data_6SK3 # _model_server_result.job_id fO67O_J9oPifoY1wiZJ5HQ _model_server_result.datetime_utc '2024-11-23 02:58:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6sk3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 6SK3 # _exptl.entry_id 6SK3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 977.89 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TETRADECANOYL-COA _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.25 _cell.angle_gamma 90 _cell.entry_id 6SK3 _cell.length_a 91.806 _cell.length_b 58.074 _cell.length_c 148.212 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SK3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,J,L 1 1 B,D,G,H,I,K,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id H _struct_conn.ptnr1_label_atom_id O9A _struct_conn.ptnr1_label_comp_id MYA _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id MYA _struct_conn.ptnr1_auth_seq_id 502 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id I _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.978 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C35 H62 N7 O17 P3 S' _chem_comp.formula_weight 977.89 _chem_comp.id MYA _chem_comp.mon_nstd_flag . _chem_comp.name TETRADECANOYL-COA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MYRISTOYL-COA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2M S1 MYA sing 250 n n S1 C2 MYA sing 251 n n C2 C3 MYA sing 252 n n C2 H2 MYA sing 253 n n C2 H2A MYA sing 254 n n C3 N4 MYA sing 255 n n C3 H3 MYA sing 256 n n C3 H3A MYA sing 257 n n N4 C5 MYA sing 258 n n N4 HN4 MYA sing 259 n n O5 C5 MYA doub 260 n n C5 C6 MYA sing 261 n n C6 C7 MYA sing 262 n n C6 H6 MYA sing 263 n n C6 H6A MYA sing 264 n n N8 C7 MYA sing 265 n n C7 H7 MYA sing 266 n n C7 H7A MYA sing 267 n n C9 N8 MYA sing 268 n n N8 HN8 MYA sing 269 n n C10 C9 MYA sing 270 n n C9 O9 MYA doub 271 n n C11 C10 MYA sing 272 n n O10 C10 MYA sing 273 n n C10 H10 MYA sing 274 n n O10 HO10 MYA sing 275 n n C12 C11 MYA sing 276 n n C13 C11 MYA sing 277 n n C11 C14 MYA sing 278 n n C12 O6A MYA sing 279 n n C12 H12 MYA sing 280 n n C12 H12A MYA sing 281 n n C13 H13 MYA sing 282 n n C13 H13A MYA sing 283 n n C13 H13B MYA sing 284 n n C14 H14 MYA sing 285 n n C14 H14A MYA sing 286 n n C14 H14B MYA sing 287 n n C2A N1A MYA doub 288 n y N1A C6A MYA sing 289 n y P1A O1A MYA sing 290 n n O1A HO1A MYA sing 291 n n O5X P1A MYA sing 292 n n O2A P1A MYA doub 293 n n P1A O3A MYA sing 294 n n C2X C1X MYA sing 295 n n C1X O4X MYA sing 296 n n C1X N9A MYA sing 297 n n C1X H1X MYA sing 298 n n N3A C2A MYA sing 299 n y C2A H2AA MYA sing 300 n n O3A P2A MYA