data_6SK3 # _model_server_result.job_id xQBsDQT53hInE39T3_kaWg _model_server_result.datetime_utc '2024-11-05 04:48:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 6SK3 # _exptl.entry_id 6SK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 977.89 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRADECANOYL-COA _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.25 _cell.angle_gamma 90 _cell.entry_id 6SK3 _cell.length_a 91.806 _cell.length_b 58.074 _cell.length_c 148.212 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,J,L 1 1 B,D,G,H,I,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id H _struct_conn.ptnr1_label_atom_id O9A _struct_conn.ptnr1_label_comp_id MYA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id MYA _struct_conn.ptnr1_auth_seq_id 502 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.978 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C35 H62 N7 O17 P3 S' _chem_comp.formula_weight 977.89 _chem_comp.id MYA _chem_comp.mon_nstd_flag . _chem_comp.name TETRADECANOYL-COA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MYRISTOYL-COA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2M S1 MYA sing 250 n n S1 C2 MYA sing 251 n n C2 C3 MYA sing 252 n n C2 H2 MYA sing 253 n n C2 H2A MYA sing 254 n n C3 N4 MYA sing 255 n n C3 H3 MYA sing 256 n n C3 H3A MYA sing 257 n n N4 C5 MYA sing 258 n n N4 HN4 MYA sing 259 n n O5 C5 MYA doub 260 n n C5 C6 MYA sing 261 n n C6 C7 MYA sing 262 n n C6 H6 MYA sing 263 n n C6 H6A MYA sing 264 n n N8 C7 MYA sing 265 n n C7 H7 MYA sing 266 n n C7 H7A MYA sing 267 n n C9 N8 MYA sing 268 n n N8 HN8 MYA sing 269 n n C10 C9 MYA sing 270 n n C9 O9 MYA doub 271 n n C11 C10 MYA sing 272 n n O10 C10 MYA sing 273 n n C10 H10 MYA sing 274 n n O10 HO10 MYA sing 275 n n C12 C11 MYA sing 276 n n C13 C11 MYA sing 277 n n C11 C14 MYA sing 278 n n C12 O6A MYA sing 279 n n C12 H12 MYA sing 280 n n C12 H12A MYA sing 281 n n C13 H13 MYA sing 282 n n C13 H13A MYA sing 283 n n C13 H13B MYA sing 284 n n C14 H14 MYA sing 285 n n C14 H14A MYA sing 286 n n C14 H14B MYA sing 287 n n C2A N1A MYA doub 288 n y N1A C6A MYA sing 289 n y P1A O1A MYA sing 290 n n O1A HO1A MYA sing 291 n n O5X P1A MYA sing 292 n n O2A P1A MYA doub 293 n n P1A O3A MYA sing 294 n n C2X C1X MYA sing 295 n n C1X O4X MYA sing 296 n n C1X N9A MYA sing 297 n n C1X H1X MYA sing 298 n n N3A C2A MYA sing 299 n y C2A H2AA MYA sing 300 n n O3A P2A MYA sing 301 n n O6A P2A MYA sing 302 n n P2A O4A MYA doub 303 n n P2A O5A MYA sing 304 n n C3M C2M MYA