 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6SJY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,K 1 1,3 
C,H,I,J,M 2 1 
B,F,G,L 2 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_444 y-1/2,-x-1/2,z-1/4 0 1 0 -1 0 0 0 0 1 -87.107 -87.107 -15.24775 
3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
_chem_comp.formula           'C6 H12 N2 O3' 
_chem_comp.formula_weight    160.171 
_chem_comp.id                9YT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-4-acetamido-2-azanyl-butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 C09 9YT doub 1 n n 
O10 C09 9YT sing 2 n n 
C09 C07 9YT sing 3 n n 
C06 C07 9YT sing 4 n n 
C06 C05 9YT sing 5 n n 
C07 N08 9YT sing 6 n n 
C05 N04 9YT sing 7 n n 
N04 C02 9YT sing 8 n n 
C02 O03 9YT doub 9 n n 
C02 C01 9YT sing 10 n n 
C01 H013 9YT sing 11 n n 
C01 H011 9YT sing 12 n n 
C01 H012 9YT sing 13 n n 
N04 H041 9YT sing 14 n n 
C05 H051 9YT sing 15 n n 
C05 H052 9YT sing 16 n n 
C06 H062 9YT sing 17 n n 
C06 H061 9YT sing 18 n n 
C07 H071 9YT sing 19 n n 
N08 H082 9YT sing 20 n n 
N08 H1 9YT sing 21 n n 
O10 H2 9YT sing 22 n n 
#
_atom_sites.entry_id                     6SJY 
_atom_sites.fract_transf_matrix[1][1]    0.00574 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016396 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 GOL A 1 201 1 GOL GOL . 
E 3 9YT A 1 202 2 9YT NGA . 
F 2 GOL C 1 201 3 GOL GOL . 
G 3 9YT C 1 202 3 9YT NGA . 
H 2 GOL B 1 201 4 GOL GOL . 
I 3 9YT B 1 202 1 9YT NGA . 
J 4 TRS B 1 203 1 TRS TRS . 
K 5 HOH A 1 301 224 HOH HOH . 
K 5 HOH A 2 302 210 HOH HOH . 
K 5 HOH A 3 303 144 HOH HOH . 
K 5 HOH A 4 304 172 HOH HOH . 
K 5 HOH A 5 305 56 HOH HOH . 
K 5 HOH A 6 306 128 HOH HOH . 
K 5 HOH A 7 307 24 HOH HOH . 
K 5 HOH A 8 308 208 HOH HOH . 
K 5 HOH A 9 309 32 HOH HOH . 
K 5 HOH A 10 310 13 HOH HOH . 
K 5 HOH A 11 311 123 HOH HOH . 
K 5 HOH A 12 312 55 HOH HOH . 
K 5 HOH A 13 313 29 HOH HOH . 
K 5 HOH A 14 314 21 HOH HOH . 
K 5 HOH A 15 315 8 HOH HOH . 
K 5 HOH A 16 316 65 HOH HOH . 
K 5 HOH A 17 317 4 HOH HOH . 
K 5 HOH A 18 318 87 HOH HOH . 
K 5 HOH A 19 319 81 HOH HOH . 
K 5 HOH A 20 320 23 HOH HOH . 
K 5 HOH A 21 321 209 HOH HOH . 
K 5 HOH A 22 322 141 HOH HOH . 
K 5 HOH A 23 323 47 HOH HOH . 
K 5 HOH A 24 324 52 HOH HOH . 
K 5 HOH A 25 325 20 HOH HOH . 
K 5 HOH A 26 326 187 HOH HOH . 
K 5 HOH A 27 327 73 HOH HOH . 
K 5 HOH A 28 328 97 HOH HOH . 
K 5 HOH A 29 329 122 HOH HOH . 
K 5 HOH A 30 330 180 HOH HOH . 
K 5 HOH A 31 331 173 HOH HOH . 
K 5 HOH A 32 332 44 HOH HOH . 
K 5 HOH A 33 333 142 HOH HOH . 
K 5 HOH A 34 334 67 HOH HOH . 
K 5 HOH A 35 335 35 HOH HOH . 
K 5 HOH A 36 336 80 HOH HOH . 
K 5 HOH A 37 337 196 HOH HOH . 