sing 301 n n O6A P2A MYA sing 302 n n P2A O4A MYA doub 303 n n P2A O5A MYA sing 304 n n C3M C2M MYA sing 305 n n C2M O2M MYA doub 306 n n O2X C2X MYA sing 307 n n C3X C2X MYA sing 308 n n C2X H2X MYA sing 309 n n O2X HO2X MYA sing 310 n n N3A C4A MYA doub 311 n y C4M C3M MYA sing 312 n n C3M H3M MYA sing 313 n n C3M H3MA MYA sing 314 n n O3X C3X MYA sing 315 n n C3X C4X MYA sing 316 n n C3X H3X MYA sing 317 n n P3X O3X MYA sing 318 n n O9A P3X MYA doub 319 n n O8A P3X MYA sing 320 n n P3X O7A MYA sing 321 n n C4A N9A MYA sing 322 n y C4A C5A MYA sing 323 n y C5M C4M MYA sing 324 n n C4M H4M MYA sing 325 n n C4M H4MA MYA sing 326 n n C4X O4X MYA sing 327 n n C4X C5X MYA sing 328 n n C4X H4X MYA sing 329 n n C5A C6A MYA doub 330 n y C5A N7A MYA sing 331 n y O5A HO5A MYA sing 332 n n C6M C5M MYA sing 333 n n C5M H5M MYA sing 334 n n C5M H5MA MYA sing 335 n n C5X O5X MYA sing 336 n n C5X H5X MYA sing 337 n n C5X H5XA MYA sing 338 n n C6A N6A MYA sing 339 n n N6A HN6A MYA sing 340 n n N6A HN6B MYA sing 341 n n C7M C6M MYA sing 342 n n C6M H6M MYA sing 343 n n C6M H6MA MYA sing 344 n n C8A N7A MYA doub 345 n y O7A HO7A MYA sing 346 n n C8M C7M MYA sing 347 n n C7M H7M MYA sing 348 n n C7M H7MA MYA sing 349 n n N9A C8A MYA sing 350 n y C8A H8A MYA sing 351 n n O8A HO8A MYA sing 352 n n C9M C8M MYA sing 353 n n C8M H8M MYA sing 354 n n C8M H8MA MYA sing 355 n n CAM C9M MYA sing 356 n n C9M H9M MYA sing 357 n n C9M H9MA MYA sing 358 n n CAM CBM MYA sing 359 n n CAM HAM MYA sing 360 n n CAM HAMA MYA sing 361 n n CCM CBM MYA sing 362 n n CBM HBM MYA sing 363 n n CBM HBMA MYA sing 364 n n CDM CCM MYA sing 365 n n CCM HCM MYA sing 366 n n CCM HCMA MYA sing 367 n n CEM CDM MYA sing 368 n n CDM HDM MYA sing 369 n n CDM HDMA MYA sing 370 n n CFM CEM MYA sing 371 n n CEM HEM MYA sing 372 n n CEM HEMA MYA sing 373 n n CFM HFM MYA sing 374 n n CFM HFMA MYA sing 375 n n CFM HFMB MYA sing 376 n n # _atom_sites.entry_id 6SK3 _atom_sites.fract_transf_matrix[1][1] 0.010893 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000428 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006752 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL A 1 501 503 GOL GOL . F 4 MYA A 1 502 501 MYA MYA . G 3 GOL B 1 501 503 GOL GOL . H 4 MYA B 1 502 501 MYA MYA . I 5 MG B 1 503 1 MG MG . J 6 HOH A 1 601 12 HOH HOH . J 6 HOH A 2 602 14 HOH HOH . J 6 HOH A 3 603 9 HOH HOH . J 6 HOH A 4 604 15 HOH HOH . J 6 HOH A 5 605 8 HOH HOH . J 6 HOH A 6 606 13 HOH HOH . J 6 HOH A 7 607 2 HOH HOH . J 6 HOH A 8 608 5 HOH HOH . J 6 HOH A 9 609 11 HOH HOH . K 6 HOH B 1 601 16 HOH HOH . K 6 HOH B 