sing 305 n n C2M O2M MYA doub 306 n n O2X C2X MYA sing 307 n n C3X C2X MYA sing 308 n n C2X H2X MYA sing 309 n n O2X HO2X MYA sing 310 n n N3A C4A MYA doub 311 n y C4M C3M MYA sing 312 n n C3M H3M MYA sing 313 n n C3M H3MA MYA sing 314 n n O3X C3X MYA sing 315 n n C3X C4X MYA sing 316 n n C3X H3X MYA sing 317 n n P3X O3X MYA sing 318 n n O9A P3X MYA doub 319 n n O8A P3X MYA sing 320 n n P3X O7A MYA sing 321 n n C4A N9A MYA sing 322 n y C4A C5A MYA sing 323 n y C5M C4M MYA sing 324 n n C4M H4M MYA sing 325 n n C4M H4MA MYA sing 326 n n C4X O4X MYA sing 327 n n C4X C5X MYA sing 328 n n C4X H4X MYA sing 329 n n C5A C6A MYA doub 330 n y C5A N7A MYA sing 331 n y O5A HO5A MYA sing 332 n n C6M C5M MYA sing 333 n n C5M H5M MYA sing 334 n n C5M H5MA MYA sing 335 n n C5X O5X MYA sing 336 n n C5X H5X MYA sing 337 n n C5X H5XA MYA sing 338 n n C6A N6A MYA sing 339 n n N6A HN6A MYA sing 340 n n N6A HN6B MYA sing 341 n n C7M C6M MYA sing 342 n n C6M H6M MYA sing 343 n n C6M H6MA MYA sing 344 n n C8A N7A MYA doub 345 n y O7A HO7A MYA sing 346 n n C8M C7M MYA sing 347 n n C7M H7M MYA sing 348 n n C7M H7MA MYA sing 349 n n N9A C8A MYA sing 350 n y C8A H8A MYA sing 351 n n O8A HO8A MYA sing 352 n n C9M C8M MYA sing 353 n n C8M H8M MYA sing 354 n n C8M H8MA MYA sing 355 n n CAM C9M MYA sing 356 n n C9M H9M MYA sing 357 n n C9M H9MA MYA sing 358 n n CAM CBM MYA sing 359 n n CAM HAM MYA sing 360 n n CAM HAMA MYA sing 361 n n CCM CBM MYA sing 362 n n CBM HBM MYA sing 363 n n CBM HBMA MYA sing 364 n n CDM CCM MYA sing 365 n n CCM HCM MYA sing 366 n n CCM HCMA MYA sing 367 n n CEM CDM MYA sing 368 n n CDM HDM MYA sing 369 n n CDM HDMA MYA sing 370 n n CFM CEM MYA sing 371 n n CEM HEM MYA sing 372 n n CEM HEMA MYA sing 373 n n CFM HFM MYA sing 374 n n CFM HFMA MYA sing 375 n n CFM HFMB MYA sing 376 n n # _atom_sites.entry_id 6SK3 _atom_sites.fract_transf_matrix[1][1] 0.010893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000428 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 501 503 GOL GOL . F 4 MYA A 1 502 501 MYA MYA . G 3 GOL B 1 501 503 GOL GOL . H 4 MYA B 1 502 501 MYA MYA . I 5 MG B 1 503 1 MG MG . J 6 HOH A 1 601 12 HOH HOH . J 6 HOH A 2 602 14 HOH HOH . J 6 HOH A 3 603 9 HOH HOH . J 6 HOH A 4 604 15 HOH HOH . J 6 HOH A 5 605 8 HOH HOH . J 6 HOH A 6 606 13 HOH HOH . J 6 HOH A 7 607 2 HOH HOH . J 6 HOH A 8 608 5 HOH HOH . J 6 HOH A 9 609 11 HOH HOH . K 6 HOH B 1 601 16 HOH HOH . K 6 HOH B 2 602 4 HOH HOH . K 6 HOH B 3 603 7 HOH HOH . K 6 HOH B 4 604 10 HOH HOH . L 6 HOH C 1 