K 5 HOH A 38 338 130 HOH HOH . 
K 5 HOH A 39 339 63 HOH HOH . 
K 5 HOH A 40 340 90 HOH HOH . 
K 5 HOH A 41 341 126 HOH HOH . 
K 5 HOH A 42 342 89 HOH HOH . 
K 5 HOH A 43 343 132 HOH HOH . 
K 5 HOH A 44 344 178 HOH HOH . 
K 5 HOH A 45 345 145 HOH HOH . 
K 5 HOH A 46 346 121 HOH HOH . 
K 5 HOH A 47 347 143 HOH HOH . 
K 5 HOH A 48 348 148 HOH HOH . 
K 5 HOH A 49 349 214 HOH HOH . 
K 5 HOH A 50 350 147 HOH HOH . 
K 5 HOH A 51 351 228 HOH HOH . 
K 5 HOH A 52 352 146 HOH HOH . 
K 5 HOH A 53 353 131 HOH HOH . 
K 5 HOH A 54 354 190 HOH HOH . 
K 5 HOH A 55 355 213 HOH HOH . 
K 5 HOH A 56 356 105 HOH HOH . 
K 5 HOH A 57 357 227 HOH HOH . 
K 5 HOH A 58 358 215 HOH HOH . 
K 5 HOH A 59 359 127 HOH HOH . 
K 5 HOH A 60 360 94 HOH HOH . 
L 5 HOH C 1 301 108 HOH HOH . 
L 5 HOH C 2 302 156 HOH HOH . 
L 5 HOH C 3 303 107 HOH HOH . 
L 5 HOH C 4 304 42 HOH HOH . 
L 5 HOH C 5 305 189 HOH HOH . 
L 5 HOH C 6 306 185 HOH HOH . 
L 5 HOH C 7 307 91 HOH HOH . 
L 5 HOH C 8 308 50 HOH HOH . 
L 5 HOH C 9 309 76 HOH HOH . 
L 5 HOH C 10 310 22 HOH HOH . 
L 5 HOH C 11 311 150 HOH HOH . 
L 5 HOH C 12 312 62 HOH HOH . 
L 5 HOH C 13 313 43 HOH HOH . 
L 5 HOH C 14 314 2 HOH HOH . 
L 5 HOH C 15 315 113 HOH HOH . 
L 5 HOH C 16 316 40 HOH HOH . 
L 5 HOH C 17 317 5 HOH HOH . 
L 5 HOH C 18 318 103 HOH HOH . 
L 5 HOH C 19 319 99 HOH HOH . 
L 5 HOH C 20 320 114 HOH HOH . 
L 5 HOH C 21 321 152 HOH HOH . 
L 5 HOH C 22 322 12 HOH HOH . 
L 5 HOH C 23 323 10 HOH HOH . 
L 5 HOH C 24 324 100 HOH HOH . 
L 5 HOH C 25 325 34 HOH HOH . 
L 5 HOH C 26 326 78 HOH HOH . 
L 5 HOH C 27 327 191 HOH HOH . 
L 5 HOH C 28 328 188 HOH HOH . 
L 5 HOH C 29 329 199 HOH HOH . 
L 5 HOH C 30 330 102 HOH HOH . 
L 5 HOH C 31 331 92 HOH HOH . 
L 5 HOH C 32 332 18 HOH HOH . 
L 5 HOH C 33 333 26 HOH HOH . 
L 5 HOH C 34 334 96 HOH HOH . 
L 5 HOH C 35 335 61 HOH HOH . 
L 5 HOH C 36 336 93 HOH HOH . 
L 5 HOH C 37 337 33 HOH HOH . 
L 5 HOH C 38 338 82 HOH HOH . 
L 5 HOH C 39 339 223 HOH HOH . 
L 5 HOH C 40 340 74 HOH HOH . 
L 5 HOH C 41 341 71 HOH HOH . 
L 5 HOH C 42 342 49 HOH HOH . 
L 5 HOH C 43 343 236 HOH HOH . 
L 5 HOH C 44 344 77 HOH HOH . 
L 5 HOH C 45 345 66 HOH HOH . 
L 5 HOH C 46 346 193 HOH HOH . 