2 602 4 HOH HOH . K 6 HOH B 3 603 7 HOH HOH . K 6 HOH B 4 604 10 HOH HOH . L 6 HOH C 1 101 1 HOH HOH . M 6 HOH D 1 101 6 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 MYA . . . H 4 -11.364 -25.619 -16.827 1 33.02 ? S1 MYA 502 B 1 HETATM 2 C C2 MYA . . . H 4 -10.474 -25.767 -15.245 1 35.57 ? C2 MYA 502 B 1 HETATM 3 C C3 MYA . . . H 4 -10.06 -24.414 -14.672 1 35.91 ? C3 MYA 502 B 1 HETATM 4 N N4 MYA . . . H 4 -9.633 -24.628 -13.284 1 35.91 ? N4 MYA 502 B 1 HETATM 5 C C5 MYA . . . H 4 -10.524 -24.634 -12.29 1 35.06 ? C5 MYA 502 B 1 HETATM 6 O O5 MYA . . . H 4 -11.729 -24.455 -12.455 1 34.23 ? O5 MYA 502 B 1 HETATM 7 C C6 MYA . . . H 4 -9.95 -24.909 -10.903 1 36.83 ? C6 MYA 502 B 1 HETATM 8 C C7 MYA . . . H 4 -9.089 -23.751 -10.421 1 38.15 ? C7 MYA 502 B 1 HETATM 9 N N8 MYA . . . H 4 -9.816 -22.498 -10.636 1 39.68 ? N8 MYA 502 B 1 HETATM 10 C C9 MYA . . . H 4 -9.161 -21.356 -10.855 1 40.19 ? C9 MYA 502 B 1 HETATM 11 O O9 MYA . . . H 4 -7.935 -21.269 -10.853 1 39.68 ? O9 MYA 502 B 1 HETATM 12 C C10 MYA . . . H 4 -10.053 -20.13 -11.063 1 42.02 ? C10 MYA 502 B 1 HETATM 13 O O10 MYA . . . H 4 -11.338 -20.387 -10.494 1 52.87 ? O10 MYA 502 B 1 HETATM 14 C C11 MYA . . . H 4 -10.225 -19.799 -12.552 1 41.15 ? C11 MYA 502 B 1 HETATM 15 C C12 MYA . . . H 4 -11.065 -18.531 -12.667 1 41.79 ? C12 MYA 502 B 1 HETATM 16 C C13 MYA . . . H 4 -10.924 -20.949 -13.277 1 39.2 ? C13 MYA 502 B 1 HETATM 17 C C14 MYA . . . H 4 -8.868 -19.547 -13.207 1 40.9 ? C14 MYA 502 B 1 HETATM 18 N N1A MYA . . . H 4 -12.918 -21.315 -17.907 1 37.8 ? N1A MYA 502 B 1 HETATM 19 O O1A MYA . . . H 4 -9.873 -14.485 -12.818 1 41.01 ? O1A MYA 502 B 1 HETATM 20 P P1A MYA . . . H 4 -11.312 -14.282 -12.58 1 39.13 ? P1A MYA 502 B 1 HETATM 21 C C1X MYA . . . H 4 -14.699 -16.897 -15.88 1 40.08 ? C1X MYA 502 B 1 HETATM 22 C C2A MYA . . . H 4 -12.886 -20.049 -18.485 1 37.6 ? C2A MYA 502 B 1 HETATM 23 O O2A MYA . . . H 4 -11.771 -13.037 -11.93 1 44.73 ? O2A MYA 502 B 1 HETATM 24 P P2A MYA . . . H 4 -10.942 -16.527 -10.98 1 40.15 ? P2A MYA 502 B 1 HETATM 25 C C2M MYA . . . H 4 -10.004 -25.444 -17.892 1 35.45 ? C2M MYA 502 B 1 HETATM 26 O O2M MYA . . . H 4 -8.831 -25.413 -17.523 1 34.85 ? O2M MYA 502 B 1 HETATM 27 C C2X MYA . . . H 4 -15.762 -16.333 -14.986 1 40.15 ? C2X MYA 502 B 1 HETATM 28 O O2X MYA . . . H 4 -17.071 -16.734 -15.419 1 39.09 ? O2X MYA 502 B 1 HETATM 29 N N3A MYA . . . H 4 -13.421 -18.977 -17.772 1 38.38 ? N3A MYA 502 B 1 HETATM 30 O O3A MYA . . . H 4 -11.899 -15.546 -11.799 1 40.45 ? O3A MYA 502 B 1 HETATM 31 C C3M MYA . . . H 4 -10.367 -25.33 -19.366 1 35.28 ? C3M MYA 502 B 1 