101 1 HOH HOH . M 6 HOH D 1 101 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 MYA . . . F 4 12.924 -32.183 -57.296 1 31.79 ? S1 MYA 502 A 1 HETATM 2 C C2 MYA . . . F 4 14.731 -32.255 -57.048 1 32.8 ? C2 MYA 502 A 1 HETATM 3 C C3 MYA . . . F 4 15.322 -33.633 -57.333 1 35.12 ? C3 MYA 502 A 1 HETATM 4 N N4 MYA . . . F 4 16.758 -33.48 -57.598 1 36.48 ? N4 MYA 502 A 1 HETATM 5 C C5 MYA . . . F 4 17.24 -33.449 -58.845 1 36.16 ? C5 MYA 502 A 1 HETATM 6 O O5 MYA . . . F 4 16.54 -33.546 -59.849 1 35.72 ? O5 MYA 502 A 1 HETATM 7 C C6 MYA . . . F 4 18.753 -33.269 -58.954 1 38.01 ? C6 MYA 502 A 1 HETATM 8 C C7 MYA . . . F 4 19.466 -34.428 -58.274 1 40.42 ? C7 MYA 502 A 1 HETATM 9 N N8 MYA . . . F 4 18.89 -35.682 -58.77 1 46.62 ? N8 MYA 502 A 1 HETATM 10 C C9 MYA . . . F 4 18.91 -36.804 -58.044 1 42.63 ? C9 MYA 502 A 1 HETATM 11 O O9 MYA . . . F 4 19.45 -36.897 -56.944 1 42.2 ? O9 MYA 502 A 1 HETATM 12 C C10 MYA . . . F 4 18.285 -38.022 -58.72 1 43.39 ? C10 MYA 502 A 1 HETATM 13 O O10 MYA . . . F 4 18.403 -37.878 -60.137 1 46.11 ? O10 MYA 502 A 1 HETATM 14 C C11 MYA . . . F 4 16.808 -38.195 -58.349 1 41.49 ? C11 MYA 502 A 1 HETATM 15 C C12 MYA . . . F 4 16.338 -39.546 -58.89 1 40.7 ? C12 MYA 502 A 1 HETATM 16 C C13 MYA . . . F 4 15.97 -37.072 -58.962 1 40.18 ? C13 MYA 502 A 1 HETATM 17 C C14 MYA . . . F 4 16.647 -38.178 -56.831 1 39.64 ? C14 MYA 502 A 1 HETATM 18 N N1A MYA . . . F 4 10.787 -36.501 -58.372 1 36.39 ? N1A MYA 502 A 1 HETATM 19 O O1A MYA . . . F 4 16.538 -43.727 -57.966 1 38.63 ? O1A MYA 502 A 1 HETATM 20 P P1A MYA . . . F 4 16.21 -43.724 -59.404 1 36.97 ? P1A MYA 502 A 1 HETATM 21 C C1X MYA . . . F 4 11.63 -41.189 -60.623 1 40.93 ? C1X MYA 502 A 1 HETATM 22 C C2A MYA . . . F 4 10.017 -37.646 -58.185 1 37.12 ? C2A MYA 502 A 1 HETATM 23 O O2A MYA . . . F 4 16.702 -44.821 -60.257 1 46.22 ? O2A MYA 502 A 1 HETATM 24 P P2A MYA . . . F 4 17.925 -41.565 -59.443 1 40.91 ? P2A MYA 502 A 1 HETATM 25 C C2M MYA . . . F 4 12.386 -32.654 -55.722 1 32.15 ? C2M MYA 502 A 1 HETATM 26 O O2M MYA . . . F 4 13.134 -32.863 -54.771 1 32.28 ? O2M MYA 502 A 1 HETATM 27 C C2X MYA . . . F 4 11.972 -41.659 -62.008 1 41.82 ? C2X MYA 502 A 1 HETATM 28 O O2X MYA . . . F 4 11.053 -41.103 -62.96 1 48.04 ? O2X MYA 502 A 1 HETATM 29 N N3A MYA . . . F 4 10.38 -38.81 -58.867 1 38.37 ? N3A MYA 502 A 1 HETATM 30 O O3A MYA . . . F 4 16.656 -42.336 -60.031 1 39.11 ? O3A MYA 502 A 1 HETATM 31 C C3M MYA . . . F 4 10.876 -32.801 -55.579 1 32.24 ? C3M MYA 502 A 1 HETATM 32 C C3X MYA . . . F 4 11.711 -43.124 -61.812 1 41.26 ? C3X MYA 502 A 1 HETATM 33 O O3X MYA . . . F 4 10.32 -43.326 -61.564 1 40.54 ? O3X MYA 502 A 1 HETATM 34 P P3X MYA . . . F 4 9.428 -43.932 -62.725 1 40.87 ? P3X MYA 502 A 1 HETATM 35 C C4A MYA . . . F 4 11.453 -38.807 -59.669 1 39.05 ? C4A MYA 502 A 1 HETATM 36 O O4A MYA . . . F 4 18.784 -42.523 -58.716 1 41.87 ? O4A MYA 502 A 1 HETATM 37 C C4M MYA . . . F 4 10.581 -34.011 -54.699 1 34.39 ? C4M MYA 502 A 1 HETATM 38 C C4X MYA . . . F 4 12.497 -43.338 -60.532 1 40 ? C4X MYA 502 A 1 HETATM 39 O O4X MYA . . . F 4 12.47 -42.056 -59.837 1 40.37 ? O4X MYA 502 A 1 HETATM 40 C C5A MYA . . . F 4 12.17 -37.692 -59.821 1 38.84 ? C5A MYA 502 A 1 HETATM 41 O O5A MYA . . . F 4 18.51 -40.758 -60.529 1 46.78 ? O5A MYA 502 A 1 HETATM 42 C C5M MYA . . . F 4 9.811 -35.05 -55.508 1 32.85 ? C5M MYA 502 A 1 HETATM 43 C C5X MYA . . . F 4 13.979 -43.544 -60.809 1 38.25 ? C5X MYA 502 A 1 HETATM 44 O O5X MYA . . . F 4 14.623 -43.643 -59.542 1 37.32 ? O5X MYA 502 A 1 HETATM 45 C C6A MYA . . . F 4 11.843 -36.571 -59.187 1 37.36 ? C6A MYA 502 A 1 HETATM 46 N N6A MYA . . . F 4 12.625 -35.522 -59.408 1 36.19 ? N6A MYA 502 A 1 HETATM 47 O O6A MYA . . . F 4 17.218 -40.568 -58.409 1 43.92 ? O6A MYA 502 A 1 HETATM 48 C C6M MYA . . . F 4 9.474 -36.236 -54.606 1 32.5 ? C6M MYA 502 A 1 HETATM 49 N N7A MYA . . . F 4 13.166 -37.958 -60.657 1 39.66 ? N7A MYA 502 A 1 HETATM 50 O O7A MYA . . . F 4 8.067 -43.531 -62.322 1 41.79 ? O7A MYA 502 A 1 HETATM 51 C C7M MYA . . . F 4 7.977 -36.532 -54.694 1 32.83 ? C7M MYA 502 A 1 HETATM 52 C C8A MYA . . . F 4 13.069 -39.23 -61.024 1 44.28 ? C8A MYA 502 A 1 HETATM 53 O O8A MYA . . . F 4 9.922 -43.25 -63.924 1 53.31 ? O8A MYA 502 A 1 HETATM 54 C C8M MYA . . . F 4 7.485 -37.085 -53.354 1 32.1 ? C8M MYA 502 A 1 HETATM 55 N N9A MYA . . . F 4 12.008 -39.758 -60.423 1 41.28 ? N9A MYA 502 A 1 HETATM 56 O O9A MYA . . . F 4 9.683 -45.375 -62.651 1 52.39 ? O9A MYA 502 A 1 HETATM 57 C C9M MYA . . . F 4 6.014 -37.491 -53.477 1 32.82 ? C9M MYA 502 A 1 HETATM 58 C CAM MYA . . . F 4 5.25 -37.118 -52.202 1 31.8 ? CAM MYA 502 A 1 HETATM 59 C CBM MYA . . . F 4 5.709 -38.003 -51.045 1 31.4 ? CBM MYA 502 A 1 HETATM 60 C CCM MYA . . . F 4 5.095 -37.518 -49.732 1 31.22 ? CCM MYA 502 A 1 HETATM 61 C CDM MYA . . . F 4 3.647 -37.997 -49.609 1 32.54 ? CDM MYA 502 A 1 HETATM 62 C CEM MYA . . . F 4 3.167 -37.756 -48.178 1 31.93 ? CEM MYA 502 A 1 HETATM 63 C CFM MYA . . . F 4 1.643 -37.849 -48.113 1 32.46 ? CFM MYA 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 63 #