L 5 HOH C 47 347 70 HOH HOH . 
L 5 HOH C 48 348 151 HOH HOH . 
L 5 HOH C 49 349 46 HOH HOH . 
L 5 HOH C 50 350 31 HOH HOH . 
L 5 HOH C 51 351 17 HOH HOH . 
L 5 HOH C 52 352 30 HOH HOH . 
L 5 HOH C 53 353 39 HOH HOH . 
L 5 HOH C 54 354 174 HOH HOH . 
L 5 HOH C 55 355 68 HOH HOH . 
L 5 HOH C 56 356 16 HOH HOH . 
L 5 HOH C 57 357 57 HOH HOH . 
L 5 HOH C 58 358 138 HOH HOH . 
L 5 HOH C 59 359 75 HOH HOH . 
L 5 HOH C 60 360 64 HOH HOH . 
L 5 HOH C 61 361 153 HOH HOH . 
L 5 HOH C 62 362 222 HOH HOH . 
L 5 HOH C 63 363 129 HOH HOH . 
L 5 HOH C 64 364 186 HOH HOH . 
L 5 HOH C 65 365 101 HOH HOH . 
L 5 HOH C 66 366 111 HOH HOH . 
L 5 HOH C 67 367 109 HOH HOH . 
L 5 HOH C 68 368 85 HOH HOH . 
L 5 HOH C 69 369 98 HOH HOH . 
L 5 HOH C 70 370 216 HOH HOH . 
L 5 HOH C 71 371 212 HOH HOH . 
L 5 HOH C 72 372 194 HOH HOH . 
L 5 HOH C 73 373 184 HOH HOH . 
L 5 HOH C 74 374 159 HOH HOH . 
L 5 HOH C 75 375 154 HOH HOH . 
L 5 HOH C 76 376 206 HOH HOH . 
L 5 HOH C 77 377 86 HOH HOH . 
L 5 HOH C 78 378 155 HOH HOH . 
L 5 HOH C 79 379 117 HOH HOH . 
L 5 HOH C 80 380 235 HOH HOH . 
L 5 HOH C 81 381 157 HOH HOH . 
L 5 HOH C 82 382 217 HOH HOH . 
L 5 HOH C 83 383 233 HOH HOH . 
M 5 HOH B 1 301 166 HOH HOH . 
M 5 HOH B 2 302 11 HOH HOH . 
M 5 HOH B 3 303 38 HOH HOH . 
M 5 HOH B 4 304 54 HOH HOH . 
M 5 HOH B 5 305 6 HOH HOH . 
M 5 HOH B 6 306 84 HOH HOH . 
M 5 HOH B 7 307 118 HOH HOH . 
M 5 HOH B 8 308 7 HOH HOH . 
M 5 HOH B 9 309 3 HOH HOH . 
M 5 HOH B 10 310 192 HOH HOH . 
M 5 HOH B 11 311 115 HOH HOH . 
M 5 HOH B 12 312 200 HOH HOH . 
M 5 HOH B 13 313 170 HOH HOH . 
M 5 HOH B 14 314 133 HOH HOH . 
M 5 HOH B 15 315 119 HOH HOH . 
M 5 HOH B 16 316 25 HOH HOH . 
M 5 HOH B 17 317 45 HOH HOH . 
M 5 HOH B 18 318 37 HOH HOH . 
M 5 HOH B 19 319 41 HOH HOH . 
M 5 HOH B 20 320 197 HOH HOH . 
M 5 HOH B 21 321 88 HOH HOH . 
M 5 HOH B 22 322 69 HOH HOH . 
M 5 HOH B 23 323 51 HOH HOH . 
M 5 HOH B 24 324 15 HOH HOH . 
M 5 HOH B 25 325 140 HOH HOH . 
M 5 HOH B 26 326 207 HOH HOH . 
M 5 HOH B 27 327 1 HOH HOH . 
M 5 HOH B 28 328 9 HOH HOH . 
M 5 HOH B 29 329 120 HOH HOH . 
M 5 HOH B 30 330 124 HOH HOH . 
M 5 HOH B 31 331 79 HOH HOH . 
M 5 HOH B 32 332 19 HOH HOH . 
M 5 HOH B 33 333 176 HOH HOH . 