HETATM 32 C C3X MYA . . . H 4 -15.54 -14.888 -15.297 1 41.34 ? C3X MYA 502 B 1 HETATM 33 O O3X MYA . . . H 4 -15.998 -14.627 -16.619 1 40.39 ? O3X MYA 502 B 1 HETATM 34 P P3X MYA . . . H 4 -17.347 -13.818 -16.76 1 39.52 ? P3X MYA 502 B 1 HETATM 35 C C4A MYA . . . H 4 -13.949 -19.187 -16.56 1 41.76 ? C4A MYA 502 B 1 HETATM 36 O O4A MYA . . . H 4 -9.858 -15.741 -10.36 1 41.68 ? O4A MYA 502 B 1 HETATM 37 C C4M MYA . . . H 4 -11.102 -24.013 -19.592 1 36.14 ? C4M MYA 502 B 1 HETATM 38 C C4X MYA . . . H 4 -14.02 -14.83 -15.267 1 41.48 ? C4X MYA 502 B 1 HETATM 39 O O4X MYA . . . H 4 -13.585 -16.203 -15.332 1 40.89 ? O4X MYA 502 B 1 HETATM 40 C C5A MYA . . . H 4 -13.969 -20.41 -16.031 1 39.42 ? C5A MYA 502 B 1 HETATM 41 O O5A MYA . . . H 4 -11.806 -17.372 -10.133 1 62.09 ? O5A MYA 502 B 1 HETATM 42 C C5M MYA . . . H 4 -10.32 -23.187 -20.608 1 35.38 ? C5M MYA 502 B 1 HETATM 43 C C5X MYA . . . H 4 -13.512 -14.4 -13.906 1 41.61 ? C5X MYA 502 B 1 HETATM 44 O O5X MYA . . . H 4 -12.093 -14.432 -13.942 1 40.72 ? O5X MYA 502 B 1 HETATM 45 C C6A MYA . . . H 4 -13.462 -21.448 -16.693 1 39.19 ? C6A MYA 502 B 1 HETATM 46 N N6A MYA . . . H 4 -13.526 -22.626 -16.083 1 46.37 ? N6A MYA 502 B 1 HETATM 47 O O6A MYA . . . H 4 -10.315 -17.444 -12.124 1 41.99 ? O6A MYA 502 B 1 HETATM 48 C C6M MYA . . . H 4 -10.56 -21.705 -20.353 1 34.18 ? C6M MYA 502 B 1 HETATM 49 N N7A MYA . . . H 4 -14.544 -20.325 -14.837 1 39.08 ? N7A MYA 502 B 1 HETATM 50 O O7A MYA . . . H 4 -17.462 -13.611 -18.213 1 41.05 ? O7A MYA 502 B 1 HETATM 51 C C7M MYA . . . H 4 -11.309 -21.107 -21.539 1 33.65 ? C7M MYA 502 B 1 HETATM 52 C C8A MYA . . . H 4 -14.88 -19.057 -14.626 1 40.1 ? C8A MYA 502 B 1 HETATM 53 O O8A MYA . . . H 4 -18.348 -14.732 -16.205 1 42.05 ? O8A MYA 502 B 1 HETATM 54 C C8M MYA . . . H 4 -10.356 -21.003 -22.729 1 32.76 ? C8M MYA 502 B 1 HETATM 55 N N9A MYA . . . H 4 -14.52 -18.356 -15.695 1 39.85 ? N9A MYA 502 B 1 HETATM 56 O O9A MYA . . . H 4 -17.079 -12.598 -15.991 1 43.73 ? O9A MYA 502 B 1 HETATM 57 C C9M MYA . . . H 4 -11.143 -20.601 -23.976 1 31.82 ? C9M MYA 502 B 1 HETATM 58 C CAM MYA . . . H 4 -10.342 -20.971 -25.225 1 31.11 ? CAM MYA 502 B 1 HETATM 59 C CBM MYA . . . H 4 -9.43 -19.812 -25.614 1 30.14 ? CBM MYA 502 B 1 HETATM 60 C CCM MYA . . . H 4 -8.383 -20.295 -26.616 1 29.19 ? CCM MYA 502 B 1 HETATM 61 C CDM MYA . . . H 4 -8.864 -20.016 -28.039 1 28.84 ? CDM MYA 502 B 1 HETATM 62 C CEM MYA . . . H 4 -7.669 -20.048 -28.989 1 28.83 ? CEM MYA 502 B 1 HETATM 63 C CFM MYA . . . H 4 -8.168 -20.02 -30.433 1 29.72 ? CFM MYA 502 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 63 #