M 5 HOH B 34 334 95 HOH HOH . 
M 5 HOH B 35 335 59 HOH HOH . 
M 5 HOH B 36 336 163 HOH HOH . 
M 5 HOH B 37 337 106 HOH HOH . 
M 5 HOH B 38 338 139 HOH HOH . 
M 5 HOH B 39 339 58 HOH HOH . 
M 5 HOH B 40 340 162 HOH HOH . 
M 5 HOH B 41 341 175 HOH HOH . 
M 5 HOH B 42 342 27 HOH HOH . 
M 5 HOH B 43 343 219 HOH HOH . 
M 5 HOH B 44 344 218 HOH HOH . 
M 5 HOH B 45 345 48 HOH HOH . 
M 5 HOH B 46 346 137 HOH HOH . 
M 5 HOH B 47 347 60 HOH HOH . 
M 5 HOH B 48 348 83 HOH HOH . 
M 5 HOH B 49 349 36 HOH HOH . 
M 5 HOH B 50 350 116 HOH HOH . 
M 5 HOH B 51 351 161 HOH HOH . 
M 5 HOH B 52 352 160 HOH HOH . 
M 5 HOH B 53 353 53 HOH HOH . 
M 5 HOH B 54 354 14 HOH HOH . 
M 5 HOH B 55 355 164 HOH HOH . 
M 5 HOH B 56 356 167 HOH HOH . 
M 5 HOH B 57 357 28 HOH HOH . 
M 5 HOH B 58 358 181 HOH HOH . 
M 5 HOH B 59 359 231 HOH HOH . 
M 5 HOH B 60 360 229 HOH HOH . 
M 5 HOH B 61 361 165 HOH HOH . 
M 5 HOH B 62 362 158 HOH HOH . 
M 5 HOH B 63 363 104 HOH HOH . 
M 5 HOH B 64 364 168 HOH HOH . 
M 5 HOH B 65 365 177 HOH HOH . 
M 5 HOH B 66 366 220 HOH HOH . 
M 5 HOH B 67 367 232 HOH HOH . 
M 5 HOH B 68 368 221 HOH HOH . 
M 5 HOH B 69 369 135 HOH HOH . 
M 5 HOH B 70 370 182 HOH HOH . 
M 5 HOH B 71 371 169 HOH HOH . 
M 5 HOH B 72 372 134 HOH HOH . 
M 5 HOH B 73 373 230 HOH HOH . 
M 5 HOH B 74 374 234 HOH HOH . 
M 5 HOH B 75 375 211 HOH HOH . 
M 5 HOH B 76 376 110 HOH HOH . 
M 5 HOH B 77 377 179 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 9YT . . . I 3 -72.309 -22.203 3.277 1 70.74 ? C01 9YT 202 B 1 
HETATM 2 C C02 9YT . . . I 3 -73.255 -20.986 3.224 1 78.53 ? C02 9YT 202 B 1 
HETATM 3 O O03 9YT . . . I 3 -73.942 -20.799 4.176 1 58.99 ? O03 9YT 202 B 1 
HETATM 4 N N04 9YT . . . I 3 -73.429 -20.072 2.068 1 90.36 ? N04 9YT 202 B 1 
HETATM 5 C C05 9YT . . . I 3 -72.68 -20.119 0.809 1 79.59 ? C05 9YT 202 B 1 
HETATM 6 C C06 9YT . . . I 3 -73.568 -19.96 -0.453 1 87.09 ? C06 9YT 202 B 1 
HETATM 7 C C07 9YT . . . I 3 -74.614 -18.827 -0.743 1 74.12 ? C07 9YT 202 B 1 
HETATM 8 N N08 9YT . . . I 3 -74.195 -17.51 -0.285 1 69.37 ? N08 9YT 202 B 1 
HETATM 9 C C09 9YT . . . I 3 -76.058 -19.282 -0.348 1 75.97 ? C09 9YT 202 B 1 
HETATM 10 O O10 9YT . . . I 3 -76.744 -18.943 0.705 1 67.85 ? O10 9YT 202 B 1 
HETATM 11 O O11 9YT . . . I 3 -76.566 -20.084 -1.169 1 75.71 ? O11 9YT 202 B 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           444 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           11 
#